Lsi09G016480 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi09G016480
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	NAC domain transcription factor
Location	chr09 : 24797649 .. 24797972 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGATTTCTGGCTACCAATTGGAGTCCTCTTCCCTCTCTGCCGCCACGGCTCCTCACAACTGGGCGGCGTTCGACCGACTAGTGGCGTCGCAGCTCAATGGCCAAATCGAAGTATCCAACATGATTTATTACAGTGATCAATTGCCAACTCCAACACTACGCGGAACGACATCGTTTTCATCTAAATCTTCATCTTCTTCTTACAACGCCGCCGCCATAGCCGCCTCTCAAGATTACAACAACGTCGACACAGAGCTATGGAGCTTTGCCAGGTTGTCGTCTACTGACCCATTATGCCACGTGTCCGACACTCCCATATAA

mRNA sequence

ATGATGATTTCTGGCTACCAATTGGAGTCCTCTTCCCTCTCTGCCGCCACGGCTCCTCACAACTGGGCGGCGTTCGACCGACTAGTGGCGTCGCAGCTCAATGGCCAAATCGAAGTATCCAACATGATTTATTACAGTGATCAATTGCCAACTCCAACACTACGCGGAACGACATCGTTTTCATCTAAATCTTCATCTTCTTCTTACAACGCCGCCGCCATAGCCGCCTCTCAAGATTACAACAACGTCGACACAGAGCTATGGAGCTTTGCCAGGTTGTCGTCTACTGACCCATTATGCCACGTGTCCGACACTCCCATATAA

Coding sequence (CDS)

ATGATGATTTCTGGCTACCAATTGGAGTCCTCTTCCCTCTCTGCCGCCACGGCTCCTCACAACTGGGCGGCGTTCGACCGACTAGTGGCGTCGCAGCTCAATGGCCAAATCGAAGTATCCAACATGATTTATTACAGTGATCAATTGCCAACTCCAACACTACGCGGAACGACATCGTTTTCATCTAAATCTTCATCTTCTTCTTACAACGCCGCCGCCATAGCCGCCTCTCAAGATTACAACAACGTCGACACAGAGCTATGGAGCTTTGCCAGGTTGTCGTCTACTGACCCATTATGCCACGTGTCCGACACTCCCATATAA

Protein sequence

MMISGYQLESSSLSAATAPHNWAAFDRLVASQLNGQIEVSNMIYYSDQLPTPTLRGTTSFSSKSSSSSYNAAAIAASQDYNNVDTELWSFARLSSTDPLCHVSDTPI

Homology

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BLAST of Lsi09G016480 vs. TrEMBL
Match: A0A0A0KDU5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G107870 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 1.7e-39
Identity = 92/110 (83.64%), Postives = 99/110 (90.00%), Query Frame = 1


Query: 1   MMISGYQLESSSLSAATAPHNWAAFDRLVASQLNGQIEVSNMIYYSDQLP-TPTLRGTTS 60
           M++SGYQL+SSS+  ++APHNWAAFDRLVASQLNGQ+EVSNMIYYSDQLP T TLR TTS
Sbjct: 298 MIVSGYQLDSSSV-VSSAPHNWAAFDRLVASQLNGQVEVSNMIYYSDQLPTTTTLRATTS 357

Query: 61  FSSKSSSSSYNA--AAIAASQDYNNVDTELWSFARLSSTDPLCHVSDTPI 108
           FSSKSSSSSYNA  AA  A QDYNNVDTELWSFARLSSTDPLCHVSDT I
Sbjct: 358 FSSKSSSSSYNAVVAAPTAPQDYNNVDTELWSFARLSSTDPLCHVSDTTI 406

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BLAST of Lsi09G016480 vs. TrEMBL
Match: M5X7Y1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020746mg PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.7e-10
Identity = 54/103 (52.43%), Postives = 62/103 (60.19%), Query Frame = 1


Query: 21  NWAAFDRLVASQLNGQIEVSNMI-YYSD-----------QLPTPTLRGTTSFSSKSSSSS 80
           NWAA DR VASQLNGQ E S  +  +SD           QLPT TLR   S SS SS+ S
Sbjct: 302 NWAALDRFVASQLNGQAETSRQLACFSDPYDCNDDNHELQLPT-TLR---SISSSSSNKS 361

Query: 81  YNAAAIAASQDYNNVDTELWSFAR----LSSTDPLCHVSDTPI 108
           Y+     A+QDYNN +  LWSFAR    LSS+D LCHVS+  I
Sbjct: 362 YH-----ATQDYNNGEINLWSFARQSSSLSSSDALCHVSNGSI 395

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BLAST of Lsi09G016480 vs. TrEMBL
Match: A0A0H3VAS8_9ROSA (NAC2 transcription factor OS=Eriobotrya japonica GN=NAC2 PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.6e-08
Identity = 50/113 (44.25%), Postives = 61/113 (53.98%), Query Frame = 1


Query: 18  APH------NWAAFDRLVASQLNGQIEVSNMI--YYSDQLPTPT-----------LRGTT 77
           APH      NWAAFDRLVASQLNGQ E S  +  + +D   T +           LRG+ 
Sbjct: 314 APHMDSGLTNWAAFDRLVASQLNGQNETSRQLACFITDPHNTFSYDNDDNDHELQLRGSL 373

