Lsi10G000920 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi10G000920
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionRas-like GTP-binding protein RHO
Locationchr10 : 1501452 .. 1503639 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AACACTATCACCCAACGCCCTCAATTCGGCTGTATTCCTTTTTGGGTTTTTGGCCGTCCGCTTAAAGAAACAGAAAGCTTTTGGCAGCAATCAATGGCAAAGGCCTAAAAGAACACAACCCAAAAGTGGAACCCGGATTCGAAGTTTGTTCAGATTATTAAATGCCCTTCTCCACCCCCTCCATTTCTATTCAAATTTCAAACCCAAATCCCACTTCTTCTTCTTCTTCTTCTTCTTCTTCATACCTTTCGTTATCTTCTTTCTTCCCTTTTCCTATCTGCCTTTATACAGTCTTTTCAATTACTTGCTCCTCTTTTTTTACCAATGGAGACTGAGAAACAAAATTCAGAGAAGTGGGTAATTTTCTGAGCTGAGAGATTGTTGCAATTGCAATTGGTGAAGGTGTAAAGACAATACTCAAAAGGGGTTTTCGAAATGAGTACGGCTCGATTCATCAAGTGCGTTACTGTTGGAGATGGGGCTGTGGGGAAAACTTGCATGCTCATCTCCTACACTAGCAACACTTTCCCAACTGTAAGTTCATCTTCTCCATTTTTAGTTGCACATGGAAGCCTAAAAGCTGATTTGCCCTCTTTGATTTGCTGGGAATTCTTGTAGGACTATGTGCCGACAGTTTTTGATAATTTCAGTGCTAATGTGGTGGTGGATGGTAGCACCGTCAACCTGGGGCTTTGGGATACTGCTGGTCAGAAACTTTACTTTGTATGCACTTTTGAATTTGGGTTTCTGTTTGTGAGGATTGTGTTTGGCTTGGCATTGTTAATTTGGGAACAAGTATTGTAATAATTAAATTCATTGTAACCCATTAGCTTAGGTTTTGAGTTCAGGGGTGATTTAATAAATTCAGTTAATAGAAATTTAGGCTGATTGGTTAAAGCAAGAAAATGAAGCCCTTCATTGTTGGGTTATTTGGCAAATGCAGGACAGGAAGATTACAATAGGCTGAGGCCTTTGAGTTATAGAGGTGCTGATGTGTTTCTGTTGGCCTTTTCTCTAATCAGCAAAGCTAGCTATGAAAATATCTCCAAGAAGGTTGATTATCATCTACTCTCGTTAACTTTTTAAGTAATCAAGTATAATTTAATTTCTTGCTATTAGAATATATATCAGGCTTCTTATTTGATTTCTCAATTCACAGTGGATCCCCGAGTTGCGGCATTATGCCCCGACTGTGCCGATTGTTCTGGTCGGAACCAAACTTGGTAATAACATTTATGTTCAACTTCAAAAACATCAGGGAGAAGAAAAAACTGATAGAAGAAATTGATGGGTCATTTGATGTATAAATTGGTTACTTGTTTGCAGATTTAAGGGACGACAAGCAATTTCTGACTAGTCATCCCGGTGCTGTACCGATCACGACTGCTCAGGTATTGCTTTTAAAACGAACCACTTCTAGTAATGGTTTTCAAATTCATGGATCTGATGGGGGGGAAGTTCTTGATGGCCTTATTTGACAGGGTGAAGAACTGAAGAAATCAATTGGTGCTGCTGTTTACATAGAATGCAGCTCTAAAACTCAGCAGGTAACTGAAACTAAATATGTCATCTTATAGAAAAGACTAAAGAGCAATGAAAACAAATCTTTGATCTTGAAGATGTGTCAGTTAACAATCATCTGATGGGGTACACACAAGAAAATGGATATAATACTTAAGCTTCAGTTCAGCTATAAGATTTAGGCTTTGCTAGTAACCTAAACAGAGTTGTTTGATGCTATACTACTAACTGGAATCGAGTTGTGGAAAGTTTAACCGTGTCCCGAACCCCATTCTAACAGTTTTGATCAACTGATCTAATTTGCAGAATGTCAAGGCTGTGTTTGATGCTGCCATCAAGGTTGTTCTACAGCCACCAAAACTGAAGAGAAAGCGACGAAAGGCCAGAAAATGTGTGTTTCTTTGAGTTGGATTTCATGTCATAACTGTTTTCTCTTGAGGCAAACTTGGCCTCCTCTTCCAAATTCTGATGCCCTGTTATTCTGGCCTTGTTCATTGTACTTGCTTTCTATATTAATCTTCTTGTTTAATACGAAAGAGCTGATGTTTTTATGCTTTCAAAGAATATATATACATGAAGTTTCTATTGTGAAGAGATCTTTTTTACTTCTGGCCATGGGAAAGGAGAACCTCTGCACTTGAAAACACACTTGTTCCAAGGAAAAATG

