Lsi09G016930 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi09G016930
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Nuclear RNA binding protein
Location	chr09 : 25420053 .. 25421244 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAGTGTGACCTCTTACTTTTCAGGCATAAAGTAGTGAGTTTTCTACTTTAGATAATGTGCAAGTTGTTTGTTTTAGCGACAAATTAATGTTTGTCTTTTCGGCACTCATCCCACTAAACGCAAACCCATCACCAGCCACTAGTACCACTAAAAATTTTCTGTGAAGTCAATTAATGCAGTAAGGCATATGCCTTCCACGTTGCAATAATGTAAGCATGGAGGAGCGTGCCTCTCGTTCAACATAGGTATAGGCCACTTCTTCTGTTCCGACGTAGTCTAAATCTCGCAATTTTATTTCCCCGAGCCTTATATTTTGAAAACGTTGATGTCCTGCCAGCACATAGGATGCTCTTTTTGGGCTTATTCTGAACCTACCTAAAGAAATTTAATAGAATTACTCTTTCTTTAAGAATATTATATCACATGTGGTTGAAATTTCCCTTGATGACCTATTAGAGTTGGTAGAGGTGACTTACTTGGTGAGCCTATGCTCAGGTTGACCGGAAAAATTTGAATACGATAATATTTTTCATTATTTAGAACCATTATTAGAGGAAAATAAGTTTCTTATAAAATTGTGCTTTGAAGAATTTCATTTGGCCTTTATCTTCCAATGTTCTTCATCTTCATAAAAAATGCTAACCTTAAATTGCAATGAAATCATTCTTCAAGTTGATTACACTAGATTTCTAAAGAATGGATTTAATTCGTTAAAAGTACTATTTATTCCAGATGATAGAATTTGCTTCCAAATACAGTTTTTTATAAAGTTATGGTTCTAACTTTTAATTTTGCCCATCAGAATGAAGGAGCTCTATTTTTCTTGCCCTACAACATTGTTTTAGCCCTTCATAACATTGAAATGTTTTCTGTACGTTGGTGGAATATAATTTTGATTAACGGGTCTATGCAAATTAGGCATTTGGTTTTCAAAAATTCCTGAAATTTTGAAAATAGACCTTGTAAAAGGTTAAATGACTGATGTTTTTTTTCCCACTTGTTGTTAGTCTTTGAGTATTAATGAGTTTTTGAGGCCTGCGGAAGGAGAGCGACACTATGCCCCTGGTGGCCGAGGAAGGGGTCGTGGCCGTGGTTCAAGGGGAGGATACAGTGGCAGCTCGATAAGCAATGTTGCAGCCCCATCCATTGAAGACCCTGGGCAGTTCCCGACCTTAGGTGCGAAGTGA

mRNA sequence

ATGGCTAGTTCTTTGAGTATTAATGAGTTTTTGAGGCCTGCGGAAGGAGAGCGACACTATGCCCCTGGTGGCCGAGGAAGGGGTCGTGGCCGTGGTTCAAGGGGAGGATACAGTGGCAGCTCGATAAGCAATGTTGCAGCCCCATCCATTGAAGACCCTGGGCAGTTCCCGACCTTAGGTGCGAAGTGA

Coding sequence (CDS)

ATGGCTAGTTCTTTGAGTATTAATGAGTTTTTGAGGCCTGCGGAAGGAGAGCGACACTATGCCCCTGGTGGCCGAGGAAGGGGTCGTGGCCGTGGTTCAAGGGGAGGATACAGTGGCAGCTCGATAAGCAATGTTGCAGCCCCATCCATTGAAGACCCTGGGCAGTTCCCGACCTTAGGTGCGAAGTGA

Protein sequence

MASSLSINEFLRPAEGERHYAPGGRGRGRGRGSRGGYSGSSISNVAAPSIEDPGQFPTLGAK

Homology

[Close]

BLAST of Lsi09G016930 vs. TrEMBL
Match: A0A0A0K9Z4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106180 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 4.2e-22
Identity = 55/59 (93.22%), Postives = 57/59 (96.61%), Query Frame = 1


