Lsi09G017020 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi09G017020
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Fra e 6.01 allergen
Location	chr09 : 25529667 .. 25530918 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCATCCACTCACAAAAGAAAGCACTATAAAAGCCAAGAAAAAAAGAAAAAACAAGAAACAAGAAACTAAAAAGAAAAATGGCCAAGAAGATGATTGCAGTGTTTTTGATGTTCATTGTGGTGGTGGCTGCTTTTCAATTTGCCAGTGCCAATGAAGAGGTGGACAAATATGAGGCCAAATTTGATGCTAAATACAAGTCTTGCTATGAAACTTGTTCGAAGGAATGCCTTCAAAAGGGCAATGGTGAAAGCTTTTGTGAAGTTAAATGTGATGAAGATTGTGATGAAAAAGAAACTGCTGGTACTTTCTCATCTTCTCTCTACATCTTTCTTCTAATATCGACCATGTTAAATTAGGGTTAAAATATCATTCTGATTCTAGTCCCTACGGCTTATTTATTCTATATCTTTTTAAAAAGTTTTTGTTAATAGTAAAATGATTTTAATTGGATAAATGGTGGACTACACAGAGATATTTTCATCCACATTTCATATTCATAAGTTTTGCATCGATATAAAAAATGCATCAACATTTCCATTCTATCGTAAATAAAAAAAAATGGACAATATATATATATATATAAATAAAAAATATTTTCAGGGTTCTTATACTTTTATGCGAATTTAAACATTTTTTTAGGAAAATTACTCTAAACTATTTACAAATATAGAAAATAGAAAAATTTTACTTACTGTATTTGCAAATTGTTATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATGTATTTTCATGAAACCTTGCTTCTAATGGAGCTTCTAATGGTTGTGTATTTGTTTTACAGATAAGCTGCACATCGAGTTGCATTGAATAATGAAAAACAAAGGAAAGAAGAGATCTTGAGGAGGGTCAAATTAGTGATTGTATTAATTAAATCAAGTTTATGAGAGGAGTTAATAAGCCTCCTTTCTCCTCCTTAATTTTTAAATTGTGATTTTGATAATTCAATTTATAATTTTCTTTTCATATAGGTGGATCATCGACCATTTTCATGGTTCTTAATTTTTTCTTTATTTGAAAACAAAAAATAATTCAAATTGCCCCAAACATTATTATTATTGTTGAGTAATAACTCTTTCCATTTGCATCTTGTTTTATTTGGGATAATGATTGTCAATTTGATCAGGTTTGAATTTGAATATGATGAGAAATGAACAAATTTGAG

mRNA sequence

CCATCCACTCACAAAAGAAAGCACTATAAAAGCCAAGAAAAAAAGAAAAAACAAGAAACAAGAAACTAAAAAGAAAAATGGCCAAGAAGATGATTGCAGTGTTTTTGATGTTCATTGTGGTGGTGGCTGCTTTTCAATTTGCCAGTGCCAATGAAGAGGTGGACAAATATGAGGCCAAATTTGATGCTAAATACAAGTCTTGCTATGAAACTTGTTCGAAGGAATGCCTTCAAAAGGGCAATGGTGAAAGCTTTTGTGAAGTTAAATGTGATGAAGATTGTGATGAAAAAGAAACTGCTGATAAGCTGCACATCGAGTTGCATTGAATAATGAAAAACAAAGGAAAGAAGAGATCTTGAGGAGGGTCAAATTAGTGATTGTATTAATTAAATCAAGTTTATGAGAGGAGTTAATAAGCCTCCTTTCTCCTCCTTAATTTTTAAATTGTGATTTTGATAATTCAATTTATAATTTTCTTTTCATATAGGTGGATCATCGACCATTTTCATGGTTCTTAATTTTTTCTTTATTTGAAAACAAAAAATAATTCAAATTGCCCCAAACATTATTATTATTGTTGAGTAATAACTCTTTCCATTTGCATCTTGTTTTATTTGGGATAATGATTGTCAATTTGATCAGGTTTGAATTTGAATATGATGAGAAATGAACAAATTTGAG

Coding sequence (CDS)

ATGGCCAAGAAGATGATTGCAGTGTTTTTGATGTTCATTGTGGTGGTGGCTGCTTTTCAATTTGCCAGTGCCAATGAAGAGGTGGACAAATATGAGGCCAAATTTGATGCTAAATACAAGTCTTGCTATGAAACTTGTTCGAAGGAATGCCTTCAAAAGGGCAATGGTGAAAGCTTTTGTGAAGTTAAATGTGATGAAGATTGTGATGAAAAAGAAACTGCTGATAAGCTGCACATCGAGTTGCATTGA

