Lsi10G003080 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi10G003080
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Copper ion-binding protein, putative
Location	chr10 : 4934157 .. 4936890 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGTTGGTTTTGGGGCCATAATTGCACTCTGCCTTTCATTCCTAGACACAATCGGCCTCCACCACCACCATTACGACGTCCTCGAACCCCGCCATCACATCGGTTTCCACCTGCACCATCACGACATCCTCGAACACCACCATCGCCCCGGTTTCCACCACCATCAAGACATCCTCGAACGCCACCATCACCTCGGTTGTCACCACCACCACCATCACGACGTCCTCGAACGCCACCACCACAATGGATACCATCGCCACCACCACCATCACCAGTGCTGTCATCGCCTCCACCACCATCACGAAGGCCTCGAACACCACCACCACAAAAGTTGCCACCACCGTCACAACCCGAGACACCGCCGCCATCACCGATGGTGTCACCACCACCACCACCACGATCACGACGGCCACGAACACCACCACCATCCCAACAAATACCACTACCACCGTCATCGCCATCGTTGCCGCCACCGCCATCGTCATCGCCACCATCACCACTACCGAGCCCACAAAGTCCAAGAAAGATCATAGTGGGTGGTTCTAAGCAATGGCAACTTGGCTTCGATTATAATGATTGGGCACTAAAAAATGGTCCCTTTTATGTAAACGATATTCTAGGTAAGCCTTTTTAAGCTCATTTCCATGGTTAATATGAGAAGAAATTCATTCCCAAACTTATTGGAAGTTTTTGTTTTTTGCAGTGTTCAAATACGATCCTCCAAACACTTCAACTCCTCCTCATAGTGTTTATCAGCTACCAAACATGAGAAGCTTTGCTAATTGTGATTTGGGAAAGGCCAAAATGGTAGCAAATTTAACACAAGGAAGTGGAGATGGGTTTGAGTTTGTGCTCAAAGACCAAAATCCTTACTACTTTGCTTGTGGAGAAGGCAATGGCTTCCATTGCAAACTTGGATCCATGAAGTTCACCCTCATACCAATAGTTCAGACTTGATGATTTTACGAGTTTTCTTGAAAGAACAATACTTAAGTACATCTCAAGATACATCTATTTTTGTGCATTTAAAAAATATTTTTAAAAAATGAAGTAAGAAGAGTTTTTCACGTGACAAACTATATGATTGGACAATGGAGTGAAATGCACAGAGATGAGTGTAGCTTGGGATGCACCTAAATATTTTTTTTTCTTGAAATGCACTTTTCTTAGAATATATTTCTTTTCAAACCTTCACAAGAATATAGTTTTTATGAGCTATAATCAGTTAACATGGTTAAATAAGATATCTCAACGGGAGAAGATGATGATCGAGCTAGTTATACTTTTGTTTTATGTGATTCAGTTTTTTTGTTCAACTTTTTGAAGTAGGATAAACAAACATCTATCCTTTTTAGTCGAGAGTATATGTTTTAACCATTGAAGCAATGGTCAGATAGACCGCTCTGGTTACTTTTAATAAATTAATTTTGTGTTTTTCAATATTTATCTGTTTTTAAGTACATACACTATTCAGCTATATATCTTCATAAATATCAAAATGAATAACCGTGTCATACCTGAAAACAAAGAGGAAAGAAGCTATATATTATATGTATGAAGAAAAAGTAAATCACATGTTAATTAGTGAGAACTTTAATCCAATTATATTAAATAATCTAAATCAATAATCGATGATATGATTGAATCAATATAAACTAACCAAAAACTCATTATTGTTACTAATGACATCCTATTGTTTAAAGAACTTTCAGACTTTATTATTTTTATTTTATTTTTATTGTATTTTATAGATTCTTTAAAATATATATATATATACTTTTAGTCCATAAAATTTGGATTAAATTACATTTGGATTCTTGAGTTTTCAAACTCAATAATTTTACCCCTAATTTTGCTTTTGGCGTAAATTCTTGGTCCTTCTATTAGTTTTTCTTTTCTCAAACAAGCAATACTAAGATGCACCCATCTGTATTCATCTCATTCTAATCATACACAAAGAAAAATCTAAAAATAATTTAAATATGAAATAAGAAGGGTTTGCCACGTAAGTATGATTAGATAATTAGATAGGATACATATAGATAGAGATAACCTGAGGACACCTAAATATTTTTCTTCCTATTGCGATCTTCTTCAACATTTTCTCAAATTTAGCTTCTAGTGTCATAGTGTGTCGTTTTTGAAAATAAAAAAATTATTTAAGAGAATAAAAATAGCGCAACAAACAAATAAGAGTCATTCGTACAAATTTTTCTTAATATTATTGACAATAAACAAATATATGAGATACATAGGAGGCCATCATATTGGCATCATTAAGATGTCATCACATAAGTGGAGTGGATATATTTCAAAAGTGCTTGTTGGTAAAACAACACCTTTAATTAATGCTCCCAATTCCCTACTATTAGTTTTATATATTGCTATACACTTGAAAAGCCTAACAATGACAATTTTCTTATGAATTTCATAGTGCCTTTGACCTAATTATGCTTTTTCATAATAGAAAGAAAATATATTGAAACTTTATTTCAGTTTTATTGACTTGTATTTGAGTAGAGGTGAAATTTTATTACCTACTCATTTTTGCTTTCACATTTATCATTTTAGTCCATGATTAGAGTAATTTATAGCGGAGAATATCTTTACAAGATTATCTATGTCTTTGATATATGCATCAATTTTAATTTTTAAGTTTAGAAACGAGTTAGGTTAAAACTGGTTAGGGTTACGTTTGTAGAGTTCAAAACAAGTTGTCATAGCTTTTGA