Query: 4   SLSINEFLRPAEGERHYAPGGRGRGRGRGSRGGYSGSSISNVAAPSIEDPGQFPTLGAK 63
           SLSINEFLRPA+GERHYAPGGRGRGRGRGSRGGYSGS +SNVAAPSI DPGQFPTLGAK
Sbjct: 303 SLSINEFLRPADGERHYAPGGRGRGRGRGSRGGYSGSPMSNVAAPSIGDPGQFPTLGAK 361

[Close]

BLAST of Lsi09G016930 vs. TrEMBL
Match: D7SLZ5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0021g01420 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 7.5e-19
Identity = 50/60 (83.33%), Postives = 57/60 (95.00%), Query Frame = 1


Query: 4   SLSINEFLRPAEGERHYAPGGRGRGRGRGSRGGY-SGSSISNVAAPSIEDPGQFPTLGAK 63
           ++SINEFL+PAEGER Y+PGGRGRGRGRGSRGGY  G+++SNVAAPSIEDPGQFPTLGAK
Sbjct: 302 AVSINEFLKPAEGERFYSPGGRGRGRGRGSRGGYGGGNAMSNVAAPSIEDPGQFPTLGAK 361

[Close]

BLAST of Lsi09G016930 vs. TrEMBL
Match: A0A0A0KCI2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G105680 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 7.5e-19
Identity = 53/61 (86.89%), Postives = 57/61 (93.44%), Query Frame = 1


Query: 4   SLSINEFLRPAEGERHYAPGGRGRGRGRGSR-GGYSGSSI-SNVAAPSIEDPGQFPTLGA 63
           S+SINEFL+PAEGE+HY PGGRGRGRGRGSR GGY GSS+ SNVAAPSIEDPGQFPTLGA
Sbjct: 300 SVSINEFLKPAEGEKHYTPGGRGRGRGRGSRGGGYVGSSMSSNVAAPSIEDPGQFPTLGA 359

[Close]

BLAST of Lsi09G016930 vs. TrEMBL
Match: W9RPW5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_024026 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.7e-18
Identity = 51/58 (87.93%), Postives = 53/58 (91.38%), Query Frame = 1


Query: 4   SLSINEFLRPAEGERHYAPGGRGRGRGRGSRGGYSGS-SISNVAAPSIEDPGQFPTLG 61
           SLSINEFL+PAEGER+Y PGGRGRGRGRGSRGGY G  S SNVAAPSIEDPGQFPTLG
Sbjct: 332 SLSINEFLKPAEGERYYTPGGRGRGRGRGSRGGYGGGYSSSNVAAPSIEDPGQFPTLG 389

[Close]

BLAST of Lsi09G016930 vs. TrEMBL
Match: A0A151RAW5_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_038893 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.7e-18
Identity = 48/59 (81.36%), Postives = 55/59 (93.22%), Query Frame = 1


Query: 4   SLSINEFLRPAEGERHYAPGGRGRGRGRGSRGGYSGSSISNVAAPSIEDPGQFPTLGAK 63
           S++I+EFL+PAEGER+Y PGGRGRGRGRGSRGGYSG++ SNV APSIEDPGQFPTLG K
Sbjct: 313 SVNIHEFLKPAEGERYYNPGGRGRGRGRGSRGGYSGNAGSNVPAPSIEDPGQFPTLGGK 371

[Close]

BLAST of Lsi09G016930 vs. TAIR10
Match: AT4G16830.1 (AT4G16830.1 Hyaluronan / mRNA binding family)

HSP 1 Score: 57.0 bits (136), Expect = 4.8e-09
Identity = 33/62 (53.23%), Postives = 39/62 (62.90%), Query Frame = 1


Query: 4   SLSINEFLRPAEGERHYAPGGRGRGRGRGSRGGYS---GSSISNVAAPSIEDPGQFPTLG 63
           ++SINEFL+PAEG  +Y  G  GRGRG   RGG S        N AAP+I D  QFP+LG
Sbjct: 294 AVSINEFLKPAEGGNYYRGGRGGRGRGGRGRGGVSSGESGGYRNEAAPAIGDAAQFPSLG 353

[Close]

BLAST of Lsi09G016930 vs. TAIR10
Match: AT5G47210.1 (AT5G47210.1 Hyaluronan / mRNA binding family)

HSP 1 Score: 53.5 bits (127), Expect = 5.3e-08
Identity = 33/59 (55.93%), Postives = 40/59 (67.80%), Query Frame = 1