Protein sequence

MAKKMIAVFLMFIVVVAAFQFASANEEVDKYEAKFDAKYKSCYETCSKECLQKGNGESFCEVKCDEDCDEKETADKLHIELH

Homology

[Close]

BLAST of Lsi09G017020 vs. Swiss-Prot
Match: ALL6_OLEEU (Major pollen allergen Ole e 6 OS=Olea europaea GN=OLE6 PE=1 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.3e-08
Identity = 24/42 (57.14%), Postives = 32/42 (76.19%), Query Frame = 1


Query: 36 DAKYKSCYETCSKECLQKGNGESFCEVKCDEDCDEKETADKL 78
          +A++K CY+TC KEC  KGNG +FCE+KCD DC  K+  +KL
Sbjct: 2  EAQFKECYDTCHKECSDKGNGFTFCEMKCDTDCSVKDVKEKL 43

[Close]

BLAST of Lsi09G017020 vs. TrEMBL
Match: A0A0A0KPA7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G222980 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 3.1e-28
Identity = 67/83 (80.72%), Postives = 75/83 (90.36%), Query Frame = 1


Query: 1  MAKKMIAVFLMFIVVVAAFQFASAN-EEVDKYEAKFDAKYKSCYETCSKECLQKGNGESF 60
          MA KMIA+FLM IVVVAA QFA+AN E+V KYEAKFDAKYKSC+ETC KECL+ G+G+S+
Sbjct: 1  MANKMIALFLMCIVVVAALQFANANKEDVAKYEAKFDAKYKSCFETCEKECLRYGSGQSY 60

Query: 61 CEVKCDEDCDEKETADKLHIELH 83
          CEVKCDEDCDEKE ADKLHIELH
Sbjct: 61 CEVKCDEDCDEKEAADKLHIELH 83

[Close]

BLAST of Lsi09G017020 vs. TrEMBL
Match: A0A0A0K9Z9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106720 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 4.4e-27
Identity = 69/85 (81.18%), Postives = 71/85 (83.53%), Query Frame = 1


Query: 1  MAKKMIAVFLMFIVVVAAFQFASANEE--VDKYEAKFDAKYKSCYETCSKECLQKG-NGE 60
          MAKKM+AVFLM IVVVA  QF  ANEE  V KYEAKFDAKYKSCYETC KECL+   NGE
Sbjct: 1  MAKKMMAVFLMCIVVVATLQFVMANEEDGVTKYEAKFDAKYKSCYETCEKECLRNDTNGE 60

Query: 61 SFCEVKCDEDCDEKETADKLHIELH 83
          SFCEVKCDEDC EKE ADKLHIELH
Sbjct: 61 SFCEVKCDEDCSEKEAADKLHIELH 85

[Close]

BLAST of Lsi09G017020 vs. TrEMBL
Match: A0A0A0KDP7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G102490 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 8.6e-23
Identity = 57/81 (70.37%), Postives = 68/81 (83.95%), Query Frame = 1


Query: 1  MAKKMIAVFLMFIVVVAAFQFASANEE--VDKYEAKFDAKYKSCYETCSKECLQKGNGES 60
          MAKKM+AVFLM IVVV + QFA+AN+E  V  YEAKFDAKYK+C+ TC KEC+++G+G S
Sbjct: 1  MAKKMMAVFLMCIVVVTSLQFATANKEYEVASYEAKFDAKYKACFVTCEKECIERGSGHS 60

Query: 61 FCEVKCDEDCDEKETADKLHI 80
          +CEVKCDEDC  KE ADKLHI
Sbjct: 61 YCEVKCDEDCGAKEAADKLHI 81

[Close]

BLAST of Lsi09G017020 vs. TrEMBL
Match: A0A0A0KFH6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G102480 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 5.6e-22
Identity = 55/85 (64.71%), Postives = 70/85 (82.35%), Query Frame = 1


Query: 1  MAKKMIAVFLMFIVVVAAFQFASAN--EEVDKYEAKFDAKYKSCYETCSKECLQKG-NGE 60
          MAKKM+ V L+ IV++A  +F+  N  E+ DKYE+KFDA+YKSCYE+C KECL  G NG+
Sbjct: 1  MAKKMMGVLLICIVIMAVLEFSIVNGEEKEDKYESKFDARYKSCYESCEKECLTNGKNGQ 60

Query: 61 SFCEVKCDEDCDEKETADKLHIELH 83
          S+CEVKCDEDCDEKE ADKLH+E++
Sbjct: 61 SYCEVKCDEDCDEKEVADKLHVEVN 85

[Close]

BLAST of Lsi09G017020 vs. TrEMBL
Match: A0A0A0KCI6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106710 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 4.7e-21
Identity = 55/80 (68.75%), Postives = 67/80 (83.75%), Query Frame = 1