mRNA sequence

ATGAAGACACAATCGGCCTCCACCACCACCATTACGACGTCCTCGAACCCCGCCATCACATCGGTTTCCACCTGCACCATCACGACATCCTCGAACACCACCATCGCCCCGGTTTCCACCACCATCAAGACATCCTCGAACGCCACCATCACCTCGGTTGTCACCACCACCACCATCACGACGTCCTCGAACGCCACCACCACAATGGATACCATCGCCACCACCACCATCACCAGTGCTGTCATCGCCTCCACCACCATCACGAAGGCCTCGAACACCACCACCACAAAAGTTGCCACCACCGTCACAACCCGAGACACCGCCGCCATCACCGATGGTGTCACCACCACCACCACCACGATCACGACGGCCACGAACACCACCACCATCCCAACAAATACCACTACCACCGTCATCGCCATCGTTGCCGCCACCGCCATCGTCATCGCCACCATCACCACTACCGAGCCCACAAAGTCCAAGAAAGATCATATGTTCAAATACGATCCTCCAAACACTTCAACTCCTCCTCATAGTGTTTATCAGCTACCAAACATGAGAAGCTTTGCTAATTGTGATTTGGGAAAGGCCAAAATGGTAGCAAATTTAACACAAGGAAGTGGAGATGGGTTTGAGTTTGTGCTCAAAGACCAAAATCCTTACTACTTTGCTTGTGGAGAAGGCAATGGCTTCCATTGCAAACTTGGATCCATGAAGTTCACCCTCATACCAATAAAACGAGTTAGGTTAAAACTGGTTAGGGTTACGTTTGTAGAGTTCAAAACAAGTTGTCATAGCTTTTGA

Coding sequence (CDS)

