Lsi10G002820 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi10G002820
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionF-box protein
Locationchr10 : 4517234 .. 4518424 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCTTCCTAACGACCTCGTATTGGAGATTTTGAGCTGGCTGCCACTCGACCGAGCTAGTAAAATTCGAGCCCTCTCAAAGTCTCGTAACAAAGTTAGTTACCACTCTTACTATAAAGAGTTAGCTTACCAACACCAACGCGAACCTGTCTTAGATGGCTTCCTCTTCTACACTCTTGGTTTCAGTGCCAAAGTATTGTCATTTGTTTCTCCACAACCTGATAACAACTCGCCACTCTTAGATTTATCCTTGAGTTACCTCCCGGGTCGTAATCCTAAAATCCAAGCCGTTGCTCCGAATGGTCTTCTCTTATGCGAAACTCGACATTCAATTCATTACGATAAAATTTTCTACATGATTACTAAACTTTCCACAAAGCAATGGAAAGGACTTCCCATTCCAAAAACTCGATTTTATACCGAAAATATTGCTATGTACGTTATTCGTTCAAATCCTCTCCACTTTAAAATCCTTCGTTTATCCCAAGATGAAATTCCCTCCAAACGCCCTATGCCATTTGCCCACACCATTTGTGAGATATTTGACTCTGAATCTTGGCGATGGAAACAACAATTAAATGATCTTGTACATGATAATGATTCAGGATTTGTTGAGTCTAATCGTGCTCCTGTTTTTGTTTATGGATCAGCTCATTGGAAATTCAATAATAAAACTTCAATATTCACTTTCGATTTCCACTCCGAAAATTGGTCTAGAATTGCAATGCCAGATATTATAATTAAAGAGCATGAGGATATAATAAAAAATGGTAGTTTTCCAAGATGGCAAATTGAACTTGTGGAATACGAAGGAAAGTTGGGAGTAATGAGGGAATTTCATGGACTTTCTACCGAGCTATGGATCATGGAGAAATTTAATTACAATGAAAGAATTTGGACAAAAAAGTGTGATTTTTCGAAGTTTATGCCTATTGCTCTTTATGGATCAAATATTTTTATGACTTGGTTATATAATGATAATAATGTGATATTCTCTAATATAGAGACAGGAGAATACAATTACAAGAAGTTGGAACAATGTCGTTATAGTATGTCGATGGTGTTTCCATTCTTATCGGATTTTAAGAGTTGGAATTTTGATCCTCCGAAGCGTTCAATCAAGCCAAAGACTATGCCTAAAATCCTTCGCAAAAATGAAATACATATGGTAGAAGAATTGAACCTCTAA

mRNA sequence

ATGGAGCTTCCTAACGACCTCGTATTGGAGATTTTGAGCTGGCTGCCACTCGACCGAGCTAGTAAAATTCGAGCCCTCTCAAAGTCTCGTAACAAAGTTAGTTACCACTCTTACTATAAAGAGTTAGCTTACCAACACCAACGCGAACCTGTCTTAGATGGCTTCCTCTTCTACACTCTTGGTTTCAGTGCCAAAGTATTGTCATTTGTTTCTCCACAACCTGATAACAACTCGCCACTCTTAGATTTATCCTTGAGTTACCTCCCGGGTCGTAATCCTAAAATCCAAGCCGTTGCTCCGAATGGTCTTCTCTTATGCGAAACTCGACATTCAATTCATTACGATAAAATTTTCTACATGATTACTAAACTTTCCACAAAGCAATGGAAAGGACTTCCCATTCCAAAAACTCGATTTTATACCGAAAATATTGCTATGTACGTTATTCGTTCAAATCCTCTCCACTTTAAAATCCTTCGTTTATCCCAAGATGAAATTCCCTCCAAACGCCCTATGCCATTTGCCCACACCATTTGTGAGATATTTGACTCTGAATCTTGGCGATGGAAACAACAATTAAATGATCTTGTACATGATAATGATTCAGGATTTGTTGAGTCTAATCGTGCTCCTGTTTTTGTTTATGGATCAGCTCATTGGAAATTCAATAATAAAACTTCAATATTCACTTTCGATTTCCACTCCGAAAATTGGTCTAGAATTGCAATGCCAGATATTATAATTAAAGAGCATGAGGATATAATAAAAAATGGTAGTTTTCCAAGATGGCAAATTGAACTTGTGGAATACGAAGGAAAGTTGGGAGTAATGAGGGAATTTCATGGACTTTCTACCGAGCTATGGATCATGGAGAAATTTAATTACAATGAAAGAATTTGGACAAAAAAGTGTGATTTTTCGAAGTTTATGCCTATTGCTCTTTATGGATCAAATATTTTTATGACTTGGTTATATAATGATAATAATGTGATATTCTCTAATATAGAGACAGGAGAATACAATTACAAGAAGTTGGAACAATGTCGTTATAGTATGTCGATGGTGTTTCCATTCTTATCGGATTTTAAGAGTTGGAATTTTGATCCTCCGAAGCGTTCAATCAAGCCAAAGACTATGCCTAAAATCCTTCGCAAAAATGAAATACATATGGTAGAAGAATTGAACCTCTAA

Coding sequence (CDS)