mRNA sequence

AACACTATCACCCAACGCCCTCAATTCGGCTGTATTCCTTTTTGGGTTTTTGGCCGTCCGCTTAAAGAAACAGAAAGCTTTTGGCAGCAATCAATGGCAAAGGCCTAAAAGAACACAACCCAAAAGTGGAACCCGGATTCGAAGTTTGTTCAGATTATTAAATGCCCTTCTCCACCCCCTCCATTTCTATTCAAATTTCAAACCCAAATCCCACTTCTTCTTCTTCTTCTTCTTCTTCTTCATACCTTTCGTTATCTTCTTTCTTCCCTTTTCCTATCTGCCTTTATACAGTCTTTTCAATTACTTGCTCCTCTTTTTTTACCAATGGAGACTGAGAAACAAAATTCAGAGAAGTGGGTAATTTTCTGAGCTGAGAGATTGTTGCAATTGCAATTGGTGAAGGTGTAAAGACAATACTCAAAAGGGGTTTTCGAAATGAGTACGGCTCGATTCATCAAGTGCGTTACTGTTGGAGATGGGGCTGTGGGGAAAACTTGCATGCTCATCTCCTACACTAGCAACACTTTCCCAACTGACTATGTGCCGACAGTTTTTGATAATTTCAGTGCTAATGTGGTGGTGGATGGTAGCACCGTCAACCTGGGGCTTTGGGATACTGCTGGACAGGAAGATTACAATAGGCTGAGGCCTTTGAGTTATAGAGGTGCTGATGTGTTTCTGTTGGCCTTTTCTCTAATCAGCAAAGCTAGCTATGAAAATATCTCCAAGAAGTGGATCCCCGAGTTGCGGCATTATGCCCCGACTGTGCCGATTGTTCTGGTCGGAACCAAACTTGGTAATAACATTTATGTTCAACTTCAAAAACATCAGGGAGAAGAAAAAACTGATAGAAGAAATTGATGGGTCATTTGATGTATAAATTGGTTACTTGTTTGCAGATTTAAGGGACGACAAGCAATTTCTGACTAGTCATCCCGGTGCTGTACCGATCACGACTGCTCAGGGTGAAGAACTGAAGAAATCAATTGGTGCTGCTGTTTACATAGAATGCAGCTCTAAAACTCAGCAGAATGTCAAGGCTGTGTTTGATGCTGCCATCAAGGTTGTTCTACAGCCACCAAAACTGAAGAGAAAGCGACGAAAGGCCAGAAAATGTGTGTTTCTTTGAGTTGGATTTCATGTCATAACTGTTTTCTCTTGAGGCAAACTTGGCCTCCTCTTCCAAATTCTGATGCCCTGTTATTCTGGCCTTGTTCATTGTACTTGCTTTCTATATTAATCTTCTTGTTTAATACGAAAGAGCTGATGTTTTTATGCTTTCAAAGAATATATATACATGAAGTTTCTATTGTGAAGAGATCTTTTTTACTTCTGGCCATGGGAAAGGAGAACCTCTGCACTTGAAAACACACTTGTTCCAAGGAAAAATG

Coding sequence (CDS)

ATGAGTACGGCTCGATTCATCAAGTGCGTTACTGTTGGAGATGGGGCTGTGGGGAAAACTTGCATGCTCATCTCCTACACTAGCAACACTTTCCCAACTGACTATGTGCCGACAGTTTTTGATAATTTCAGTGCTAATGTGGTGGTGGATGGTAGCACCGTCAACCTGGGGCTTTGGGATACTGCTGGACAGGAAGATTACAATAGGCTGAGGCCTTTGAGTTATAGAGGTGCTGATGTGTTTCTGTTGGCCTTTTCTCTAATCAGCAAAGCTAGCTATGAAAATATCTCCAAGAAGTGGATCCCCGAGTTGCGGCATTATGCCCCGACTGTGCCGATTGTTCTGGTCGGAACCAAACTTGGTAATAACATTTATGTTCAACTTCAAAAACATCAGGGAGAAGAAAAAACTGATAGAAGAAATTGA