ATGAAGACACAATCGGCCTCCACCACCACCATTACGACGTCCTCGAACCCCGCCATCACATCGGTTTCCACCTGCACCATCACGACATCCTCGAACACCACCATCGCCCCGGTTTCCACCACCATCAAGACATCCTCGAACGCCACCATCACCTCGGTTGTCACCACCACCACCATCACGACGTCCTCGAACGCCACCACCACAATGGATACCATCGCCACCACCACCATCACCAGTGCTGTCATCGCCTCCACCACCATCACGAAGGCCTCGAACACCACCACCACAAAAGTTGCCACCACCGTCACAACCCGAGACACCGCCGCCATCACCGATGGTGTCACCACCACCACCACCACGATCACGACGGCCACGAACACCACCACCATCCCAACAAATACCACTACCACCGTCATCGCCATCGTTGCCGCCACCGCCATCGTCATCGCCACCATCACCACTACCGAGCCCACAAAGTCCAAGAAAGATCATATGTTCAAATACGATCCTCCAAACACTTCAACTCCTCCTCATAGTGTTTATCAGCTACCAAACATGAGAAGCTTTGCTAATTGTGATTTGGGAAAGGCCAAAATGGTAGCAAATTTAACACAAGGAAGTGGAGATGGGTTTGAGTTTGTGCTCAAAGACCAAAATCCTTACTACTTTGCTTGTGGAGAAGGCAATGGCTTCCATTGCAAACTTGGATCCATGAAGTTCACCCTCATACCAATAAAACGAGTTAGGTTAAAACTGGTTAGGGTTACGTTTGTAGAGTTCAAAACAAGTTGTCATAGCTTTTGA

Protein sequence

MKTQSASTTTITTSSNPAITSVSTCTITTSSNTTIAPVSTTIKTSSNATITSVVTTTTITTSSNATTTMDTIATTTITSAVIASTTITKASNTTTTKVATTVTTRDTAAITDGVTTTTTTITTATNTTTIPTNTTTTVIAIVAATAIVIATITTTEPTKSKKDHMFKYDPPNTSTPPHSVYQLPNMRSFANCDLGKAKMVANLTQGSGDGFEFVLKDQNPYYFACGEGNGFHCKLGSMKFTLIPIKRVRLKLVRVTFVEFKTSCHSF

Homology

[Close]

BLAST of Lsi10G003080 vs. TrEMBL
Match: A0A0A0LIT9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G234585 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.5e-36
Identity = 71/81 (87.65%), Postives = 76/81 (93.83%), Query Frame = 1


Query: 165 MFKYDPPNTSTPPHSVYQLPNMRSFANCDLGKAKMVANLTQGSGDGFEFVLKDQNPYYFA 224
           +FKYDPPN STPPH+VY LPNMRS ANCD GKAK++AN+TQGSGDGFEFVLKDQNPYYFA
Sbjct: 211 VFKYDPPNRSTPPHNVYLLPNMRSLANCDFGKAKVLANITQGSGDGFEFVLKDQNPYYFA 270

Query: 225 CGEGNGFHCKLGSMKFTLIPI 246
           CGEGNGFHCKLGSMKFTL PI
Sbjct: 271 CGEGNGFHCKLGSMKFTLTPI 291

[Close]

BLAST of Lsi10G003080 vs. TrEMBL
Match: A0A061E0S0_THECC (CUB and sushi domain-containing protein 3 OS=Theobroma cacao GN=TCM_007009 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 7.6e-28
Identity = 59/83 (71.08%), Postives = 68/83 (81.93%), Query Frame = 1


Query: 165 MFKYDPPNTSTPPHSVYQLPNMRSFANCDLGKAKMVANLTQGSGDGFEFVLKDQNPYYFA 224
           +FKYDPP+ +T PHSVY LPN+RSF NCDL KAKM+AN TQG G+GFEFVLK   PYYFA
Sbjct: 84  VFKYDPPSNTTFPHSVYLLPNLRSFLNCDLRKAKMIANPTQGGGNGFEFVLKRWRPYYFA 143

Query: 225 CGEGNGFHCKLGSMKFTLIPIKR 248
           CGE NGFHCK G MKF ++P+ R
Sbjct: 144 CGERNGFHCKDGLMKFAVVPLLR 166

[Close]