ATGGAGCTTCCTAACGACCTCGTATTGGAGATTTTGAGCTGGCTGCCACTCGACCGAGCTAGTAAAATTCGAGCCCTCTCAAAGTCTCGTAACAAAGTTAGTTACCACTCTTACTATAAAGAGTTAGCTTACCAACACCAACGCGAACCTGTCTTAGATGGCTTCCTCTTCTACACTCTTGGTTTCAGTGCCAAAGTATTGTCATTTGTTTCTCCACAACCTGATAACAACTCGCCACTCTTAGATTTATCCTTGAGTTACCTCCCGGGTCGTAATCCTAAAATCCAAGCCGTTGCTCCGAATGGTCTTCTCTTATGCGAAACTCGACATTCAATTCATTACGATAAAATTTTCTACATGATTACTAAACTTTCCACAAAGCAATGGAAAGGACTTCCCATTCCAAAAACTCGATTTTATACCGAAAATATTGCTATGTACGTTATTCGTTCAAATCCTCTCCACTTTAAAATCCTTCGTTTATCCCAAGATGAAATTCCCTCCAAACGCCCTATGCCATTTGCCCACACCATTTGTGAGATATTTGACTCTGAATCTTGGCGATGGAAACAACAATTAAATGATCTTGTACATGATAATGATTCAGGATTTGTTGAGTCTAATCGTGCTCCTGTTTTTGTTTATGGATCAGCTCATTGGAAATTCAATAATAAAACTTCAATATTCACTTTCGATTTCCACTCCGAAAATTGGTCTAGAATTGCAATGCCAGATATTATAATTAAAGAGCATGAGGATATAATAAAAAATGGTAGTTTTCCAAGATGGCAAATTGAACTTGTGGAATACGAAGGAAAGTTGGGAGTAATGAGGGAATTTCATGGACTTTCTACCGAGCTATGGATCATGGAGAAATTTAATTACAATGAAAGAATTTGGACAAAAAAGTGTGATTTTTCGAAGTTTATGCCTATTGCTCTTTATGGATCAAATATTTTTATGACTTGGTTATATAATGATAATAATGTGATATTCTCTAATATAGAGACAGGAGAATACAATTACAAGAAGTTGGAACAATGTCGTTATAGTATGTCGATGGTGTTTCCATTCTTATCGGATTTTAAGAGTTGGAATTTTGATCCTCCGAAGCGTTCAATCAAGCCAAAGACTATGCCTAAAATCCTTCGCAAAAATGAAATACATATGGTAGAAGAATTGAACCTCTAA

Protein sequence

MELPNDLVLEILSWLPLDRASKIRALSKSRNKVSYHSYYKELAYQHQREPVLDGFLFYTLGFSAKVLSFVSPQPDNNSPLLDLSLSYLPGRNPKIQAVAPNGLLLCETRHSIHYDKIFYMITKLSTKQWKGLPIPKTRFYTENIAMYVIRSNPLHFKILRLSQDEIPSKRPMPFAHTICEIFDSESWRWKQQLNDLVHDNDSGFVESNRAPVFVYGSAHWKFNNKTSIFTFDFHSENWSRIAMPDIIIKEHEDIIKNGSFPRWQIELVEYEGKLGVMREFHGLSTELWIMEKFNYNERIWTKKCDFSKFMPIALYGSNIFMTWLYNDNNVIFSNIETGEYNYKKLEQCRYSMSMVFPFLSDFKSWNFDPPKRSIKPKTMPKILRKNEIHMVEELNL
Homology
[Close]
BLAST of Lsi10G002820 vs. Swiss-Prot
Match: FB279_ARATH (F-box protein At5g41720 OS=Arabidopsis thaliana GN=At5g41720 PE=2 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.8e-10
Identity = 59/167 (35.33%), Postives = 88/167 (52.69%), Query Frame = 1 

Query: 3   LPNDLVLEILSWLPLDRASKIRALSKSRNKVSYHSYYKELAYQHQREPVLDGFLFYTLG- 62
           L  D++LEI+S+ P    +K R LSK  NK SY   +    + H+    L G++FY    
Sbjct: 7   LDYDVLLEIMSYCPATEMAKFRLLSKECNKRSYEMSFIN-RHLHRTNSFL-GYIFYYKDN 66

Query: 63  -FSAKVLSFVS--PQPDNNSPLLDLSLSYLPGR-NPKIQAV-APNGLLLCETRHSIHYDK 122
            +      FVS   + D N     ++L++LP   N  I+A    +G+LLC         K
Sbjct: 67  KWFRNHSCFVSGVDEKDKNR----INLAFLPPLCNVSIEACDTHHGILLCVDVVFKGRQK 126

Query: 123 I-FYMITKLSTKQWKGLPIPKTRFYTENIAMYVIRSNPLHFKILRLS 163
           I  Y++ K +TKQ++ +P PKTRF T    + VI SNP  +KI+R+S
Sbjct: 127 IPDYIVCKPATKQYRIIPNPKTRFGTVATGLMVISSNPFRYKIIRVS 167

[Close]
BLAST of Lsi10G002820 vs. TrEMBL
Match: A0A0A0LBP1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G785420 PE=4 SV=1)

HSP 1 Score: 432.2 bits (1110), Expect = 6.9e-118
Identity = 227/400 (56.75%), Postives = 289/400 (72.25%), Query Frame = 1 

Query: 1   MELPNDLVLEILSWLPLDRASKIRALSKSRNKVSYHSYYKELAYQHQREPVLDGFLFYTL 60
           M+ P D+VLEILS   L++A KI+ LSK  N  SY+SYYK L  ++Q   + DGFL  + 
Sbjct: 1   MDFPEDVVLEILSRFYLNQAGKIQGLSKFYNNSSYNSYYKTLIAKNQ-PGIADGFLLQSP 60

Query: 61  GFSAK--VLSFVSPQPDNNSPLLDLSLSYLPGRNPKIQAVAPNGLLLCETRHSIHYDK-I 120
              +   ++SFVSP  D+    L+LSLS+LPG NPKI+AVAPNGLLLCE++HSI ++K  
Sbjct: 61  VPKSNDYIVSFVSPHKDSPVVPLNLSLSFLPGLNPKIRAVAPNGLLLCESQHSIRHNKRS 120

Query: 121 FYMITKLSTKQWKGLPIPKTRFYTENIAMYVIRSNPLHFKILRLSQDEIPSKRPMPFAHT 180
            Y ITKL T+QWKGLPIPKTR++T+NIAM+V+RSNPLHFKILRLS D+IPSKRP+PF++T
Sbjct: 121 IYTITKLCTQQWKGLPIPKTRYFTKNIAMHVLRSNPLHFKILRLSSDKIPSKRPLPFSYT 180

