Lsi10G000980 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi10G000980
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description50S ribosomal protein L30
Locationchr10 : 1552782 .. 1554024 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATAATGTCCAGCAACCCAAATGGAAAATAAGTAATAACTAAATGAAAAAACAGAAAAATAAAACAATCAAACCCTAAAATCAGATTTCCCTCACAAACCCACAGCCTACGATCTTCTCTTCGTCAGTTCGTCGTCAACGCAAGCCCCTCCTCATCTTCTTCTTGTTTATTCGACTGAGCAACTCTATTTTCCAGACCTACGCCGTTCGCCGCCGAGCGTCAACCGACCACGCCTCAACCTCGCCATTGACCATCTCGCCGCCCTTTGCCTTGTCGCCGCCACCGCCGGTAAATTTCAAAGCTCTCTGTTTTCTCCCTCTTTTTTCACTCTCTTTTGAAACCTCCTTTAACTTTAACCTAAATTATTATGTAGATAGTTCTTAATTTTTTAGATTGACAAATCGCCGGATCCTATCGTATTTGTCTCTCGTATTAGTATCTGTGTCTGTACTTCATAGCTTTTTACTTTCTAGAACATTTCTTTTAGAGGACTTTATCGAAAGCTTCAAGTGGATATGAAGATGAAGTAAGTATCTATTTGAGATGAAAAATCGTGGCATAGATGTGGTTTCTACTTAAAACTATCATCTATATCTTTTTATGTTTTAGTTGTGCAACTAGAGCATTTGGTAGAGCTTTCAATCTATTGAAGATGTTCATTTGTTTACTCGAAATTTGGAAACTGCAAAAGTTATCCTGCCCAACAAATTAAAAGATTTTGTTGAGGTGCTTAGATGAGATTGTTGATATGTTTGCAGAGAAAACTGTTTCTTAATCTTTGTTTTGTAGATTTTGGAGATCTTGGACATGAATGCCTTCAAGGCCTTCAAAGCCAATGTCCCAATTGCATGGAGTCCTAATCTTTATATCACATTAGTGAGAGGCATGCCGGGAACAAGGAGACTTCACAGACGCACAATAGAGGCGTTGCGGCTGCGAAAATGCAACCGAACTGTCATGCGCTGGAACACACCTACTGTTAGGGGAATGCTTCAACAGGTTGCTTTATATACATGTTCTCTACTGCGCTCATGCACACACTACAGAAAAGTCTCATGGGGACTGAATGTTGAATGCTGTTGTTTGTTTTTTTTGTTATTTGATTGTAGGTAAAGCGATTAATTGTGGTTGAAACAGAAGAAATGTATAAAGCTCGTAAACAGAAGGTGGAACAGCACAAGGCTCTCCGACCTCCGTTAGTTGTAAATCACCTTCCGGCTTCAAGCTCTGCTCCTGCCTCTTGA

mRNA sequence

ATAATGTCCAGCAACCCAAATGGAAAATAAGTAATAACTAAATGAAAAAACAGAAAAATAAAACAATCAAACCCTAAAATCAGATTTCCCTCACAAACCCACAGCCTACGATCTTCTCTTCGTCAGTTCGTCGTCAACGCAAGCCCCTCCTCATCTTCTTCTTGTTTATTCGACTGAGCAACTCTATTTTCCAGACCTACGCCGTTCGCCGCCGAGCGTCAACCGACCACGCCTCAACCTCGCCATTGACCATCTCGCCGCCCTTTGCCTTGTCGCCGCCACCGCCGATTTTGGAGATCTTGGACATGAATGCCTTCAAGGCCTTCAAAGCCAATGTCCCAATTGCATGGAGTCCTAATCTTTATATCACATTAGTGAGAGGCATGCCGGGAACAAGGAGACTTCACAGACGCACAATAGAGGCGTTGCGGCTGCGAAAATGCAACCGAACTGTCATGCGCTGGAACACACCTACTGTTAGGGGAATGCTTCAACAGGTAAAGCGATTAATTGTGGTTGAAACAGAAGAAATGTATAAAGCTCGTAAACAGAAGGTGGAACAGCACAAGGCTCTCCGACCTCCGTTAGTTGTAAATCACCTTCCGGCTTCAAGCTCTGCTCCTGCCTCTTGA

Coding sequence (CDS)