BLAST of Lsi10G003080 vs. TrEMBL
Match: A0A0D2V906_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G041200 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 3.8e-27
Identity = 58/84 (69.05%), Postives = 71/84 (84.52%), Query Frame = 1


Query: 165 MFKYDPPNTSTPPHSVYQLPNMRSFANCDLGKAKMVANLTQGSGDGFEFVLKDQNPYYFA 224
           +FKYDPP+ +T PHSVY LP+++SF NCDL KAKM+AN TQGSG+GFEFVLK   PYYFA
Sbjct: 82  VFKYDPPSNTTFPHSVYLLPHLKSFLNCDLRKAKMIANPTQGSGNGFEFVLKKWKPYYFA 141

Query: 225 CGEGNGFHCKLGSMKFTLI-PIKR 248
           CGE NGFHCK+G MKF ++ P++R
Sbjct: 142 CGERNGFHCKVGLMKFAVVSPLRR 165

[Close]

BLAST of Lsi10G003080 vs. TrEMBL
Match: V4RPI0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029852mg PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.2e-26
Identity = 55/83 (66.27%), Postives = 65/83 (78.31%), Query Frame = 1


Query: 165 MFKYDPPNTSTPPHSVYQLPNMRSFANCDLGKAKMVANLTQGSGDGFEFVLKDQNPYYFA 224
           +FKYDPPN +  PHSVYQLPN+ S+  CDL +AKM+AN TQG GDGFEFVLK   PYYFA
Sbjct: 93  VFKYDPPNDTVFPHSVYQLPNLWSYLRCDLSRAKMIANTTQGGGDGFEFVLKRWQPYYFA 152

Query: 225 CGEGNGFHCKLGSMKFTLIPIKR 248
           CGE  GFHC+ G MKF ++P+ R
Sbjct: 153 CGERGGFHCREGRMKFMVLPLLR 175

[Close]

BLAST of Lsi10G003080 vs. TrEMBL
Match: A0A0D2S850_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G042000 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.2e-26
Identity = 56/83 (67.47%), Postives = 67/83 (80.72%), Query Frame = 1


Query: 165 MFKYDPPNTSTPPHSVYQLPNMRSFANCDLGKAKMVANLTQGSGDGFEFVLKDQNPYYFA 224
           +FKYDPP+ +T PHSVY  P+  S+ NCDL +AKMVAN TQG GDGFEFVLK   PYYFA
Sbjct: 101 VFKYDPPSNTTFPHSVYLFPDRWSYLNCDLKRAKMVANATQGGGDGFEFVLKRWTPYYFA 160

Query: 225 CGEGNGFHCKLGSMKFTLIPIKR 248
           CGE NGFHCK+GSM+F ++P+ R
Sbjct: 161 CGERNGFHCKVGSMRFMVMPLFR 183

[Close]

BLAST of Lsi10G003080 vs. TAIR10
Match: AT2G15780.1 (AT2G15780.1 Cupredoxin superfamily protein)

HSP 1 Score: 99.8 bits (247), Expect = 2.8e-21
Identity = 45/81 (55.56%), Postives = 58/81 (71.60%), Query Frame = 1


Query: 165 MFKYDPPNTSTPPHSVYQLPNMRSFANCDLGKAKMVANLTQGSGDGFEFVLKDQNPYYFA 224
           +FKY+PP   T  HSVY LPN  S+  CD+ K KM+A+  QG+G GFEFVLK   PYY +
Sbjct: 175 VFKYNPPAPFT--HSVYLLPNPSSYEKCDVKKGKMIASPKQGAGKGFEFVLKQMKPYYIS 234

Query: 225 CGEGNGFHCKLGSMKFTLIPI 246
           CGE +G HC  G+MKFT++P+
Sbjct: 235 CGEHDGAHCSNGTMKFTVMPM 253

[Close]

BLAST of Lsi10G003080 vs. TAIR10
Match: AT2G15770.1 (AT2G15770.1 Cupredoxin superfamily protein)