Query: 4   SLSINEFLRPAEGERHYAPGGRGRGR-GRGSRG-GYSGSSISNVAAPSIEDPGQFPTLG 61
           SLSINEFL+PA+G+R+   GG  RGR GRG RG G +       AAP+I D  QFP+LG
Sbjct: 299 SLSINEFLKPADGKRYNGRGGGSRGRGGRGGRGEGGNQRYAKEAAAPAIGDTAQFPSLG 357

[Close]

BLAST of Lsi09G016930 vs. NCBI nr
Match: gi|659119706|ref|XP_008459799.1| (PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein-like [Cucumis melo])

HSP 1 Score: 113.2 bits (282), Expect = 1.6e-22
Identity = 56/59 (94.92%), Postives = 57/59 (96.61%), Query Frame = 1


Query: 4   SLSINEFLRPAEGERHYAPGGRGRGRGRGSRGGYSGSSISNVAAPSIEDPGQFPTLGAK 63
           SLSINEFLRPAEGERHY PGGRGRGRGRGSRGGYSGSS+SNVAAPSIEDPGQFP LGAK
Sbjct: 303 SLSINEFLRPAEGERHYTPGGRGRGRGRGSRGGYSGSSMSNVAAPSIEDPGQFPILGAK 361

[Close]

BLAST of Lsi09G016930 vs. NCBI nr
Match: gi|449445497|ref|XP_004140509.1| (PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein-like [Cucumis sativus])

HSP 1 Score: 111.3 bits (277), Expect = 6.1e-22
Identity = 55/59 (93.22%), Postives = 57/59 (96.61%), Query Frame = 1


Query: 4   SLSINEFLRPAEGERHYAPGGRGRGRGRGSRGGYSGSSISNVAAPSIEDPGQFPTLGAK 63
           SLSINEFLRPA+GERHYAPGGRGRGRGRGSRGGYSGS +SNVAAPSI DPGQFPTLGAK
Sbjct: 303 SLSINEFLRPADGERHYAPGGRGRGRGRGSRGGYSGSPMSNVAAPSIGDPGQFPTLGAK 361

[Close]

BLAST of Lsi09G016930 vs. NCBI nr
Match: gi|731420480|ref|XP_010661405.1| (PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein [Vitis vinifera])

HSP 1 Score: 100.5 bits (249), Expect = 1.1e-18
Identity = 50/60 (83.33%), Postives = 57/60 (95.00%), Query Frame = 1


Query: 4   SLSINEFLRPAEGERHYAPGGRGRGRGRGSRGGY-SGSSISNVAAPSIEDPGQFPTLGAK 63
           ++SINEFL+PAEGER Y+PGGRGRGRGRGSRGGY  G+++SNVAAPSIEDPGQFPTLGAK
Sbjct: 302 AVSINEFLKPAEGERFYSPGGRGRGRGRGSRGGYGGGNAMSNVAAPSIEDPGQFPTLGAK 361

[Close]

BLAST of Lsi09G016930 vs. NCBI nr
Match: gi|449466564|ref|XP_004150996.1| (PREDICTED: cyclin-dependent kinase 13-like [Cucumis sativus])

HSP 1 Score: 100.5 bits (249), Expect = 1.1e-18
Identity = 53/61 (86.89%), Postives = 57/61 (93.44%), Query Frame = 1


Query: 4   SLSINEFLRPAEGERHYAPGGRGRGRGRGSR-GGYSGSSI-SNVAAPSIEDPGQFPTLGA 63
           S+SINEFL+PAEGE+HY PGGRGRGRGRGSR GGY GSS+ SNVAAPSIEDPGQFPTLGA
Sbjct: 300 SVSINEFLKPAEGEKHYTPGGRGRGRGRGSRGGGYVGSSMSSNVAAPSIEDPGQFPTLGA 359

[Close]

BLAST of Lsi09G016930 vs. NCBI nr
Match: gi|703131209|ref|XP_010104826.1| (hypothetical protein L484_024026 [Morus notabilis])

HSP 1 Score: 99.4 bits (246), Expect = 2.4e-18
Identity = 51/58 (87.93%), Postives = 53/58 (91.38%), Query Frame = 1