Protein sequence

MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKLGNNIYVQLQKHQGEEKTDRRN
Homology
[Close]
BLAST of Lsi10G000920 vs. Swiss-Prot
Match: RAC2_LOTJA (Rac-like GTP-binding protein RAC2 OS=Lotus japonicus GN=RAC2 PE=2 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 3.8e-64
Identity = 118/120 (98.33%), Postives = 120/120 (100.00%), Query Frame = 1 

Query: 1   MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD
Sbjct: 1   MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKL 120
           TAGQEDYNRLRPLSYRGADVFLLAFSL+S+ASYENISKKWIPELRHYAPTVPIVLVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLLSRASYENISKKWIPELRHYAPTVPIVLVGTKL 120

[Close]
BLAST of Lsi10G000920 vs. Swiss-Prot
Match: RAC7_ORYSJ (Rac-like GTP-binding protein 7 OS=Oryza sativa subsp. japonica GN=RAC7 PE=2 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 3.2e-63
Identity = 117/120 (97.50%), Postives = 118/120 (98.33%), Query Frame = 1 

Query: 1   MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG+TVNLGLWD
Sbjct: 1   MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKL 120
           TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENI KKWIPELRHYAP VPIVLVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWIPELRHYAPNVPIVLVGTKL 120

[Close]
BLAST of Lsi10G000920 vs. Swiss-Prot
Match: RAC5_ORYSJ (Rac-like GTP-binding protein 5 OS=Oryza sativa subsp. japonica GN=RAC5 PE=2 SV=2)

HSP 1 Score: 240.7 bits (613), Expect = 9.4e-63
Identity = 115/120 (95.83%), Postives = 118/120 (98.33%), Query Frame = 1 

Query: 1   MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MS +RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKL 120
           TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYEN+SKKWIPELRHYAP VPI+LVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVSKKWIPELRHYAPGVPIILVGTKL 120

[Close]
BLAST of Lsi10G000920 vs. Swiss-Prot
Match: RAC2_ARATH (Rac-like GTP-binding protein ARAC2 OS=Arabidopsis thaliana GN=ARAC2 PE=1 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 1.2e-62
Identity = 115/120 (95.83%), Postives = 118/120 (98.33%), Query Frame = 1 

Query: 1   MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD
Sbjct: 1   MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKL 120
           TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENI KKW+PEL+HYAP +PIVLVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPIVLVGTKL 120

[Close]
BLAST of Lsi10G000920 vs. Swiss-Prot
Match: RAC9_GOSHI (Rac-like GTP-binding protein RAC9 OS=Gossypium hirsutum GN=RAC9 PE=2 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 2.1e-62
Identity = 114/120 (95.00%), Postives = 118/120 (98.33%), Query Frame = 1 

Query: 1   MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           M+T+RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD
Sbjct: 1   MNTSRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKL 120
           TAGQEDYNRLRPLSYRGADVFLLAFSLIS+ASYEN+ KKWIPELRHYAP VPIVLVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISRASYENVHKKWIPELRHYAPNVPIVLVGTKL 120

[Close]
BLAST of Lsi10G000920 vs. TrEMBL
Match: A5CAD3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020433 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 1.7e-63
Identity = 121/122 (99.18%), Postives = 122/122 (100.00%), Query Frame = 1 

Query: 1   MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD
Sbjct: 1   MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKL 120
           TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKL 120

Query: 121 GN 123
           G+
Sbjct: 121 GH 122

[Close]
BLAST of Lsi10G000920 vs. TrEMBL
Match: A5AF38_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004502 PE=4 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 1.1e-62
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1 

Query: 1   MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD
Sbjct: 1   MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKL 120
           TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKL 120

[Close]
BLAST of Lsi10G000920 vs. TrEMBL
Match: A0A0A0LQB2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G415560 PE=4 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 1.1e-62
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1 

Query: 1   MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD
Sbjct: 1   MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKL 120
           TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKL 120