HSP 1 Score: 69.7 bits (169), Expect = 3.1e-12
Identity = 34/96 (35.42%), Postives = 56/96 (58.33%), Query Frame = 1


Query: 165 MFKYDPPNTSTPPHSVYQLPNMRSFANCDLGKAKMVANLTQGSGDGFEFVLKDQNPYYFA 224
           +FKYD   ++   ++VY   +  S+ NCD+  A+ + +  +GS + F F LK   PY+FA
Sbjct: 177 VFKYD--KSAKRRNNVYLFKDRWSYMNCDIKNARKIGSTRKGSEESFNFTLKKIQPYFFA 236

Query: 225 CGEGNGFHCKLGSMKFTLIPIKRVRLKLVRVTFVEF 261
            GE +G +C+  +MKFT+ P+  V +K   V  + F
Sbjct: 237 SGEHDGDYCRNHNMKFTIFPVLTVLIKSYHVFMLGF 270

[Close]

BLAST of Lsi10G003080 vs. NCBI nr
Match: gi|659118621|ref|XP_008459215.1| (PREDICTED: extensin, partial [Cucumis melo])

HSP 1 Score: 164.9 bits (416), Expect = 2.0e-37
Identity = 73/81 (90.12%), Postives = 77/81 (95.06%), Query Frame = 1


Query: 165 MFKYDPPNTSTPPHSVYQLPNMRSFANCDLGKAKMVANLTQGSGDGFEFVLKDQNPYYFA 224
           +FKYDPPN STPPHSVY LPNMRSFANCDLGKAKM+AN+ QGSGDGFEFVLKDQNPYYFA
Sbjct: 72  VFKYDPPNMSTPPHSVYLLPNMRSFANCDLGKAKMLANIKQGSGDGFEFVLKDQNPYYFA 131

Query: 225 CGEGNGFHCKLGSMKFTLIPI 246
           CGEGNGFHCKLGSMKFT+ PI
Sbjct: 132 CGEGNGFHCKLGSMKFTITPI 152

[Close]

BLAST of Lsi10G003080 vs. NCBI nr
Match: gi|778669144|ref|XP_011649199.1| (PREDICTED: leucine-rich repeat extensin-like protein 3 [Cucumis sativus])

HSP 1 Score: 161.4 bits (407), Expect = 2.2e-36
Identity = 71/81 (87.65%), Postives = 76/81 (93.83%), Query Frame = 1


Query: 165 MFKYDPPNTSTPPHSVYQLPNMRSFANCDLGKAKMVANLTQGSGDGFEFVLKDQNPYYFA 224
           +FKYDPPN STPPH+VY LPNMRS ANCD GKAK++AN+TQGSGDGFEFVLKDQNPYYFA
Sbjct: 211 VFKYDPPNRSTPPHNVYLLPNMRSLANCDFGKAKVLANITQGSGDGFEFVLKDQNPYYFA 270

Query: 225 CGEGNGFHCKLGSMKFTLIPI 246
           CGEGNGFHCKLGSMKFTL PI
Sbjct: 271 CGEGNGFHCKLGSMKFTLTPI 291

[Close]

BLAST of Lsi10G003080 vs. NCBI nr
Match: gi|590686390|ref|XP_007042366.1| (CUB and sushi domain-containing protein 3 [Theobroma cacao])

HSP 1 Score: 132.5 bits (332), Expect = 1.1e-27
Identity = 59/83 (71.08%), Postives = 68/83 (81.93%), Query Frame = 1


Query: 165 MFKYDPPNTSTPPHSVYQLPNMRSFANCDLGKAKMVANLTQGSGDGFEFVLKDQNPYYFA 224
           +FKYDPP+ +T PHSVY LPN+RSF NCDL KAKM+AN TQG G+GFEFVLK   PYYFA
Sbjct: 84  VFKYDPPSNTTFPHSVYLLPNLRSFLNCDLRKAKMIANPTQGGGNGFEFVLKRWRPYYFA 143