ATGAATGCCTTCAAGGCCTTCAAAGCCAATGTCCCAATTGCATGGAGTCCTAATCTTTATATCACATTAGTGAGAGGCATGCCGGGAACAAGGAGACTTCACAGACGCACAATAGAGGCGTTGCGGCTGCGAAAATGCAACCGAACTGTCATGCGCTGGAACACACCTACTGTTAGGGGAATGCTTCAACAGGTAAAGCGATTAATTGTGGTTGAAACAGAAGAAATGTATAAAGCTCGTAAACAGAAGGTGGAACAGCACAAGGCTCTCCGACCTCCGTTAGTTGTAAATCACCTTCCGGCTTCAAGCTCTGCTCCTGCCTCTTGA

Protein sequence

MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTIEALRLRKCNRTVMRWNTPTVRGMLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLPASSSAPAS
BLAST of Lsi10G000980 vs. TrEMBL
Match: A0A0A0LN29_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G416090 PE=3 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 4.6e-48
Identity = 98/108 (90.74%), Postives = 105/108 (97.22%), Query Frame = 1

Query: 1   MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTIEALRLRKCNRTVMRWNTPTVRG 60
           MNAFKAFKA+VPIAWS NLYITLVRGMPGTRRLHRRT+EALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 61  MLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLPASSSAPAS 109
           M+QQVKRL+VVETEEMYKARKQK+EQH+ALRPPLV+NHLPA SSA AS
Sbjct: 61  MIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINHLPAPSSASAS 108

BLAST of Lsi10G000980 vs. TrEMBL
Match: M5XB62_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012731mg PE=3 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 1.1e-46
Identity = 93/104 (89.42%), Postives = 102/104 (98.08%), Query Frame = 1

Query: 1   MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTIEALRLRKCNRTVMRWNTPTVRG 60
           MNAFKAFKA+VPIAWSPNLYITLVRG+PGTRRLHRRT+EALRLRKCNRTVMRWNTPTVRG
Sbjct: 51  MNAFKAFKASVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 110

Query: 61  MLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLPASSS 105
           MLQQVKRL+V+ETEEMYKARKQ +E H+ALRPPLV+NHLPAS+S
Sbjct: 111 MLQQVKRLVVIETEEMYKARKQNLENHRALRPPLVINHLPASAS 154

BLAST of Lsi10G000980 vs. TrEMBL
Match: A0A067FF83_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033963mg PE=3 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 1.4e-44
Identity = 89/104 (85.58%), Postives = 100/104 (96.15%), Query Frame = 1

Query: 1   MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTIEALRLRKCNRTVMRWNTPTVRG 60
           MNAFKAFKA VPI WSPNLYITLVRGMPGTRRLHRRT+EALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKACVPIEWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 61  MLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLPASSS 105
           MLQQVKRL+V+ETEEMYKARK+K+  H+ALRPP+V+NHLP+S++
Sbjct: 61  MLQQVKRLVVIETEEMYKARKEKLANHQALRPPMVINHLPSSTT 104

BLAST of Lsi10G000980 vs. TrEMBL
Match: B9GTU5_POPTR (Ribosomal protein L30 OS=Populus trichocarpa GN=POPTR_0002s21620g PE=3 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 1.8e-44
Identity = 90/105 (85.71%), Postives = 100/105 (95.24%), Query Frame = 1

Query: 1   MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTIEALRLRKCNRTVMRWNTPTVRG 60
           MNAFKAFKA VPIAWSP+LYITLVRG+PGTRRLHRRT+EALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKAQVPIAWSPHLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 61  MLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLPASSSA 106
           MLQQVKRL+V+ETEEMYKARKQ    H+A+RPPLV+NHLPAS+S+
Sbjct: 61  MLQQVKRLVVIETEEMYKARKQNDVNHRAVRPPLVINHLPASASS 105

BLAST of Lsi10G000980 vs. TrEMBL
Match: V4UT17_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009985mg PE=3 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 5.2e-44
Identity = 89/104 (85.58%), Postives = 99/104 (95.19%), Query Frame = 1

Query: 1   MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTIEALRLRKCNRTVMRWNTPTVRG 60
           MNAFKAFKA VPI WSPNLYITLVRGMPGTRRLHRRT+EALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKACVPIEWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 61  MLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLPASSS 105
           MLQQVKRL+V+ETEEMYKARK+K+  H+ALRPPLV+NHL +S++
Sbjct: 61  MLQQVKRLVVIETEEMYKARKEKLANHRALRPPLVINHLSSSTT 104