[Close]
BLAST of Lsi10G000920 vs. TrEMBL
Match: E0CTM2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g02630 PE=4 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 1.1e-62
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1 

Query: 1   MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD
Sbjct: 1   MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKL 120
           TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKL 120

[Close]
BLAST of Lsi10G000920 vs. TrEMBL
Match: D7TJG4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0003g00570 PE=4 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 1.1e-62
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1 

Query: 1   MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD
Sbjct: 1   MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKL 120
           TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKL 120

[Close]
BLAST of Lsi10G000920 vs. TAIR10
Match: AT5G45970.1 (AT5G45970.1 RAC-like 2)

HSP 1 Score: 240.4 bits (612), Expect = 7.0e-64
Identity = 115/120 (95.83%), Postives = 118/120 (98.33%), Query Frame = 1 

Query: 1   MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD
Sbjct: 1   MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKL 120
           TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENI KKW+PEL+HYAP +PIVLVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELKHYAPGIPIVLVGTKL 120

[Close]
BLAST of Lsi10G000920 vs. TAIR10
Match: AT1G75840.1 (AT1G75840.1 RAC-like GTP binding protein 5)

HSP 1 Score: 237.7 bits (605), Expect = 4.5e-63
Identity = 112/120 (93.33%), Postives = 118/120 (98.33%), Query Frame = 1 

Query: 1   MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MS +RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG+TVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKL 120
           TAGQEDYNRLRPLSYRGADVF+LAFSLISKASYEN++KKWIPELRHYAP VPI+LVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKL 120

[Close]
BLAST of Lsi10G000920 vs. TAIR10
Match: AT4G35020.1 (AT4G35020.1 RAC-like 3)

HSP 1 Score: 236.9 bits (603), Expect = 7.7e-63
Identity = 109/120 (90.83%), Postives = 118/120 (98.33%), Query Frame = 1 

Query: 1   MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MS +RFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANV+VDG+T+NLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVIVDGNTINLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKL 120
           TAGQEDYNRLRPLSYRGADVFLLAFSL+SKASYEN+SKKW+PELRHYAP VPI+LVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLVSKASYENVSKKWVPELRHYAPGVPIILVGTKL 120

[Close]
BLAST of Lsi10G000920 vs. TAIR10
Match: AT3G51300.1 (AT3G51300.1 RHO-related protein from plants 1)

HSP 1 Score: 235.7 bits (600), Expect = 1.7e-62
Identity = 111/120 (92.50%), Postives = 118/120 (98.33%), Query Frame = 1 

Query: 1   MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MS +RF+KCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+GSTVNLGLWD
Sbjct: 1   MSASRFVKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGSTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKL 120
           TAGQEDYNRLRPLSYRGADVF+LAFSLISKASYEN+SKKWIPEL+HYAP VPIVLVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKL 120

[Close]
BLAST of Lsi10G000920 vs. TAIR10
Match: AT4G35950.1 (AT4G35950.1 RAC-like 6)

HSP 1 Score: 235.0 bits (598), Expect = 2.9e-62
Identity = 111/120 (92.50%), Postives = 118/120 (98.33%), Query Frame = 1 

Query: 1   MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MS +RFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+G+TVNLGLWD
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKL 120
           TAGQEDYNRLRPLSYRGADVF+LAFSLISKASYEN+SKKWIPEL+HYAP VPIVLVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKL 120

[Close]
BLAST of Lsi10G000920 vs. NCBI nr
Match: gi|147866349|emb|CAN84145.1| (hypothetical protein VITISV_020433 [Vitis vinifera])

HSP 1 Score: 250.0 bits (637), Expect = 2.5e-63
Identity = 121/122 (99.18%), Postives = 122/122 (100.00%), Query Frame = 1 

Query: 1   MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD
Sbjct: 1   MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKL 120
           TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKL 120

Query: 121 GN 123
           G+
Sbjct: 121 GH 122

[Close]
BLAST of Lsi10G000920 vs. NCBI nr
Match: gi|449468388|ref|XP_004151903.1| (PREDICTED: rac-like GTP-binding protein RAC2 [Cucumis sativus])

HSP 1 Score: 247.3 bits (630), Expect = 1.6e-62
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1 

Query: 1   MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD
Sbjct: 1   MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKL 120
           TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKL 120

