Lsi09G017020 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi09G017020
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionFra e 6.01 allergen
Locationchr09 : 25529667 .. 25530918 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCATCCACTCACAAAAGAAAGCACTATAAAAGCCAAGAAAAAAAGAAAAAACAAGAAACAAGAAACTAAAAAGAAAAATGGCCAAGAAGATGATTGCAGTGTTTTTGATGTTCATTGTGGTGGTGGCTGCTTTTCAATTTGCCAGTGCCAATGAAGAGGTGGACAAATATGAGGCCAAATTTGATGCTAAATACAAGTCTTGCTATGAAACTTGTTCGAAGGAATGCCTTCAAAAGGGCAATGGTGAAAGCTTTTGTGAAGTTAAATGTGATGAAGATTGTGATGAAAAAGAAACTGCTGGTACTTTCTCATCTTCTCTCTACATCTTTCTTCTAATATCGACCATGTTAAATTAGGGTTAAAATATCATTCTGATTCTAGTCCCTACGGCTTATTTATTCTATATCTTTTTAAAAAGTTTTTGTTAATAGTAAAATGATTTTAATTGGATAAATGGTGGACTACACAGAGATATTTTCATCCACATTTCATATTCATAAGTTTTGCATCGATATAAAAAATGCATCAACATTTCCATTCTATCGTAAATAAAAAAAAATGGACAATATATATATATATATAAATAAAAAATATTTTCAGGGTTCTTATACTTTTATGCGAATTTAAACATTTTTTTAGGAAAATTACTCTAAACTATTTACAAATATAGAAAATAGAAAAATTTTACTTACTGTATTTGCAAATTGTTATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATGTATTTTCATGAAACCTTGCTTCTAATGGAGCTTCTAATGGTTGTGTATTTGTTTTACAGATAAGCTGCACATCGAGTTGCATTGAATAATGAAAAACAAAGGAAAGAAGAGATCTTGAGGAGGGTCAAATTAGTGATTGTATTAATTAAATCAAGTTTATGAGAGGAGTTAATAAGCCTCCTTTCTCCTCCTTAATTTTTAAATTGTGATTTTGATAATTCAATTTATAATTTTCTTTTCATATAGGTGGATCATCGACCATTTTCATGGTTCTTAATTTTTTCTTTATTTGAAAACAAAAAATAATTCAAATTGCCCCAAACATTATTATTATTGTTGAGTAATAACTCTTTCCATTTGCATCTTGTTTTATTTGGGATAATGATTGTCAATTTGATCAGGTTTGAATTTGAATATGATGAGAAATGAACAAATTTGAG

mRNA sequence

CCATCCACTCACAAAAGAAAGCACTATAAAAGCCAAGAAAAAAAGAAAAAACAAGAAACAAGAAACTAAAAAGAAAAATGGCCAAGAAGATGATTGCAGTGTTTTTGATGTTCATTGTGGTGGTGGCTGCTTTTCAATTTGCCAGTGCCAATGAAGAGGTGGACAAATATGAGGCCAAATTTGATGCTAAATACAAGTCTTGCTATGAAACTTGTTCGAAGGAATGCCTTCAAAAGGGCAATGGTGAAAGCTTTTGTGAAGTTAAATGTGATGAAGATTGTGATGAAAAAGAAACTGCTGATAAGCTGCACATCGAGTTGCATTGAATAATGAAAAACAAAGGAAAGAAGAGATCTTGAGGAGGGTCAAATTAGTGATTGTATTAATTAAATCAAGTTTATGAGAGGAGTTAATAAGCCTCCTTTCTCCTCCTTAATTTTTAAATTGTGATTTTGATAATTCAATTTATAATTTTCTTTTCATATAGGTGGATCATCGACCATTTTCATGGTTCTTAATTTTTTCTTTATTTGAAAACAAAAAATAATTCAAATTGCCCCAAACATTATTATTATTGTTGAGTAATAACTCTTTCCATTTGCATCTTGTTTTATTTGGGATAATGATTGTCAATTTGATCAGGTTTGAATTTGAATATGATGAGAAATGAACAAATTTGAG

Coding sequence (CDS)

ATGGCCAAGAAGATGATTGCAGTGTTTTTGATGTTCATTGTGGTGGTGGCTGCTTTTCAATTTGCCAGTGCCAATGAAGAGGTGGACAAATATGAGGCCAAATTTGATGCTAAATACAAGTCTTGCTATGAAACTTGTTCGAAGGAATGCCTTCAAAAGGGCAATGGTGAAAGCTTTTGTGAAGTTAAATGTGATGAAGATTGTGATGAAAAAGAAACTGCTGATAAGCTGCACATCGAGTTGCATTGA