Query: 3  KKMIAVFLMFIVVVAAFQFASAN--EEVDKYEAKFDAKYKSCYETCSKECLQKG-NGESF 62
          KKM+ V L+ IVV+AA +F+  N  E+ DKYE+KFDAKYK+CYE+C KECL+ G NG+SF
Sbjct: 4  KKMMGVLLICIVVMAALEFSIVNGEEKEDKYESKFDAKYKTCYESCEKECLENGNNGQSF 63

Query: 63 CEVKCDEDCDEKETADKLHI 80
          CEVKCDEDC EKE+ADKLHI
Sbjct: 64 CEVKCDEDCGEKESADKLHI 83

[Close]

BLAST of Lsi09G017020 vs. NCBI nr
Match: gi|659114221|ref|XP_008456958.1| (PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo])

HSP 1 Score: 132.5 bits (332), Expect = 3.4e-28
Identity = 67/84 (79.76%), Postives = 76/84 (90.48%), Query Frame = 1


Query: 1  MAKKMIAVFLMFIVVVAAFQFASAN--EEVDKYEAKFDAKYKSCYETCSKECLQKGNGES 60
          MAKKMIA+FLM IVVVAA QFASAN  +EV KYEAKFDAKYKSC++TC KECL+ G+G+S
Sbjct: 1  MAKKMIALFLMCIVVVAALQFASANKEDEVAKYEAKFDAKYKSCFKTCEKECLENGSGQS 60

Query: 61 FCEVKCDEDCDEKETADKLHIELH 83
          +CEVKCDEDC+EKE ADKLHIELH
Sbjct: 61 YCEVKCDEDCNEKEVADKLHIELH 84

[Close]

BLAST of Lsi09G017020 vs. NCBI nr
Match: gi|449457470|ref|XP_004146471.1| (PREDICTED: major pollen allergen Ole e 6-like [Cucumis sativus])

HSP 1 Score: 132.1 bits (331), Expect = 4.4e-28
Identity = 67/83 (80.72%), Postives = 75/83 (90.36%), Query Frame = 1


Query: 1  MAKKMIAVFLMFIVVVAAFQFASAN-EEVDKYEAKFDAKYKSCYETCSKECLQKGNGESF 60
          MA KMIA+FLM IVVVAA QFA+AN E+V KYEAKFDAKYKSC+ETC KECL+ G+G+S+
Sbjct: 1  MANKMIALFLMCIVVVAALQFANANKEDVAKYEAKFDAKYKSCFETCEKECLRYGSGQSY 60

Query: 61 CEVKCDEDCDEKETADKLHIELH 83
          CEVKCDEDCDEKE ADKLHIELH
Sbjct: 61 CEVKCDEDCDEKEAADKLHIELH 83

[Close]

BLAST of Lsi09G017020 vs. NCBI nr
Match: gi|700191316|gb|KGN46520.1| (hypothetical protein Csa_6G106720 [Cucumis sativus])

HSP 1 Score: 128.3 bits (321), Expect = 6.3e-27
Identity = 69/85 (81.18%), Postives = 71/85 (83.53%), Query Frame = 1


Query: 1  MAKKMIAVFLMFIVVVAAFQFASANEE--VDKYEAKFDAKYKSCYETCSKECLQKG-NGE 60
          MAKKM+AVFLM IVVVA  QF  ANEE  V KYEAKFDAKYKSCYETC KECL+   NGE
Sbjct: 1  MAKKMMAVFLMCIVVVATLQFVMANEEDGVTKYEAKFDAKYKSCYETCEKECLRNDTNGE 60

Query: 61 SFCEVKCDEDCDEKETADKLHIELH 83
          SFCEVKCDEDC EKE ADKLHIELH
Sbjct: 61 SFCEVKCDEDCSEKEAADKLHIELH 85

[Close]

BLAST of Lsi09G017020 vs. NCBI nr
Match: gi|449445523|ref|XP_004140522.1| (PREDICTED: major pollen allergen Ole e 6-like [Cucumis sativus])

HSP 1 Score: 114.0 bits (284), Expect = 1.2e-22
Identity = 57/81 (70.37%), Postives = 68/81 (83.95%), Query Frame = 1


Query: 1  MAKKMIAVFLMFIVVVAAFQFASANEE--VDKYEAKFDAKYKSCYETCSKECLQKGNGES 60
          MAKKM+AVFLM IVVV + QFA+AN+E  V  YEAKFDAKYK+C+ TC KEC+++G+G S
Sbjct: 1  MAKKMMAVFLMCIVVVTSLQFATANKEYEVASYEAKFDAKYKACFVTCEKECIERGSGHS 60

Query: 61 FCEVKCDEDCDEKETADKLHI 80
          +CEVKCDEDC  KE ADKLHI
Sbjct: 61 YCEVKCDEDCGAKEAADKLHI 81

[Close]