BLAST of Lsi10G000980 vs. TAIR10
Match: AT5G55140.1 (AT5G55140.1 ribosomal protein L30 family protein)

HSP 1 Score: 140.2 bits (352), Expect = 7.5e-34
Identity = 70/109 (64.22%), Postives = 89/109 (81.65%), Query Frame = 1

Query: 1   MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTIEALRLRKCNRTVMRWNTPTVRG 60
           M+ F+AFKA VPI WS +LYITLVRG+PGTR+LHRRT+EA+ LR+C+RTV+  N  ++RG
Sbjct: 1   MSGFRAFKAQVPIEWSQSLYITLVRGLPGTRKLHRRTLEAMGLRRCHRTVLHSNNSSIRG 60

Query: 61  MLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNH-LPASSSAPAS 109
           M+ QVKR++VVETEEMY ARK+    HKALRPPLVV+H  PA+ S+  S
Sbjct: 61  MIDQVKRMVVVETEEMYNARKEAEANHKALRPPLVVSHSSPATDSSNMS 109

BLAST of Lsi10G000980 vs. NCBI nr
Match: gi|659111837|ref|XP_008455933.1| (PREDICTED: uncharacterized protein LOC103495997 [Cucumis melo])

HSP 1 Score: 200.3 bits (508), Expect = 1.7e-48
Identity = 98/108 (90.74%), Postives = 106/108 (98.15%), Query Frame = 1

Query: 1   MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTIEALRLRKCNRTVMRWNTPTVRG 60
           MNAFKAFKA+VPIAWSPNLYITLVRGMPGTRRLHRRT+EALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKASVPIAWSPNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 61  MLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLPASSSAPAS 109
           M+QQVKRL+VVETEEMYKARKQK+E+H+ALRPPLV+NHLPA SSA AS
Sbjct: 61  MIQQVKRLVVVETEEMYKARKQKMEEHRALRPPLVINHLPAPSSASAS 108

BLAST of Lsi10G000980 vs. NCBI nr
Match: gi|449468386|ref|XP_004151902.1| (PREDICTED: uncharacterized protein LOC101219925 [Cucumis sativus])

HSP 1 Score: 198.4 bits (503), Expect = 6.6e-48
Identity = 98/108 (90.74%), Postives = 105/108 (97.22%), Query Frame = 1

Query: 1   MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTIEALRLRKCNRTVMRWNTPTVRG 60
           MNAFKAFKA+VPIAWS NLYITLVRGMPGTRRLHRRT+EALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKASVPIAWSTNLYITLVRGMPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 61  MLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLPASSSAPAS 109
           M+QQVKRL+VVETEEMYKARKQK+EQH+ALRPPLV+NHLPA SSA AS
Sbjct: 61  MIQQVKRLVVVETEEMYKARKQKMEQHRALRPPLVINHLPAPSSASAS 108

BLAST of Lsi10G000980 vs. NCBI nr
Match: gi|645247803|ref|XP_008230006.1| (PREDICTED: uncharacterized protein LOC103329330 [Prunus mume])

HSP 1 Score: 193.7 bits (491), Expect = 1.6e-46
Identity = 93/104 (89.42%), Postives = 102/104 (98.08%), Query Frame = 1

Query: 1   MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTIEALRLRKCNRTVMRWNTPTVRG 60
           MNAFKAFKA+VPIAWSPNLYITLVRG+PGTRRLHRRT+EALRLRKCNRTVMRWNTPTVRG
Sbjct: 1   MNAFKAFKASVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 60

Query: 61  MLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLPASSS 105
           MLQQVKRL+V+ETEEMYKARKQ +E H+ALRPPLV+NHLPAS+S
Sbjct: 61  MLQQVKRLVVIETEEMYKARKQNLENHRALRPPLVINHLPASAS 104

BLAST of Lsi10G000980 vs. NCBI nr
Match: gi|595927871|ref|XP_007215101.1| (hypothetical protein PRUPE_ppa012731mg [Prunus persica])

HSP 1 Score: 193.7 bits (491), Expect = 1.6e-46
Identity = 93/104 (89.42%), Postives = 102/104 (98.08%), Query Frame = 1

Query: 1   MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTIEALRLRKCNRTVMRWNTPTVRG 60
           MNAFKAFKA+VPIAWSPNLYITLVRG+PGTRRLHRRT+EALRLRKCNRTVMRWNTPTVRG
Sbjct: 51  MNAFKAFKASVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 110