Query: 181 ICEIFDSESWRWKQQLNDLVHD--NDSGFVESNRAPVFVYGSAHWKFNNKTSIFTFDFHS 240
           I E+FDS+SWRWK  L+D+VHD   +  FV+SNRAPVF  G AHWKF   T+IF FDF+S
Sbjct: 181 IIEVFDSKSWRWK-LLDDIVHDYYGNFEFVDSNRAPVFANGLAHWKFTGNTTIFAFDFYS 240

Query: 241 ENWSRIAMPDIIIKEHE----DIIKNGSFPRWQIELVEYEGKLGVMREFH-----GLSTE 300
           + WS+IAMP+ I+ +      + I   S   W+ ELVEYEGKLGV+REFH        TE
Sbjct: 241 DTWSKIAMPETIVNDENNSRVNAISVNSVREWRTELVEYEGKLGVLREFHQPFAPTALTE 300

Query: 301 LWIMEKFNYNERIWTKKCDFSKFMPIALYGSNIFMTWLYN-DNNVIFSNIETGEYNYKKL 360
           LW+M K     + W KK +FS+ MP  LYGS+I +TWL +  + V FSN  TG+ NYK L
Sbjct: 301 LWVMHK-----KFWMKKLEFSRLMPTTLYGSDILVTWLSDYPSKVKFSNEVTGDCNYKTL 360

Query: 361 EQCRYSMSMVFPFLSDFKSWNFDPPKRSIKPKTMPKILRK 386
           EQ       VFPFLSDFKSWNF+PP+RSI+PK++ KILR+
Sbjct: 361 EQWHNIAPTVFPFLSDFKSWNFNPPQRSIQPKSLAKILRR 393

[Close]
BLAST of Lsi10G002820 vs. TrEMBL
Match: V4U5Z5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10007128mg PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.9e-38
Identity = 134/408 (32.84%), Postives = 208/408 (50.98%), Query Frame = 1 

Query: 6   DLVLEILSWLPLDRASKIRALSKSRNKVSYHSYYKELAYQHQREPVLDGFLFYTLGFSAK 65
           D++ EILS   L    + R +SK  N ++Y SY+  L  Q  R   + GFL  ++     
Sbjct: 9   DILSEILSRATLQTVGRCRLVSKECNDLTYRSYFMHLHCQRTR--TISGFLLASMMSHKH 68

Query: 66  VLSFVSPQPDNNSPLLDLSLSYLPGRNPKIQAVAPNGLLLC-ETRHSIHYDKIFYMITKL 125
              FVS   DNN P + +SL +LPG   +I A    GLLLC  +R   H    +Y + K 
Sbjct: 69  PAEFVST--DNNIPNI-VSLRFLPGC-ARILACTNQGLLLCLNSRPKCHRIPEYY-VCKP 128

Query: 126 STKQWKGLPIPKTRFYTENIAMYVIRSNPLHFKILRLSQDEIPS-----KRPMPFAHTI- 185
           +TK+W+ +P PKTR++  N+AM V+R +PL +KI+RLS+   PS      R   + H   
Sbjct: 129 TTKEWQQIPNPKTRYFARNVAMMVLRLDPLRYKIIRLSE---PSHLRNLNRKHAYEHCFC 188

Query: 186 CEIFDSESWRWKQQLNDLVHDNDSGFVESNRAPVFVYGSAHWKFNNKTSIFTFDFHSENW 245
           CE+FDSE W W+ QL ++    D   V +++  +   G+ HW  + K +I  F+   E W
Sbjct: 189 CEVFDSERWAWR-QLEEMYFPYDE--VLTSKPAISACGAFHWLTSEK-NILAFNADDETW 248

Query: 246 SRIAMPDIIIKEHEDIIKNGSFPRWQIELVEYEGKLGVMREFHGLST--ELWIMEKFNYN 305
           + +++P        D + N S+    ++L  Y+GKL  +R+  G     ELW+ME + + 
Sbjct: 249 TMLSVP--------DAVNNKSY---YLQLAGYQGKLACLRKERGREDCFELWVMEDY-FG 308

Query: 306 ERIWTKKCDFS--------KFM-PIALYGSNIFMTWLYNDNNVIFSNIETGEYNYKKLEQ 365
           +++W KK   S        +F+ P ALY +   +   Y D  V F     G ++  KL+ 
Sbjct: 309 KKLWNKKHTVSTKPLQIEERFVSPEALYNAENALVRSYYD-RVYFYKFADGSFDAVKLKN 368

Query: 366 CRYSMSMVFPFLSDFKSWNFDPPKR-SIKPKTMPK--ILRKNE-IHMV 392
             Y    +FPF SDF+  N    +R    P+  P+  + R NE IH++
Sbjct: 369 GHYDQG-IFPFQSDFEPSNLRICRRFKNHPRQRPRRSLQRCNEFIHLL 388

[Close]
BLAST of Lsi10G002820 vs. TrEMBL
Match: U5FZE9_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0010s23130g PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.7e-36
Identity = 123/374 (32.89%), Postives = 184/374 (49.20%), Query Frame = 1 

Query: 2   ELPNDLVLEILSWLPLDRASKIRALSKSRNKVSYHSYYKELAYQHQREPVLDGFLFYTLG 61
           +  +D++ EIL+   ++   + R LSK  N ++Y S +  L + H R   + G+   ++ 
Sbjct: 5   DFSSDIIYEILTRSSMETVGRCRLLSKECNSITYDSIFTNL-HSH-RTNTISGYFMQSMM 64

Query: 62  FSAKVLSFVSPQPDNNSPLLDLSLSYLPGRNPKIQAVAPNGLLLCETRHSIHYDKIFYMI 121
            +    SFVS           LSL++LP R  +IQ     G+LLC T H  +Y      +
Sbjct: 65  SNRFYSSFVSIDSTTWRSYPKLSLNFLPDR-VEIQGSTNQGILLCRTHHPRYY------V 124

Query: 122 TKLSTKQWKGLPIPKTRFYTENIAMYVIRSNPLHFKILRLSQDE--IPSKRPMPFAHTIC 181
            K +TKQW+ +P PKTR++T    M VIRSNPLH+KI R SQ +     K    +    C
Sbjct: 125 CKPTTKQWRRIPNPKTRYHTIATGMIVIRSNPLHYKIARFSQPKTRCHDKEFFQYYWVRC 184