Protein sequence

MAKKMIAVFLMFIVVVAAFQFASANEEVDKYEAKFDAKYKSCYETCSKECLQKGNGESFCEVKCDEDCDEKETADKLHIELH
Homology
[Close]
BLAST of Lsi09G017020 vs. Swiss-Prot
Match: ALL6_OLEEU (Major pollen allergen Ole e 6 OS=Olea europaea GN=OLE6 PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.3e-08
Identity = 24/42 (57.14%), Postives = 32/42 (76.19%), Query Frame = 1 

Query: 36 DAKYKSCYETCSKECLQKGNGESFCEVKCDEDCDEKETADKL 78
          +A++K CY+TC KEC  KGNG +FCE+KCD DC  K+  +KL
Sbjct: 2  EAQFKECYDTCHKECSDKGNGFTFCEMKCDTDCSVKDVKEKL 43

[Close]
BLAST of Lsi09G017020 vs. TrEMBL
Match: A0A0A0KPA7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G222980 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 3.1e-28
Identity = 67/83 (80.72%), Postives = 75/83 (90.36%), Query Frame = 1 

Query: 1  MAKKMIAVFLMFIVVVAAFQFASAN-EEVDKYEAKFDAKYKSCYETCSKECLQKGNGESF 60
          MA KMIA+FLM IVVVAA QFA+AN E+V KYEAKFDAKYKSC+ETC KECL+ G+G+S+
Sbjct: 1  MANKMIALFLMCIVVVAALQFANANKEDVAKYEAKFDAKYKSCFETCEKECLRYGSGQSY 60

Query: 61 CEVKCDEDCDEKETADKLHIELH 83
          CEVKCDEDCDEKE ADKLHIELH
Sbjct: 61 CEVKCDEDCDEKEAADKLHIELH 83

[Close]
BLAST of Lsi09G017020 vs. TrEMBL
Match: A0A0A0K9Z9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106720 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 4.4e-27
Identity = 69/85 (81.18%), Postives = 71/85 (83.53%), Query Frame = 1 

Query: 1  MAKKMIAVFLMFIVVVAAFQFASANEE--VDKYEAKFDAKYKSCYETCSKECLQKG-NGE 60
          MAKKM+AVFLM IVVVA  QF  ANEE  V KYEAKFDAKYKSCYETC KECL+   NGE
Sbjct: 1  MAKKMMAVFLMCIVVVATLQFVMANEEDGVTKYEAKFDAKYKSCYETCEKECLRNDTNGE 60

Query: 61 SFCEVKCDEDCDEKETADKLHIELH 83
          SFCEVKCDEDC EKE ADKLHIELH
Sbjct: 61 SFCEVKCDEDCSEKEAADKLHIELH 85

[Close]
BLAST of Lsi09G017020 vs. TrEMBL
Match: A0A0A0KDP7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G102490 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 8.6e-23
Identity = 57/81 (70.37%), Postives = 68/81 (83.95%), Query Frame = 1 

Query: 1  MAKKMIAVFLMFIVVVAAFQFASANEE--VDKYEAKFDAKYKSCYETCSKECLQKGNGES 60
          MAKKM+AVFLM IVVV + QFA+AN+E  V  YEAKFDAKYK+C+ TC KEC+++G+G S
Sbjct: 1  MAKKMMAVFLMCIVVVTSLQFATANKEYEVASYEAKFDAKYKACFVTCEKECIERGSGHS 60

Query: 61 FCEVKCDEDCDEKETADKLHI 80
          +CEVKCDEDC  KE ADKLHI
Sbjct: 61 YCEVKCDEDCGAKEAADKLHI 81

[Close]
BLAST of Lsi09G017020 vs. TrEMBL
Match: A0A0A0KFH6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G102480 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 5.6e-22
Identity = 55/85 (64.71%), Postives = 70/85 (82.35%), Query Frame = 1 

Query: 1  MAKKMIAVFLMFIVVVAAFQFASAN--EEVDKYEAKFDAKYKSCYETCSKECLQKG-NGE 60
          MAKKM+ V L+ IV++A  +F+  N  E+ DKYE+KFDA+YKSCYE+C KECL  G NG+
Sbjct: 1  MAKKMMGVLLICIVIMAVLEFSIVNGEEKEDKYESKFDARYKSCYESCEKECLTNGKNGQ 60

Query: 61 SFCEVKCDEDCDEKETADKLHIELH 83
          S+CEVKCDEDCDEKE ADKLH+E++
Sbjct: 61 SYCEVKCDEDCDEKEVADKLHVEVN 85

[Close]
BLAST of Lsi09G017020 vs. TrEMBL
Match: A0A0A0KCI6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106710 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 4.7e-21
Identity = 55/80 (68.75%), Postives = 67/80 (83.75%), Query Frame = 1 