Query: 61  MLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLPASSS 105
           MLQQVKRL+V+ETEEMYKARKQ +E H+ALRPPLV+NHLPAS+S
Sbjct: 111 MLQQVKRLVVIETEEMYKARKQNLENHRALRPPLVINHLPASAS 154

BLAST of Lsi10G000980 vs. NCBI nr
Match: gi|764613434|ref|XP_004304095.2| (PREDICTED: uncharacterized protein LOC101304309 [Fragaria vesca subsp. vesca])

HSP 1 Score: 188.3 bits (477), Expect = 6.8e-45
Identity = 91/108 (84.26%), Postives = 101/108 (93.52%), Query Frame = 1

Query: 1   MNAFKAFKANVPIAWSPNLYITLVRGMPGTRRLHRRTIEALRLRKCNRTVMRWNTPTVRG 60
           MNAFKAFK NVPIAWSPNLYITLVRG+PGTRRLHRRT+EALRLRKCNRTVMRWNTPTVRG
Sbjct: 41  MNAFKAFKTNVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRG 100

Query: 61  MLQQVKRLIVVETEEMYKARKQKVEQHKALRPPLVVNHLPASSSAPAS 109
           M+QQVKRL+VVETEEMYKARKQK   H+A RPPL++NHLPAS++  +S
Sbjct: 101 MIQQVKRLVVVETEEMYKARKQKDADHRAPRPPLIINHLPASANGSSS 148

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LN29_CUCSA4.6e-4890.74Uncharacterized protein OS=Cucumis sativus GN=Csa_2G416090 PE=3 SV=1[more]
M5XB62_PRUPE1.1e-4689.42Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012731mg PE=3 SV=1[more]
A0A067FF83_CITSI1.4e-4485.58Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033963mg PE=3 SV=1[more]
B9GTU5_POPTR1.8e-4485.71Ribosomal protein L30 OS=Populus trichocarpa GN=POPTR_0002s21620g PE=3 SV=1[more]
V4UT17_9ROSI5.2e-4485.58Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009985mg PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT5G55140.17.5e-3464.22 ribosomal protein L30 family protein[more]
Match NameE-valueIdentityDescription
gi|659111837|ref|XP_008455933.1|1.7e-4890.74PREDICTED: uncharacterized protein LOC103495997 [Cucumis melo][more]
gi|449468386|ref|XP_004151902.1|6.6e-4890.74PREDICTED: uncharacterized protein LOC101219925 [Cucumis sativus][more]
gi|645247803|ref|XP_008230006.1|1.6e-4689.42PREDICTED: uncharacterized protein LOC103329330 [Prunus mume][more]
gi|595927871|ref|XP_007215101.1|1.6e-4689.42hypothetical protein PRUPE_ppa012731mg [Prunus persica][more]
gi|764613434|ref|XP_004304095.2|6.8e-4584.26PREDICTED: uncharacterized protein LOC101304309 [Fragaria vesca subsp. vesca][more]
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0015934large ribosomal subunit
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR016082Ribosomal_L30_ferredoxin-like
IPR005996Ribosomal_L30_bac-type
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0015934 large ribosomal subunit
cellular_component GO:0005739 mitochondrion
molecular_function GO:0003735 structural constituent of ribosome

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi10G000980.1Lsi10G000980.1mRNA


Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005996Ribosomal protein L30, bacterial-typeHAMAPMF_01371_BRibosomal_L30_Bcoord: 16..73
score: 14
IPR005996Ribosomal protein L30, bacterial-typeTIGRFAMsTIGR01308TIGR01308coord: 19..72
score: 2.7
IPR016082Ribosomal protein L30, ferredoxin-like fold domainGENE3DG3DSA:3.30.1390.20coord: 18..73
score: 2.0
IPR016082Ribosomal protein L30, ferredoxin-like fold domainPFAMPF00327Ribosomal_L30coord: 20..69
score: 9.6
IPR016082Ribosomal protein L30, ferredoxin-like fold domainunknownSSF55129Ribosomal protein L30p/L7ecoord: 18..72
score: 2.35
NoneNo IPR availablePANTHERPTHR15892MITOCHONDRIAL RIBOSOMAL PROTEIN L30coord: 1..102
score: 7.4

The following gene(s) are paralogous to this gene:

None