[Close]
BLAST of Lsi10G000920 vs. NCBI nr
Match: gi|225443550|ref|XP_002277471.1| (PREDICTED: rac-like GTP-binding protein RAC13 [Vitis vinifera])

HSP 1 Score: 247.3 bits (630), Expect = 1.6e-62
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1 

Query: 1   MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD
Sbjct: 1   MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKL 120
           TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKL 120

[Close]
BLAST of Lsi10G000920 vs. NCBI nr
Match: gi|147817694|emb|CAN77878.1| (hypothetical protein VITISV_004502 [Vitis vinifera])

HSP 1 Score: 247.3 bits (630), Expect = 1.6e-62
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1 

Query: 1   MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD
Sbjct: 1   MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKL 120
           TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKL 120

[Close]
BLAST of Lsi10G000920 vs. NCBI nr
Match: gi|225446515|ref|XP_002278788.1| (PREDICTED: rac-like GTP-binding protein RAC2 [Vitis vinifera])

HSP 1 Score: 247.3 bits (630), Expect = 1.6e-62
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 1 

Query: 1   MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60
           MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD
Sbjct: 1   MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKL 120
           TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKL
Sbjct: 61  TAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKL 120

The following BLAST results are available for this feature:
BLAST of Lsi10G000920 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RAC2_LOTJA3.8e-6498.33Rac-like GTP-binding protein RAC2 OS=Lotus japonicus GN=RAC2 PE=2 SV=1[more]
RAC7_ORYSJ3.2e-6397.50Rac-like GTP-binding protein 7 OS=Oryza sativa subsp. japonica GN=RAC7 PE=2 SV=1[more]
RAC5_ORYSJ9.4e-6395.83Rac-like GTP-binding protein 5 OS=Oryza sativa subsp. japonica GN=RAC5 PE=2 SV=2[more]
RAC2_ARATH1.2e-6295.83Rac-like GTP-binding protein ARAC2 OS=Arabidopsis thaliana GN=ARAC2 PE=1 SV=1[more]
RAC9_GOSHI2.1e-6295.00Rac-like GTP-binding protein RAC9 OS=Gossypium hirsutum GN=RAC9 PE=2 SV=1[more]
BLAST of Lsi10G000920 vs. TrEMBL
Match NameE-valueIdentityDescription
A5CAD3_VITVI1.7e-6399.18Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020433 PE=4 SV=1[more]
A5AF38_VITVI1.1e-62100.00Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004502 PE=4 SV=1[more]
A0A0A0LQB2_CUCSA1.1e-62100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G415560 PE=4 SV=1[more]
E0CTM2_VITVI1.1e-62100.00Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g02630 PE=4 SV=... [more]
D7TJG4_VITVI1.1e-62100.00Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0003g00570 PE=4 SV=... [more]
BLAST of Lsi10G000920 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G45970.17.0e-6495.83 RAC-like 2[more]
AT1G75840.14.5e-6393.33 RAC-like GTP binding protein 5[more]
AT4G35020.17.7e-6390.83 RAC-like 3[more]
AT3G51300.11.7e-6292.50 RHO-related protein from plants 1[more]
AT4G35950.12.9e-6292.50 RAC-like 6[more]
BLAST of Lsi10G000920 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|147866349|emb|CAN84145.1|2.5e-6399.18hypothetical protein VITISV_020433 [Vitis vinifera][more]
gi|449468388|ref|XP_004151903.1|1.6e-62100.00PREDICTED: rac-like GTP-binding protein RAC2 [Cucumis sativus][more]
gi|225443550|ref|XP_002277471.1|1.6e-62100.00PREDICTED: rac-like GTP-binding protein RAC13 [Vitis vinifera][more]
gi|147817694|emb|CAN77878.1|1.6e-62100.00hypothetical protein VITISV_004502 [Vitis vinifera][more]
gi|225446515|ref|XP_002278788.1|1.6e-62100.00PREDICTED: rac-like GTP-binding protein RAC2 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0007264small GTPase mediated signal transduction
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR005225Small_GTP-bd_dom
IPR001806Small_GTPase
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006687 glycosphingolipid metabolic process
biological_process GO:0015031 protein transport
biological_process GO:0007264 small GTPase mediated signal transduction
biological_process GO:0007015 actin filament organization
biological_process GO:0010413 glucuronoxylan metabolic process
biological_process GO:0009832 plant-type cell wall biogenesis
biological_process GO:0045492 xylan biosynthetic process
cellular_component GO:0005622 intracellular
cellular_component GO:0016020 membrane
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005886 plasma membrane
molecular_function GO:0005525 GTP binding
molecular_function GO:0004767 sphingomyelin phosphodiesterase activity
molecular_function GO:0003924 GTPase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi10G000920.1Lsi10G000920.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001806Small GTPase superfamilyPFAMPF00071Rascoord: 8..136
score: 3.7
IPR005225Small GTP-binding protein domainTIGRFAMsTIGR00231TIGR00231coord: 7..136
score: 1.5
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3DG3DSA:3.40.50.300coord: 7..121
score: 3.1
IPR027417P-loop containing nucleoside triphosphate hydrolaseunknownSSF52540P-loop containing nucleoside triphosphate hydrolasescoord: 6..120
score: 3.85
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 109..122
score: 2.3E-26coord: 30..46
score: 2.3E-26coord: 47..69
score: 2.3E-26coord: 7..28
score: 2.3
NoneNo IPR availablePANTHERPTHR24072RHO FAMILY GTPASEcoord: 1..120
score: 3.1E
NoneNo IPR availablePANTHERPTHR24072:SF167RAC-LIKE GTP-BINDING PROTEIN ARAC2coord: 1..120
score: 3.1E
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 4..141
score: 1.
NoneNo IPR availableSMARTSM00174rho_sub_3coord: 9..136
score: 1.4
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 7..139
score: 1.1
NoneNo IPR availablePROFILEPS51420RHOcoord: 1..141
score: 19