BLAST of Lsi09G017020 vs. NCBI nr
Match: gi|659119712|ref|XP_008459802.1| (PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo])

HSP 1 Score: 111.7 bits (278), Expect = 6.1e-22
Identity = 58/84 (69.05%), Postives = 67/84 (79.76%), Query Frame = 1


Query: 1  MAKKMIAVFLMFIVVVAAFQFASAN--EEVDKYEAKFDAKYKSCYETCSKECLQKGNGES 60
          MAKKM+AVFLM IVVVA  QFA+AN  +EV  YEAKFDAKYK+C+  C KEC+++G G S
Sbjct: 1  MAKKMMAVFLMCIVVVATLQFATANKEDEVANYEAKFDAKYKACFVICEKECVERGGGHS 60

Query: 61 FCEVKCDEDCDEKETADKLHIELH 83
          +CEVKCDEDC  KE ADKL I LH
Sbjct: 61 YCEVKCDEDCGAKEAADKLGIILH 84

The following BLAST results are available for this feature:

BLAST of Lsi09G017020 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ALL6_OLEEU	1.3e-08	57.14	Major pollen allergen Ole e 6 OS=Olea europaea GN=OLE6 PE=1 SV=1	[more]

BLAST of Lsi09G017020 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPA7_CUCSA	3.1e-28	80.72	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G222980 PE=4 SV=1	[more]
A0A0A0K9Z9_CUCSA	4.4e-27	81.18	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106720 PE=4 SV=1	[more]
A0A0A0KDP7_CUCSA	8.6e-23	70.37	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G102490 PE=4 SV=1	[more]
A0A0A0KFH6_CUCSA	5.6e-22	64.71	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G102480 PE=4 SV=1	[more]
A0A0A0KCI6_CUCSA	4.7e-21	68.75	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106710 PE=4 SV=1	[more]

BLAST of Lsi09G017020 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi09G017020 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659114221\|ref\|XP_008456958.1\|	3.4e-28	79.76	PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo]	[more]
gi\|449457470\|ref\|XP_004146471.1\|	4.4e-28	80.72	PREDICTED: major pollen allergen Ole e 6-like [Cucumis sativus]	[more]
gi\|700191316\|gb\|KGN46520.1\|	6.3e-27	81.18	hypothetical protein Csa_6G106720 [Cucumis sativus]	[more]
gi\|449445523\|ref\|XP_004140522.1\|	1.2e-22	70.37	PREDICTED: major pollen allergen Ole e 6-like [Cucumis sativus]	[more]
gi\|659119712\|ref\|XP_008459802.1\|	6.1e-22	69.05	PREDICTED: major pollen allergen Ole e 6-like [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR015333	Pollen_allergen_ole-e-6

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G017020.1	Lsi09G017020.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015333	Pollen allergen ole e 6	GENE3D	G3DSA:1.10.287.720		coord: 37..79 score: 7.2
IPR015333	Pollen allergen ole e 6	PFAM	PF09253	Ole-e-6	coord: 42..78 score: 1.7
IPR015333	Pollen allergen ole e 6	unknown	SSF111388	Pollen allergen ole e 6	coord: 36..77 score: 6.28
None	No IPR available	PANTHER	PTHR35632	FAMILY NOT NAMED	coord: 1..79 score: 1.8

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi09G017020	Cucurbita pepo (Zucchini)	cpelsiB251
Lsi09G017020	Wild cucumber (PI 183967)	cpilsiB404
Lsi09G017020	Cucumber (Chinese Long) v2	culsiB402
Lsi09G017020	Melon (DHL92) v3.5.1	lsimeB017
Lsi09G017020	Watermelon (Charleston Gray)	lsiwcgB029
Lsi09G017020	Watermelon (97103) v1	lsiwmB036
Lsi09G017020	Cucumber (Gy14) v2	cgyblsiB366
Lsi09G017020	Melon (DHL92) v3.6.1	lsimedB019
Lsi09G017020	Silver-seed gourd	carlsiB070
Lsi09G017020	Silver-seed gourd	carlsiB883
Lsi09G017020	Cucumber (Chinese Long) v3	cuclsiB424
Lsi09G017020	Watermelon (97103) v2	lsiwmbB026
Lsi09G017020	Wax gourd	lsiwgoB011
Lsi09G017020	Cucumber (Gy14) v1	cgylsiB562
Lsi09G017020	Cucurbita maxima (Rimu)	cmalsiB331
Lsi09G017020	Cucurbita maxima (Rimu)	cmalsiB814
Lsi09G017020	Cucurbita moschata (Rifu)	cmolsiB320
Lsi09G017020	Cucurbita moschata (Rifu)	cmolsiB800
Lsi09G017020	Cucurbita pepo (Zucchini)	cpelsiB101