Query: 182 EIFDSESWRWKQQLNDLVHDNDSGFVESNRAPVFVYGSAHWKFNNKTSIFTFDFHSENWS 241
           E+FDS++W WK QL+++   N      S +  V V GS HW    + +IF F    E++S
Sbjct: 185 ELFDSKTWTWK-QLDEVKLQNHESL--SRKPAVSVSGSLHWLTWVENNIFAFHVSKESYS 244

Query: 242 RIAMPDIIIKEHEDIIKNGSFPRWQIELVEYEGKLGVMREFHGLST-ELWIMEKFNYNER 301
             ++P  +   H++  K+       IELVEY GKL V       S+ ELW+ME  NY + 
Sbjct: 245 MFSLP--LSVSHDNKGKD-------IELVEYMGKLAVTCIGKDESSMELWVME--NYGKT 304

Query: 302 IWTKKCDFS---------KFMPIALYGSNIFMTWLYNDNNVIFSNIETGEYNYKKLEQCR 361
            W K+   +            P A Y ++I +   Y D+ V F N + G ++   LE   
Sbjct: 305 EWNKRYKINIEALRRKEPDTRPAAFYNADIVLMKEY-DHRVTFFNFKNGSFDRLSLE--N 352

Query: 362 YSMSMVFPFLSDFK 364
                 F F SDF+
Sbjct: 365 NVNRGCFRFQSDFE 352

[Close]
BLAST of Lsi10G002820 vs. TrEMBL
Match: A0A061GJI1_THECC (F-box associated ubiquitination effector family protein OS=Theobroma cacao GN=TCM_029110 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 2.8e-34
Identity = 121/369 (32.79%), Postives = 184/369 (49.86%), Query Frame = 1 

Query: 3   LPNDLVLEILSWLPLDRASKIRALSKSRNKVSYHSYYKELAYQHQREPVLDGFLFYTLGF 62
           LP D + EIL+ + L+   + R ++K  N V+Y   + +L  +  R  +L GF    LG 
Sbjct: 25  LPQDPMFEILTRVSLETLERCRLVNKEWNHVTYEPSFMKLYCK--RNGILSGFFIQCLG- 84

Query: 63  SAKVLSFVSPQPDNNSPLLD--LSLSYLPGRNPKIQAVAPNGLLLCETRHSIHYDKIFYM 122
               L   +      +P  D  LSL  LP     ++AV+  GL+ CE+  S      F+ 
Sbjct: 85  ----LKLYTAFASQGNPFQDRSLSLDMLPVL-AIVRAVSNQGLVYCESLRSR-----FHY 144

Query: 123 ITKLSTKQWKGLPIPKTRFYTENIAMYVIRSNPLHFKILRLSQDEIPSKRPMPFAHTICE 182
           + K +T +W  +P PKTRF T   AM V+ S PLH+K++RLS+ +  S+        ICE
Sbjct: 145 VCKPTTGEWVKIPNPKTRFTTYRNAMVVLHSRPLHYKVVRLSEPKDASRG----CTIICE 204

Query: 183 IFDSESWRWKQQLNDLVHDNDSGFVESNRA-PVFVYGSAHWKFNNKTSIFTFDFHSENWS 242
           IFDSE   WK+    L +   SGFV  + A PVF  G+ HW F     IF FD +SE W 
Sbjct: 205 IFDSEKGAWKR----LENIKSSGFVLLSEAPPVFASGAFHW-FTFSQQIFAFDINSEKWE 264

Query: 243 RIAMPDIIIKEHEDIIKNGSFPRWQIELVEYEGKLGVMREFHGL-STELWIMEKFNYNER 302
            I +P+    E    +K          LV+YEGKL ++R    +   E+W+ME  NY+ R
Sbjct: 265 LIDLPENFTDETTFYLKKA--------LVQYEGKLALLRYAMDVDKVEIWVME--NYSRR 324

Query: 303 IW--TKKCDFSKFMP--IALYGSNIFMTWLYNDNNVIFSNIETGEYNYKKLEQCRYSMSM 362
            W   ++   S +    + LY S++ +   Y D  +++ ++  G     K     +S + 
Sbjct: 325 TWKLAREIVNSAYEDTIVHLYRSDVAVVINYKD--LVWYDLNNGTSTTTKGSHIFFSRN- 358

Query: 363 VFPFLSDFK 364
           V+PF SD++
Sbjct: 385 VYPFESDYE 358

[Close]
BLAST of Lsi10G002820 vs. TrEMBL
Match: A0A061GMD8_THECC (F-box associated ubiquitination effector family protein, putative OS=Theobroma cacao GN=TCM_037569 PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 3.6e-34
Identity = 123/396 (31.06%), Postives = 195/396 (49.24%), Query Frame = 1 

Query: 2   ELPNDLVLEILSWLPLDRASKIRALSKSRNKVSYHSYYKELAYQHQREPVLDGFLFYTLG 61
           +L +D++ EILS +PL    + R LS+  N ++Y S +  L    QR   + G+   T  
Sbjct: 5   DLSSDVMFEILSRMPLKMLRRCRLLSRECNSLTYESSFMRL--HCQRTNTIAGYFIQTSK 64

Query: 62  FSAKVLSFVSPQPDNNSPLLD-LSLSYLPGRNPKIQAVAPNGLLLCETRHSIHYDKIFYM 121
            S    +F S   DN     D L+L +LP     I+A A  GL+LCE++ S +     Y 
Sbjct: 65  KSRGYSTFCSI--DNPGVASDQLTLDFLP-ETVHIRATADQGLMLCESQRSQNR----YY 124

Query: 122 ITKLSTKQWKGLPIPKTRFYTENIAMYVIRSNPLHFKILRLS-----QDEIPSKRPMP-- 181
           + K  T+QW+ +P P  R++T   AM VI S+PL FK++RLS     + E+ S+   P  
Sbjct: 125 VCKPGTRQWETIPNPNPRYFTCKTAMLVIGSDPLRFKLVRLSDPEPKEAELESEYSEPEL 184