Query: 3  KKMIAVFLMFIVVVAAFQFASAN--EEVDKYEAKFDAKYKSCYETCSKECLQKG-NGESF 62
          KKM+ V L+ IVV+AA +F+  N  E+ DKYE+KFDAKYK+CYE+C KECL+ G NG+SF
Sbjct: 4  KKMMGVLLICIVVMAALEFSIVNGEEKEDKYESKFDAKYKTCYESCEKECLENGNNGQSF 63

Query: 63 CEVKCDEDCDEKETADKLHI 80
          CEVKCDEDC EKE+ADKLHI
Sbjct: 64 CEVKCDEDCGEKESADKLHI 83

[Close]
BLAST of Lsi09G017020 vs. NCBI nr
Match: gi|659114221|ref|XP_008456958.1| (PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo])

HSP 1 Score: 132.5 bits (332), Expect = 3.4e-28
Identity = 67/84 (79.76%), Postives = 76/84 (90.48%), Query Frame = 1 

Query: 1  MAKKMIAVFLMFIVVVAAFQFASAN--EEVDKYEAKFDAKYKSCYETCSKECLQKGNGES 60
          MAKKMIA+FLM IVVVAA QFASAN  +EV KYEAKFDAKYKSC++TC KECL+ G+G+S
Sbjct: 1  MAKKMIALFLMCIVVVAALQFASANKEDEVAKYEAKFDAKYKSCFKTCEKECLENGSGQS 60

Query: 61 FCEVKCDEDCDEKETADKLHIELH 83
          +CEVKCDEDC+EKE ADKLHIELH
Sbjct: 61 YCEVKCDEDCNEKEVADKLHIELH 84

[Close]
BLAST of Lsi09G017020 vs. NCBI nr
Match: gi|449457470|ref|XP_004146471.1| (PREDICTED: major pollen allergen Ole e 6-like [Cucumis sativus])

HSP 1 Score: 132.1 bits (331), Expect = 4.4e-28
Identity = 67/83 (80.72%), Postives = 75/83 (90.36%), Query Frame = 1 

Query: 1  MAKKMIAVFLMFIVVVAAFQFASAN-EEVDKYEAKFDAKYKSCYETCSKECLQKGNGESF 60
          MA KMIA+FLM IVVVAA QFA+AN E+V KYEAKFDAKYKSC+ETC KECL+ G+G+S+
Sbjct: 1  MANKMIALFLMCIVVVAALQFANANKEDVAKYEAKFDAKYKSCFETCEKECLRYGSGQSY 60

Query: 61 CEVKCDEDCDEKETADKLHIELH 83
          CEVKCDEDCDEKE ADKLHIELH
Sbjct: 61 CEVKCDEDCDEKEAADKLHIELH 83

[Close]
BLAST of Lsi09G017020 vs. NCBI nr
Match: gi|700191316|gb|KGN46520.1| (hypothetical protein Csa_6G106720 [Cucumis sativus])

HSP 1 Score: 128.3 bits (321), Expect = 6.3e-27
Identity = 69/85 (81.18%), Postives = 71/85 (83.53%), Query Frame = 1 

Query: 1  MAKKMIAVFLMFIVVVAAFQFASANEE--VDKYEAKFDAKYKSCYETCSKECLQKG-NGE 60
          MAKKM+AVFLM IVVVA  QF  ANEE  V KYEAKFDAKYKSCYETC KECL+   NGE
Sbjct: 1  MAKKMMAVFLMCIVVVATLQFVMANEEDGVTKYEAKFDAKYKSCYETCEKECLRNDTNGE 60

Query: 61 SFCEVKCDEDCDEKETADKLHIELH 83
          SFCEVKCDEDC EKE ADKLHIELH
Sbjct: 61 SFCEVKCDEDCSEKEAADKLHIELH 85

[Close]
BLAST of Lsi09G017020 vs. NCBI nr
Match: gi|449445523|ref|XP_004140522.1| (PREDICTED: major pollen allergen Ole e 6-like [Cucumis sativus])

HSP 1 Score: 114.0 bits (284), Expect = 1.2e-22
Identity = 57/81 (70.37%), Postives = 68/81 (83.95%), Query Frame = 1 

Query: 1  MAKKMIAVFLMFIVVVAAFQFASANEE--VDKYEAKFDAKYKSCYETCSKECLQKGNGES 60
          MAKKM+AVFLM IVVV + QFA+AN+E  V  YEAKFDAKYK+C+ TC KEC+++G+G S
Sbjct: 1  MAKKMMAVFLMCIVVVTSLQFATANKEYEVASYEAKFDAKYKACFVTCEKECIERGSGHS 60