Query: 225 CGEGNGFHCKLGSMKFTLIPIKR 248
           CGE NGFHCK G MKF ++P+ R
Sbjct: 144 CGERNGFHCKDGLMKFAVVPLLR 166

[Close]

BLAST of Lsi10G003080 vs. NCBI nr
Match: gi|823258427|ref|XP_012461918.1| (PREDICTED: uncharacterized protein LOC105781949 [Gossypium raimondii])

HSP 1 Score: 130.2 bits (326), Expect = 5.4e-27
Identity = 58/84 (69.05%), Postives = 71/84 (84.52%), Query Frame = 1


Query: 165 MFKYDPPNTSTPPHSVYQLPNMRSFANCDLGKAKMVANLTQGSGDGFEFVLKDQNPYYFA 224
           +FKYDPP+ +T PHSVY LP+++SF NCDL KAKM+AN TQGSG+GFEFVLK   PYYFA
Sbjct: 82  VFKYDPPSNTTFPHSVYLLPHLKSFLNCDLRKAKMIANPTQGSGNGFEFVLKKWKPYYFA 141

Query: 225 CGEGNGFHCKLGSMKFTLI-PIKR 248
           CGE NGFHCK+G MKF ++ P++R
Sbjct: 142 CGERNGFHCKVGLMKFAVVSPLRR 165

[Close]

BLAST of Lsi10G003080 vs. NCBI nr
Match: gi|567860818|ref|XP_006423063.1| (hypothetical protein CICLE_v10029852mg [Citrus clementina])

HSP 1 Score: 127.1 bits (318), Expect = 4.6e-26
Identity = 55/83 (66.27%), Postives = 65/83 (78.31%), Query Frame = 1


Query: 165 MFKYDPPNTSTPPHSVYQLPNMRSFANCDLGKAKMVANLTQGSGDGFEFVLKDQNPYYFA 224
           +FKYDPPN +  PHSVYQLPN+ S+  CDL +AKM+AN TQG GDGFEFVLK   PYYFA
Sbjct: 93  VFKYDPPNDTVFPHSVYQLPNLWSYLRCDLSRAKMIANTTQGGGDGFEFVLKRWQPYYFA 152

Query: 225 CGEGNGFHCKLGSMKFTLIPIKR 248
           CGE  GFHC+ G MKF ++P+ R
Sbjct: 153 CGERGGFHCREGRMKFMVLPLLR 175

The following BLAST results are available for this feature:

BLAST of Lsi10G003080 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi10G003080 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LIT9_CUCSA	1.5e-36	87.65	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G234585 PE=4 SV=1	[more]
A0A061E0S0_THECC	7.6e-28	71.08	CUB and sushi domain-containing protein 3 OS=Theobroma cacao GN=TCM_007009 PE=4 ...	[more]
A0A0D2V906_GOSRA	3.8e-27	69.05	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G041200 PE=4 SV=1	[more]
V4RPI0_9ROSI	3.2e-26	66.27	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029852mg PE=4 SV=1	[more]
A0A0D2S850_GOSRA	3.2e-26	67.47	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G042000 PE=4 SV=1	[more]

BLAST of Lsi10G003080 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G15780.1	2.8e-21	55.56	Cupredoxin superfamily protein	[more]
AT2G15770.1	3.1e-12	35.42	Cupredoxin superfamily protein	[more]

BLAST of Lsi10G003080 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659118621\|ref\|XP_008459215.1\|	2.0e-37	90.12	PREDICTED: extensin, partial [Cucumis melo]	[more]
gi\|778669144\|ref\|XP_011649199.1\|	2.2e-36	87.65	PREDICTED: leucine-rich repeat extensin-like protein 3 [Cucumis sativus]	[more]
gi\|590686390\|ref\|XP_007042366.1\|	1.1e-27	71.08	CUB and sushi domain-containing protein 3 [Theobroma cacao]	[more]
gi\|823258427\|ref\|XP_012461918.1\|	5.4e-27	69.05	PREDICTED: uncharacterized protein LOC105781949 [Gossypium raimondii]	[more]
gi\|567860818\|ref\|XP_006423063.1\|	4.6e-26	66.27	hypothetical protein CICLE_v10029852mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008972	Cupredoxin