Query: 182 --FAHTICEIFDSESWRWKQQLNDLVHDNDSGFVESNRAPVFVYGSAHW--KFNNKTSIF 241
             +    CEIFDSE W WK QL+D++   D  F +   A +  YG  HW     +K +I 
Sbjct: 185 DNYRRYPCEIFDSEIWAWK-QLDDVMLSYDE-FFDLGHA-ISAYGGLHWLTSTGDKKNIL 244

Query: 242 TFDFHSENWSRIAMPDIIIKEHEDIIKNGSFPRWQIELVEYEGKLGVMREFHGLS-TELW 301
           +F+   E+W  +++P+     H D         + + L EYEGKL ++ +   +   ELW
Sbjct: 245 SFNEDKESWESVSLPESFC--HGDHC-------YHVNLAEYEGKLALIYQRPEIPLLELW 304

Query: 302 IMEKFNYNERIWTKK-----CDFSK----FMPIALYGSN-IFMTWLYNDNNVIFSNIETG 361
           +M+  +Y  ++W+KK      DF K    +    LY ++ IFM   Y     IF N + G
Sbjct: 305 VMK--DYYGKLWSKKHRVNLADFCKENGFYSAYTLYNADMIFMQGYY---TAIFYNFKNG 364

Query: 362 EYNYKKLEQCRYSMSMVFPFLSDFKSWNFDPPKRSI 375
           +++  +L          F F +D++      P+  +
Sbjct: 365 QFDRLRLPSTHMFSESAFFFQTDYEPIILRQPREKL 374

[Close]
BLAST of Lsi10G002820 vs. TAIR10
Match: AT5G41720.1 (AT5G41720.1 BEST Arabidopsis thaliana protein match is: F-box protein-related (TAIR:AT1G64290.1))

HSP 1 Score: 68.6 bits (166), Expect = 1.0e-11
Identity = 59/167 (35.33%), Postives = 88/167 (52.69%), Query Frame = 1 

Query: 3   LPNDLVLEILSWLPLDRASKIRALSKSRNKVSYHSYYKELAYQHQREPVLDGFLFYTLG- 62
           L  D++LEI+S+ P    +K R LSK  NK SY   +    + H+    L G++FY    
Sbjct: 7   LDYDVLLEIMSYCPATEMAKFRLLSKECNKRSYEMSFIN-RHLHRTNSFL-GYIFYYKDN 66

Query: 63  -FSAKVLSFVS--PQPDNNSPLLDLSLSYLPGR-NPKIQAV-APNGLLLCETRHSIHYDK 122
            +      FVS   + D N     ++L++LP   N  I+A    +G+LLC         K
Sbjct: 67  KWFRNHSCFVSGVDEKDKNR----INLAFLPPLCNVSIEACDTHHGILLCVDVVFKGRQK 126

Query: 123 I-FYMITKLSTKQWKGLPIPKTRFYTENIAMYVIRSNPLHFKILRLS 163
           I  Y++ K +TKQ++ +P PKTRF T    + VI SNP  +KI+R+S
Sbjct: 127 IPDYIVCKPATKQYRIIPNPKTRFGTVATGLMVISSNPFRYKIIRVS 167

[Close]
BLAST of Lsi10G002820 vs. NCBI nr
Match: gi|659085782|ref|XP_008443600.1| (PREDICTED: uncharacterized protein LOC103487156 [Cucumis melo])

HSP 1 Score: 492.3 bits (1266), Expect = 8.1e-136
Identity = 247/404 (61.14%), Postives = 312/404 (77.23%), Query Frame = 1 

Query: 1   MELPNDLVLEILSWLPLDRASKIRALSKSRNKVSYHSYYKELAYQHQREPVLDGFLFYT- 60
           M+LP+D++LEIL    L++A KI+ LSK  NK SY   YK L  ++  +P+LDGFL  + 
Sbjct: 1   MDLPDDVILEILIRFSLNQAGKIQTLSKFYNKTSYSFCYKTLISENHSQPILDGFLLQSP 60

Query: 61  -LGFSAKVLSFVSPQPDNNSPLLDLSLSYLPGRNPKIQAVAPNGLLLCETRHSIHYDK-I 120
               +A +LSFVSP P+NNSP L+LSL++LPG NP+I+AVAPNGLLLCET+HSI ++K +
Sbjct: 61  KSKSNAHLLSFVSPHPNNNSPPLNLSLNFLPGLNPQIRAVAPNGLLLCETQHSIRHNKRL 120

Query: 121 FYMITKLSTKQWKGLPIPKTRFYTENIAMYVIRSNPLHFKILRLSQDEIPSKRPMPFAHT 180
            Y ITKLST+QWKGLPIPKTR++T NIAMYV+RSNPLHFKILRLS D+IPSKRP+PF +T
Sbjct: 121 IYTITKLSTQQWKGLPIPKTRYFTSNIAMYVLRSNPLHFKILRLSSDKIPSKRPLPFCYT 180

Query: 181 ICEIFDSESWRWKQQLNDLVH--DNDSGFVESNRAPVFVYGSAHWKFNNKTSIFTFDFHS 240
           ICE+FDSESWRWK QL+D+VH     + +V+S RAPVF YG AHWKF + TSIF FDF+S
Sbjct: 181 ICEVFDSESWRWK-QLDDIVHYYCGKTEYVDSQRAPVFAYGLAHWKFRDDTSIFAFDFYS 240

Query: 241 ENWSRIAMPDIIIKEHEDIIKNGSFPRWQIELVEYEGKLGVMREFH--GLSTELWIMEKF 300
           E WS+IAMP+ I+ +  +   +  F RW IELVEYEGKLGV+REFH   + TELW+ME +
Sbjct: 241 ETWSKIAMPETIVNDKNN-SSSSHFQRWHIELVEYEGKLGVVREFHKPTVFTELWVMENY 300