Query: 4   SLSINEFLRPAEGERHYAPGGRGRGRGRGSRGGYSGS-SISNVAAPSIEDPGQFPTLG 61
           SLSINEFL+PAEGER+Y PGGRGRGRGRGSRGGY G  S SNVAAPSIEDPGQFPTLG
Sbjct: 332 SLSINEFLKPAEGERYYTPGGRGRGRGRGSRGGYGGGYSSSNVAAPSIEDPGQFPTLG 389

The following BLAST results are available for this feature:

BLAST of Lsi09G016930 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi09G016930 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9Z4_CUCSA	4.2e-22	93.22	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G106180 PE=4 SV=1	[more]
D7SLZ5_VITVI	7.5e-19	83.33	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0021g01420 PE=4 SV=...	[more]
A0A0A0KCI2_CUCSA	7.5e-19	86.89	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G105680 PE=4 SV=1	[more]
W9RPW5_9ROSA	1.7e-18	87.93	Uncharacterized protein OS=Morus notabilis GN=L484_024026 PE=4 SV=1	[more]
A0A151RAW5_CAJCA	1.7e-18	81.36	Uncharacterized protein OS=Cajanus cajan GN=KK1_038893 PE=4 SV=1	[more]

BLAST of Lsi09G016930 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G16830.1	4.8e-09	53.23	Hyaluronan / mRNA binding family	[more]
AT5G47210.1	5.3e-08	55.93	Hyaluronan / mRNA binding family	[more]

BLAST of Lsi09G016930 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659119706\|ref\|XP_008459799.1\|	1.6e-22	94.92	PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein-like [Cucumis m...	[more]
gi\|449445497\|ref\|XP_004140509.1\|	6.1e-22	93.22	PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein-like [Cucumis s...	[more]
gi\|731420480\|ref\|XP_010661405.1\|	1.1e-18	83.33	PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein [Vitis vinifera...	[more]
gi\|449466564\|ref\|XP_004150996.1\|	1.1e-18	86.89	PREDICTED: cyclin-dependent kinase 13-like [Cucumis sativus]	[more]
gi\|703131209\|ref\|XP_010104826.1\|	2.4e-18	87.93	hypothetical protein L484_024026 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G016930.1	Lsi09G016930.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR12299	HYALURONIC ACID-BINDING PROTEIN 4	coord: 4..62 score: 2.8
None	No IPR available	PANTHER	PTHR12299:SF24	SUBFAMILY NOT NAMED	coord: 4..62 score: 2.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi09G016930	Cla006724	Watermelon (97103) v1	lsiwmB036
Lsi09G016930	MELO3C022289	Melon (DHL92) v3.5.1	lsimeB017

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi09G016930	Melon (DHL92) v3.6.1	lsimedB019
Lsi09G016930	Silver-seed gourd	carlsiB070
Lsi09G016930	Silver-seed gourd	carlsiB883
Lsi09G016930	Cucumber (Chinese Long) v3	cuclsiB420
Lsi09G016930	Cucumber (Chinese Long) v3	cuclsiB424
Lsi09G016930	Watermelon (97103) v2	lsiwmbB026
Lsi09G016930	Wax gourd	lsiwgoB011
Lsi09G016930	Cucumber (Gy14) v1	cgylsiB170
Lsi09G016930	Cucumber (Gy14) v1	cgylsiB562
Lsi09G016930	Cucurbita maxima (Rimu)	cmalsiB331
Lsi09G016930	Cucurbita maxima (Rimu)	cmalsiB814
Lsi09G016930	Cucurbita moschata (Rifu)	cmolsiB320
Lsi09G016930	Cucurbita moschata (Rifu)	cmolsiB800
Lsi09G016930	Cucurbita pepo (Zucchini)	cpelsiB101
Lsi09G016930	Cucurbita pepo (Zucchini)	cpelsiB251
Lsi09G016930	Wild cucumber (PI 183967)	cpilsiB399
Lsi09G016930	Wild cucumber (PI 183967)	cpilsiB404
Lsi09G016930	Cucumber (Chinese Long) v2	culsiB396
Lsi09G016930	Cucumber (Chinese Long) v2	culsiB402
Lsi09G016930	Watermelon (Charleston Gray)	lsiwcgB029
Lsi09G016930	Cucumber (Gy14) v2	cgyblsiB362
Lsi09G016930	Cucumber (Gy14) v2	cgyblsiB366