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0022900	electron transport chain
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0009055	electron carrier activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi10G003080.1	Lsi10G003080.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008972	Cupredoxin	GENE3D	G3DSA:2.60.40.420		coord: 152..242 score: 7.
IPR008972	Cupredoxin	unknown	SSF49503	Cupredoxins	coord: 166..243 score: 1.0
None	No IPR available	PANTHER	PTHR34052	FAMILY NOT NAMED	coord: 165..252 score: 3.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi10G003080	CSPI02G11640	Wild cucumber (PI 183967)	cpilsiB091
Lsi10G003080	Cucsa.085270	Cucumber (Gy14) v1	cgylsiB092
Lsi10G003080	CmaCh02G004400	Cucurbita maxima (Rimu)	cmalsiB548
Lsi10G003080	CmaCh20G008890	Cucurbita maxima (Rimu)	cmalsiB507
Lsi10G003080	CmoCh02G004460	Cucurbita moschata (Rifu)	cmolsiB533
Lsi10G003080	ClCG09G017480	Watermelon (Charleston Gray)	lsiwcgB034
Lsi10G003080	Cla97C09G178900	Watermelon (97103) v2	lsiwmbB070
Lsi10G003080	Bhi10G001690	Wax gourd	lsiwgoB080
Lsi10G003080	CsGy2G011650	Cucumber (Gy14) v2	cgyblsiB086
Lsi10G003080	Carg22984	Silver-seed gourd	carlsiB808
Lsi10G003080	Carg24060	Silver-seed gourd	carlsiB961
Lsi10G003080	Carg23617	Silver-seed gourd	carlsiB731
Lsi10G003080	CsaV3_2G014140	Cucumber (Chinese Long) v3	cuclsiB104

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi10G003080	Cucumber (Gy14) v2	cgyblsiB459
Lsi10G003080	Melon (DHL92) v3.6.1	lsimedB059
Lsi10G003080	Silver-seed gourd	carlsiB185
Lsi10G003080	Watermelon (97103) v2	lsiwmbB056
Lsi10G003080	Wax gourd	lsiwgoB062
Lsi10G003080	Wax gourd	lsiwgoB074
Lsi10G003080	Bottle gourd (USVL1VR-Ls)	lsilsiB021
Lsi10G003080	Cucumber (Gy14) v1	cgylsiB360
Lsi10G003080	Cucurbita maxima (Rimu)	cmalsiB087
Lsi10G003080	Cucurbita maxima (Rimu)	cmalsiB469
Lsi10G003080	Cucurbita moschata (Rifu)	cmolsiB454
Lsi10G003080	Cucurbita moschata (Rifu)	cmolsiB491
Lsi10G003080	Cucurbita pepo (Zucchini)	cpelsiB195
Lsi10G003080	Cucurbita pepo (Zucchini)	cpelsiB220
Lsi10G003080	Cucurbita pepo (Zucchini)	cpelsiB525
Lsi10G003080	Cucurbita pepo (Zucchini)	cpelsiB589
Lsi10G003080	Wild cucumber (PI 183967)	cpilsiB502
Lsi10G003080	Cucumber (Chinese Long) v2	culsiB093
Lsi10G003080	Cucumber (Chinese Long) v2	culsiB492
Lsi10G003080	Melon (DHL92) v3.5.1	lsimeB057
Lsi10G003080	Watermelon (Charleston Gray)	lsiwcgB057
Lsi10G003080	Watermelon (97103) v1	lsiwmB043
Lsi10G003080	Watermelon (97103) v1	lsiwmB079