Query: 301 NYNERIWTKKCDFSKFMPIALYGSNIFMTWLYND-NNVIFSNIETGEYNYKKLEQCRYSM 360
              +++W KK D S  MP   YGS+I M WL++D +NV+FSNIETGE NYKK EQ    +
Sbjct: 301 G-KKKMWMKKLDSSGSMPTTFYGSDIQMMWLHDDSSNVMFSNIETGERNYKKSEQSHRHL 360

Query: 361 SMVFPFLSDFKSWNFDPPKRSIKPKTMPKILRKNEIHMVEELNL 397
            MVFPFLSDF++WNF+PP RSIKPK + KILR+N+   +EELNL
Sbjct: 361 PMVFPFLSDFETWNFNPPPRSIKPKAVSKILRRNDRCKLEELNL 401

[Close]
BLAST of Lsi10G002820 vs. NCBI nr
Match: gi|449437890|ref|XP_004136723.1| (PREDICTED: F-box protein At5g49610 [Cucumis sativus])

HSP 1 Score: 432.2 bits (1110), Expect = 9.9e-118
Identity = 227/400 (56.75%), Postives = 289/400 (72.25%), Query Frame = 1 

Query: 1   MELPNDLVLEILSWLPLDRASKIRALSKSRNKVSYHSYYKELAYQHQREPVLDGFLFYTL 60
           M+ P D+VLEILS   L++A KI+ LSK  N  SY+SYYK L  ++Q   + DGFL  + 
Sbjct: 1   MDFPEDVVLEILSRFYLNQAGKIQGLSKFYNNSSYNSYYKTLIAKNQ-PGIADGFLLQSP 60

Query: 61  GFSAK--VLSFVSPQPDNNSPLLDLSLSYLPGRNPKIQAVAPNGLLLCETRHSIHYDK-I 120
              +   ++SFVSP  D+    L+LSLS+LPG NPKI+AVAPNGLLLCE++HSI ++K  
Sbjct: 61  VPKSNDYIVSFVSPHKDSPVVPLNLSLSFLPGLNPKIRAVAPNGLLLCESQHSIRHNKRS 120

Query: 121 FYMITKLSTKQWKGLPIPKTRFYTENIAMYVIRSNPLHFKILRLSQDEIPSKRPMPFAHT 180
            Y ITKL T+QWKGLPIPKTR++T+NIAM+V+RSNPLHFKILRLS D+IPSKRP+PF++T
Sbjct: 121 IYTITKLCTQQWKGLPIPKTRYFTKNIAMHVLRSNPLHFKILRLSSDKIPSKRPLPFSYT 180

Query: 181 ICEIFDSESWRWKQQLNDLVHD--NDSGFVESNRAPVFVYGSAHWKFNNKTSIFTFDFHS 240
           I E+FDS+SWRWK  L+D+VHD   +  FV+SNRAPVF  G AHWKF   T+IF FDF+S
Sbjct: 181 IIEVFDSKSWRWK-LLDDIVHDYYGNFEFVDSNRAPVFANGLAHWKFTGNTTIFAFDFYS 240

Query: 241 ENWSRIAMPDIIIKEHE----DIIKNGSFPRWQIELVEYEGKLGVMREFH-----GLSTE 300
           + WS+IAMP+ I+ +      + I   S   W+ ELVEYEGKLGV+REFH        TE
Sbjct: 241 DTWSKIAMPETIVNDENNSRVNAISVNSVREWRTELVEYEGKLGVLREFHQPFAPTALTE 300

Query: 301 LWIMEKFNYNERIWTKKCDFSKFMPIALYGSNIFMTWLYN-DNNVIFSNIETGEYNYKKL 360
           LW+M K     + W KK +FS+ MP  LYGS+I +TWL +  + V FSN  TG+ NYK L
Sbjct: 301 LWVMHK-----KFWMKKLEFSRLMPTTLYGSDILVTWLSDYPSKVKFSNEVTGDCNYKTL 360

Query: 361 EQCRYSMSMVFPFLSDFKSWNFDPPKRSIKPKTMPKILRK 386
           EQ       VFPFLSDFKSWNF+PP+RSI+PK++ KILR+
Sbjct: 361 EQWHNIAPTVFPFLSDFKSWNFNPPQRSIQPKSLAKILRR 393

[Close]
BLAST of Lsi10G002820 vs. NCBI nr
Match: gi|567857402|ref|XP_006421384.1| (hypothetical protein CICLE_v10007128mg [Citrus clementina])

HSP 1 Score: 168.3 bits (425), Expect = 2.7e-38
Identity = 134/408 (32.84%), Postives = 208/408 (50.98%), Query Frame = 1 

Query: 6   DLVLEILSWLPLDRASKIRALSKSRNKVSYHSYYKELAYQHQREPVLDGFLFYTLGFSAK 65
           D++ EILS   L    + R +SK  N ++Y SY+  L  Q  R   + GFL  ++     
Sbjct: 9   DILSEILSRATLQTVGRCRLVSKECNDLTYRSYFMHLHCQRTR--TISGFLLASMMSHKH 68

Query: 66  VLSFVSPQPDNNSPLLDLSLSYLPGRNPKIQAVAPNGLLLC-ETRHSIHYDKIFYMITKL 125
              FVS   DNN P + +SL +LPG   +I A    GLLLC  +R   H    +Y + K 
Sbjct: 69  PAEFVST--DNNIPNI-VSLRFLPGC-ARILACTNQGLLLCLNSRPKCHRIPEYY-VCKP 128

Query: 126 STKQWKGLPIPKTRFYTENIAMYVIRSNPLHFKILRLSQDEIPS-----KRPMPFAHTI- 185
           +TK+W+ +P PKTR++  N+AM V+R +PL +KI+RLS+   PS      R   + H   
Sbjct: 129 TTKEWQQIPNPKTRYFARNVAMMVLRLDPLRYKIIRLSE---PSHLRNLNRKHAYEHCFC 188

Query: 186 CEIFDSESWRWKQQLNDLVHDNDSGFVESNRAPVFVYGSAHWKFNNKTSIFTFDFHSENW 245
           CE+FDSE W W+ QL ++    D   V +++  +   G+ HW  + K +I  F+   E W
Sbjct: 189 CEVFDSERWAWR-QLEEMYFPYDE--VLTSKPAISACGAFHWLTSEK-NILAFNADDETW 248