Query: 61 FCEVKCDEDCDEKETADKLHI 80
          +CEVKCDEDC  KE ADKLHI
Sbjct: 61 YCEVKCDEDCGAKEAADKLHI 81

[Close]
BLAST of Lsi09G017020 vs. NCBI nr
Match: gi|659119712|ref|XP_008459802.1| (PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo])

HSP 1 Score: 111.7 bits (278), Expect = 6.1e-22
Identity = 58/84 (69.05%), Postives = 67/84 (79.76%), Query Frame = 1 

Query: 1  MAKKMIAVFLMFIVVVAAFQFASAN--EEVDKYEAKFDAKYKSCYETCSKECLQKGNGES 60
          MAKKM+AVFLM IVVVA  QFA+AN  +EV  YEAKFDAKYK+C+  C KEC+++G G S
Sbjct: 1  MAKKMMAVFLMCIVVVATLQFATANKEDEVANYEAKFDAKYKACFVICEKECVERGGGHS 60

Query: 61 FCEVKCDEDCDEKETADKLHIELH 83
          +CEVKCDEDC  KE ADKL I LH
Sbjct: 61 YCEVKCDEDCGAKEAADKLGIILH 84

The following BLAST results are available for this feature:
BLAST of Lsi09G017020 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ALL6_OLEEU1.3e-0857.14Major pollen allergen Ole e 6 OS=Olea europaea GN=OLE6 PE=1 SV=1[more]
BLAST of Lsi09G017020 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KPA7_CUCSA3.1e-2880.72Uncharacterized protein OS=Cucumis sativus GN=Csa_5G222980 PE=4 SV=1[more]
A0A0A0K9Z9_CUCSA4.4e-2781.18Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106720 PE=4 SV=1[more]
A0A0A0KDP7_CUCSA8.6e-2370.37Uncharacterized protein OS=Cucumis sativus GN=Csa_6G102490 PE=4 SV=1[more]
A0A0A0KFH6_CUCSA5.6e-2264.71Uncharacterized protein OS=Cucumis sativus GN=Csa_6G102480 PE=4 SV=1[more]
A0A0A0KCI6_CUCSA4.7e-2168.75Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106710 PE=4 SV=1[more]
BLAST of Lsi09G017020 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi09G017020 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659114221|ref|XP_008456958.1|3.4e-2879.76PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo][more]
gi|449457470|ref|XP_004146471.1|4.4e-2880.72PREDICTED: major pollen allergen Ole e 6-like [Cucumis sativus][more]
gi|700191316|gb|KGN46520.1|6.3e-2781.18hypothetical protein Csa_6G106720 [Cucumis sativus][more]
gi|449445523|ref|XP_004140522.1|1.2e-2270.37PREDICTED: major pollen allergen Ole e 6-like [Cucumis sativus][more]
gi|659119712|ref|XP_008459802.1|6.1e-2269.05PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR015333Pollen_allergen_ole-e-6
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi09G017020.1Lsi09G017020.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015333Pollen allergen ole e 6GENE3DG3DSA:1.10.287.720coord: 37..79
score: 7.2
IPR015333Pollen allergen ole e 6PFAMPF09253Ole-e-6coord: 42..78
score: 1.7
IPR015333Pollen allergen ole e 6unknownSSF111388Pollen allergen ole e 6coord: 36..77
score: 6.28
NoneNo IPR availablePANTHERPTHR35632FAMILY NOT NAMEDcoord: 1..79
score: 1.8

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi09G017020Cucumber (Gy14) v1cgylsiB562
Lsi09G017020Cucurbita maxima (Rimu)cmalsiB331
Lsi09G017020Cucurbita maxima (Rimu)cmalsiB814
Lsi09G017020Cucurbita moschata (Rifu)cmolsiB320
Lsi09G017020Cucurbita moschata (Rifu)cmolsiB800
Lsi09G017020Cucurbita pepo (Zucchini)cpelsiB101
Lsi09G017020Cucurbita pepo (Zucchini)cpelsiB251
Lsi09G017020Wild cucumber (PI 183967)cpilsiB404
Lsi09G017020Cucumber (Chinese Long) v2culsiB402
Lsi09G017020Melon (DHL92) v3.5.1lsimeB017
Lsi09G017020Watermelon (Charleston Gray)lsiwcgB029
Lsi09G017020Watermelon (97103) v1lsiwmB036
Lsi09G017020Cucumber (Gy14) v2cgyblsiB366
Lsi09G017020Melon (DHL92) v3.6.1lsimedB019
Lsi09G017020Silver-seed gourdcarlsiB070
Lsi09G017020Silver-seed gourdcarlsiB883
Lsi09G017020Cucumber (Chinese Long) v3cuclsiB424
Lsi09G017020Watermelon (97103) v2lsiwmbB026
Lsi09G017020Wax gourdlsiwgoB011