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi10G000920MELO3C019315.2Melon (DHL92) v3.6.1lsimedB054
Lsi10G000920MELO3C007243.2Melon (DHL92) v3.6.1lsimedB082
Lsi10G000920Cla97C02G036250Watermelon (97103) v2lsiwmbB059
Lsi10G000920Bhi03G000269Wax gourdlsiwgoB088
Lsi10G000920Bhi10G001074Wax gourdlsiwgoB069
Lsi10G000920Cp4.1LG16g04200Cucurbita pepo (Zucchini)cpelsiB221
Lsi10G000920CsGy2G025670Cucumber (Gy14) v2cgyblsiB087
Lsi10G000920Carg05118Silver-seed gourdcarlsiB739
Lsi10G000920Carg03112Silver-seed gourdcarlsiB304
Lsi10G000920CsaV3_6G050550Cucumber (Chinese Long) v3cuclsiB436
Lsi10G000920CsaV3_2G034580Cucumber (Chinese Long) v3cuclsiB105
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi10G000920Silver-seed gourdcarlsiB173
Lsi10G000920Cucumber (Chinese Long) v3cuclsiB521
Lsi10G000920Watermelon (97103) v2lsiwmbB046
Lsi10G000920Watermelon (97103) v2lsiwmbB055
Lsi10G000920Wax gourdlsiwgoB064
Lsi10G000920Bottle gourd (USVL1VR-Ls)lsilsiB022
Lsi10G000920Cucumber (Gy14) v1cgylsiB499
Lsi10G000920Cucurbita maxima (Rimu)cmalsiB084
Lsi10G000920Cucurbita maxima (Rimu)cmalsiB501
Lsi10G000920Cucurbita maxima (Rimu)cmalsiB549
Lsi10G000920Cucurbita moschata (Rifu)cmolsiB493
Lsi10G000920Cucurbita moschata (Rifu)cmolsiB534
Lsi10G000920Cucurbita pepo (Zucchini)cpelsiB194
Lsi10G000920Cucurbita pepo (Zucchini)cpelsiB520
Lsi10G000920Cucurbita pepo (Zucchini)cpelsiB590
Lsi10G000920Wild cucumber (PI 183967)cpilsiB092
Lsi10G000920Cucumber (Chinese Long) v2culsiB094
Lsi10G000920Cucumber (Chinese Long) v2culsiB488
Lsi10G000920Melon (DHL92) v3.5.1lsimeB053
Lsi10G000920Watermelon (Charleston Gray)lsiwcgB058
Lsi10G000920Watermelon (Charleston Gray)lsiwcgB061
Lsi10G000920Cucumber (Gy14) v2cgyblsiB455
Lsi10G000920Melon (DHL92) v3.6.1lsimedB067