Query: 246 SRIAMPDIIIKEHEDIIKNGSFPRWQIELVEYEGKLGVMREFHGLST--ELWIMEKFNYN 305
           + +++P        D + N S+    ++L  Y+GKL  +R+  G     ELW+ME + + 
Sbjct: 249 TMLSVP--------DAVNNKSY---YLQLAGYQGKLACLRKERGREDCFELWVMEDY-FG 308

Query: 306 ERIWTKKCDFS--------KFM-PIALYGSNIFMTWLYNDNNVIFSNIETGEYNYKKLEQ 365
           +++W KK   S        +F+ P ALY +   +   Y D  V F     G ++  KL+ 
Sbjct: 309 KKLWNKKHTVSTKPLQIEERFVSPEALYNAENALVRSYYD-RVYFYKFADGSFDAVKLKN 368

Query: 366 CRYSMSMVFPFLSDFKSWNFDPPKR-SIKPKTMPK--ILRKNE-IHMV 392
             Y    +FPF SDF+  N    +R    P+  P+  + R NE IH++
Sbjct: 369 GHYDQG-IFPFQSDFEPSNLRICRRFKNHPRQRPRRSLQRCNEFIHLL 388

[Close]
BLAST of Lsi10G002820 vs. NCBI nr
Match: gi|470105187|ref|XP_004288968.1| (PREDICTED: putative F-box protein At4g10190 [Fragaria vesca subsp. vesca])

HSP 1 Score: 163.7 bits (413), Expect = 6.6e-37
Identity = 117/383 (30.55%), Postives = 193/383 (50.39%), Query Frame = 1 

Query: 2   ELPNDLVLEILSWLPLDRASKIRALSKSRNKVSYHSYYKELAYQHQREPVLDGFLFYTLG 61
           +LP+D V EIL+   L+   + R++SK  N+V+Y S + +L  Q  R  ++ GF   +L 
Sbjct: 6   KLPDDAVFEILTRSSLETLGRCRSISKEWNRVTYESTFHQLLCQ--RSNIVSGFFIQSLV 65

Query: 62  FSAKVLSFVSPQPDNNSPLLDLSLSYLPGRNPKIQAVAPNGLLLCETRHSIHYDKIFYMI 121
            S    +FVS   D +S    LSL +L  + P     A  GLL+C  +++       Y++
Sbjct: 66  NSQLSSTFVSLDTDASSTSA-LSLDFL--KVPVQIEAANQGLLVCVNQNNR------YLV 125

Query: 122 TKLSTKQWKGLPIPKTRFYTENIAMYVIRSNPLHFKILRLSQDEIPSKRPMPF-AHTICE 181
            K +TKQW  +P PKT++ T + A+ V++SNPL +KI+R SQ + P KR   F  H  CE
Sbjct: 126 CKPTTKQWVKIPNPKTKYPTASTALLVLKSNPLKYKIIRFSQAKKPVKRKSEFWRHVRCE 185

Query: 182 IFDSESWRWKQQLNDLVHDNDSGFVESNRAPVFVYGSAHWKFNNKTSIFTFDFHSENWSR 241
           IF+S +W WK +L D++    + F     + V   G  HW  ++   +F F   +ENW  
Sbjct: 186 IFNSTTWAWK-RLKDVILPCKTFFANKEDSVVAANGGLHWLLSD-NQVFAFYEDAENWEM 245

Query: 242 IAMPDIIIKEHEDIIKNGSFPRWQIELVEYEGKLGVMREFHGLSTELWIMEKFNYNERIW 301
            ++P          + NG      + L EY+G+L V+R       ++W+ME  +Y  ++W
Sbjct: 246 FSLP-------PSAVDNGGHKSKPL-LAEYQGRLAVIRSGEEF-MDMWVME--DYGRKLW 305

Query: 302 --TKKCDFSKFMPIALYGSNIFM------TWLYNDNNVIFSNIETGEYNYKKLEQCRYSM 361
             T+  +  K     +Y S +         ++   + V+F N + G+ +  +L+   Y  
Sbjct: 306 SATRAWNIKKLCGEEIYPSPLAFHNGDAALFMAAFDKVMFYNFQEGKSHKIRLQ---YHP 361

Query: 362 SMVFPFLSDFKSWNFDPPKRSIK 376
             +F F SD +  N + P R +K
Sbjct: 366 HQIFKFQSDMEEVNLERPDRVLK 361

[Close]
BLAST of Lsi10G002820 vs. NCBI nr
Match: gi|743895635|ref|XP_011041088.1| (PREDICTED: F-box protein At5g03970-like [Populus euphratica])

HSP 1 Score: 163.3 bits (412), Expect = 8.6e-37
Identity = 120/374 (32.09%), Postives = 184/374 (49.20%), Query Frame = 1 

Query: 2   ELPNDLVLEILSWLPLDRASKIRALSKSRNKVSYHSYYKELAYQHQREPVLDGFLFYTLG 61
           +L +D++ EIL+   ++   + R LSK  N+++Y S +  L    +R   + G+   ++ 
Sbjct: 5   DLSSDIIYEILTRSSMETVGRCRVLSKECNRITYDSIFTNL--HSERTNTVSGYFMQSMM 64

Query: 62  FSAKVLSFVSPQPDNNSPLLDLSLSYLPGRNPKIQAVAPNGLLLCETRHSIHYDKIFYMI 121
            +    SFVS     +     LSL++LP R  +IQ     G+LLC T H  +Y      +
Sbjct: 65  SNRFYSSFVSIDATTSRSYPKLSLNFLPDR-VEIQGSTNQGILLCRTHHPRYY------V 124

Query: 122 TKLSTKQWKGLPIPKTRFYTENIAMYVIRSNPLHFKILRLSQDE--IPSKRPMPFAHTIC 181
            K +TKQW+ +P PKTR+++    M VIRSNPLH+KI+R SQ +     K    +    C
Sbjct: 125 CKPTTKQWRRIPNPKTRYHSLATGMIVIRSNPLHYKIVRFSQPKARCHDKEFFQYYWVRC 184

Query: 182 EIFDSESWRWKQQLNDLVHDNDSGFVESNRAPVFVYGSAHWKFNNKTSIFTFDFHSENWS 241
           E+FDS++W+WK QL+++   N      S    V V GS HW    + +IF F    E++S
Sbjct: 185 ELFDSKTWKWK-QLDEVKLQNHESL--SREPAVSVSGSLHWLTWAENNIFAFHVSKESYS 244

Query: 242 RIAMPDIIIKEHEDIIKNGSFPRWQIELVEYEGKLGVMREFHGLST-ELWIMEKFNYNER 301
             ++P  + ++ +            IELVEY GKL V       S+ ELW+ME  NY + 
Sbjct: 245 IFSLPLSVSEDSKG---------KDIELVEYMGKLAVTCIGKDESSMELWVME--NYGKA 304

Query: 302 IWTKKCDFS---------KFMPIALYGSNIFMTWLYNDNNVIFSNIETGEYNYKKLEQCR 361
            W K+   +            P A Y ++I +   YN + V F N + G  +   LE   
Sbjct: 305 EWNKRYKINIEALRRKEPDTRPAAFYNADIVLMKEYN-HRVTFLNFKNGSIDRLSLE--N 352

Query: 362 YSMSMVFPFLSDFK 364
                 F F SDF+
Sbjct: 365 NVNRGCFRFQSDFE 352

The following BLAST results are available for this feature:
BLAST of Lsi10G002820 vs. Swiss-Prot
Match NameE-valueIdentityDescription
FB279_ARATH1.8e-1035.33F-box protein At5g41720 OS=Arabidopsis thaliana GN=At5g41720 PE=2 SV=1[more]
BLAST of Lsi10G002820 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LBP1_CUCSA6.9e-11856.75Uncharacterized protein OS=Cucumis sativus GN=Csa_3G785420 PE=4 SV=1[more]
V4U5Z5_9ROSI1.9e-3832.84Uncharacterized protein OS=Citrus clementina GN=CICLE_v10007128mg PE=4 SV=1[more]
U5FZE9_POPTR1.7e-3632.89Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0010s23130g P... [more]
A0A061GJI1_THECC2.8e-3432.79F-box associated ubiquitination effector family protein OS=Theobroma cacao GN=TC... [more]
A0A061GMD8_THECC3.6e-3431.06F-box associated ubiquitination effector family protein, putative OS=Theobroma c... [more]
BLAST of Lsi10G002820 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G41720.11.0e-1135.33 BEST Arabidopsis thaliana protein match is: F-box protein-related (T... [more]
BLAST of Lsi10G002820 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659085782|ref|XP_008443600.1|8.1e-13661.14PREDICTED: uncharacterized protein LOC103487156 [Cucumis melo][more]
gi|449437890|ref|XP_004136723.1|9.9e-11856.75PREDICTED: F-box protein At5g49610 [Cucumis sativus][more]
gi|567857402|ref|XP_006421384.1|2.7e-3832.84hypothetical protein CICLE_v10007128mg [Citrus clementina][more]
gi|470105187|ref|XP_004288968.1|6.6e-3730.55PREDICTED: putative F-box protein At4g10190 [Fragaria vesca subsp. vesca][more]
gi|743895635|ref|XP_011041088.1|8.6e-3732.09PREDICTED: F-box protein At5g03970-like [Populus euphratica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR017451F-box-assoc_interact_dom
IPR015915Kelch-typ_b-propeller
IPR013187F-box-assoc_dom_typ3
IPR011043Gal_Oxase/kelch_b-propeller
IPR001810F-box_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi10G002820.1Lsi10G002820.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001810F-box domainPROFILEPS50181FBOXcoord: 1..42
score: 8
IPR011043Galactose oxidase/kelch, beta-propellerunknownSSF50965Galactose oxidase, central domaincoord: 176..368
score: 6.2
IPR013187F-box associated domain, type 3PFAMPF08268FBA_3coord: 214..305
score: 4.
IPR015915Kelch-type beta propellerGENE3DG3DSA:2.120.10.80coord: 179..346
score: 9.
IPR017451F-box associated interaction domainTIGRFAMsTIGR01640TIGR01640coord: 125..333
score: 4.3
NoneNo IPR availablePANTHERPTHR32133FAMILY NOT NAMEDcoord: 2..341
score: 1.5
NoneNo IPR availablePANTHERPTHR32133:SF139F-BOX ASSOCIATED UBIQUITINATION EFFECTOR FAMILY PROTEINcoord: 2..341
score: 1.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi10G002820ClCG09G017180Watermelon (Charleston Gray)lsiwcgB034
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi10G002820Cucumber (Chinese Long) v3cuclsiB105
Lsi10G002820Watermelon (97103) v2lsiwmbB070
Lsi10G002820Wax gourdlsiwgoB074
Lsi10G002820Cucumber (Gy14) v1cgylsiB520
Lsi10G002820Cucurbita maxima (Rimu)cmalsiB507
Lsi10G002820Cucurbita maxima (Rimu)cmalsiB548
Lsi10G002820Cucurbita moschata (Rifu)cmolsiB491
Lsi10G002820Cucurbita moschata (Rifu)cmolsiB533
Lsi10G002820Cucurbita pepo (Zucchini)cpelsiB220
Lsi10G002820Cucurbita pepo (Zucchini)cpelsiB589
Lsi10G002820Wild cucumber (PI 183967)cpilsiB092
Lsi10G002820Cucumber (Chinese Long) v2culsiB094
Lsi10G002820Melon (DHL92) v3.5.1lsimeB047
Lsi10G002820Watermelon (97103) v1lsiwmB043
Lsi10G002820Cucumber (Gy14) v2cgyblsiB087
Lsi10G002820Melon (DHL92) v3.6.1lsimedB049
Lsi10G002820Melon (DHL92) v3.6.1lsimedB059
Lsi10G002820Silver-seed gourdcarlsiB731
Lsi10G002820Silver-seed gourdcarlsiB961