Query: 78  SFSSKSSSSSYNAAAIAASQDYNNVDTELWSFAR----LSSTDPLCHVSDTPI 108
           S  +KS           A+ DYNN  T+LW+F R    LSS+D LCHVS+ PI
Sbjct: 374 SSPNKS---------YQATHDYNNSATDLWNFDRQSSSLSSSDTLCHVSNGPI 417

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BLAST of Lsi09G016480 vs. TrEMBL
Match: A0A061E007_THECC (Transcription factor OS=Theobroma cacao GN=TCM_005047 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.7e-07
Identity = 49/105 (46.67%), Postives = 56/105 (53.33%), Query Frame = 1


Query: 21  NWAAFDRLVASQLNGQIEVS---------NMIYYS----DQLPTPTLRGTTSFSSKSSSS 80
           NWAA DRLVASQLNGQ E S         NM Y S      L  P LR     SS SS  
Sbjct: 293 NWAALDRLVASQLNGQTETSRQLACFNDHNMAYCSPTDHHDLQLPALRS----SSISSGR 352

Query: 81  SYNAAAIAASQDYNNVDTELWSFAR-----LSSTDPLCHVSDTPI 108
           SY+       QDYN+ + +LWSF R     LSS+DPLCHV +  +
Sbjct: 353 SYH----GTHQDYNS-EIDLWSFTRSSSSSLSSSDPLCHVVNASV 388

[Close]

BLAST of Lsi09G016480 vs. TrEMBL
Match: V7ASW2_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_010G118700g PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.3e-07
Identity = 43/100 (43.00%), Postives = 64/100 (64.00%), Query Frame = 1


Query: 21  NWAAFDRLVASQLNGQIEVS-NMIYYSD----------QLPTPTLRGTTSFSSKSSSSSY 80
           NWAA DRLVASQLNGQ E S +   ++D           LP PTLR +++ SS S+ +  
Sbjct: 325 NWAALDRLVASQLNGQTEASRHFACFNDPTIAYCTTHHDLPLPTLRSSSNPSSTSTLTRP 384

Query: 81  NAAA--IAASQDYNNVDTELWSFARLSSTDPLCHVSDTPI 108
           +AA+  I  + D+ + + +LW+F R S+++PLCHVS+T +
Sbjct: 385 SAASAYINPAHDFTS-EIDLWNFTR-STSEPLCHVSNTSL 422

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BLAST of Lsi09G016480 vs. NCBI nr
Match: gi|659119618|ref|XP_008459751.1| (PREDICTED: NAC domain-containing protein 43 [Cucumis melo])

HSP 1 Score: 173.7 bits (439), Expect = 1.7e-40
Identity = 94/111 (84.68%), Postives = 101/111 (90.99%), Query Frame = 1


Query: 1   MMISGYQLESSSLSAATAPHNWAAFDRLVASQLNGQIEVSNMIYYSDQLP-TPTLRGTTS 60
           M++SGYQL+SSS+S+  APHNWAAFDRLVASQLNGQ+EVSNMIYYSDQLP T TLRGTTS
Sbjct: 297 MIVSGYQLDSSSVSS--APHNWAAFDRLVASQLNGQVEVSNMIYYSDQLPTTTTLRGTTS 356

Query: 61  FSSKSSSSSYN---AAAIAASQDYNNVDTELWSFARLSSTDPLCHVSDTPI 108
           FSSKSSSSSYN   AAA  A+QDYNNVDTELWSFARLSSTDPLCHVSDT I
Sbjct: 357 FSSKSSSSSYNAVVAAAATATQDYNNVDTELWSFARLSSTDPLCHVSDTTI 405

[Close]

BLAST of Lsi09G016480 vs. NCBI nr
Match: gi|778712161|ref|XP_011656855.1| (PREDICTED: NAC domain-containing protein 43 [Cucumis sativus])

HSP 1 Score: 169.9 bits (429), Expect = 2.5e-39
Identity = 92/110 (83.64%), Postives = 99/110 (90.00%), Query Frame = 1


Query: 1   MMISGYQLESSSLSAATAPHNWAAFDRLVASQLNGQIEVSNMIYYSDQLP-TPTLRGTTS 60
           M++SGYQL+SSS+  ++APHNWAAFDRLVASQLNGQ+EVSNMIYYSDQLP T TLR TTS
Sbjct: 298 MIVSGYQLDSSSV-VSSAPHNWAAFDRLVASQLNGQVEVSNMIYYSDQLPTTTTLRATTS 357

Query: 61  FSSKSSSSSYNA--AAIAASQDYNNVDTELWSFARLSSTDPLCHVSDTPI 108
           FSSKSSSSSYNA  AA  A QDYNNVDTELWSFARLSSTDPLCHVSDT I
Sbjct: 358 FSSKSSSSSYNAVVAAPTAPQDYNNVDTELWSFARLSSTDPLCHVSDTTI 406

[Close]

BLAST of Lsi09G016480 vs. NCBI nr
Match: gi|645254472|ref|XP_008233055.1| (PREDICTED: NAC domain-containing protein 43 [Prunus mume])

HSP 1 Score: 76.6 bits (187), Expect = 2.9e-11
Identity = 53/103 (51.46%), Postives = 62/103 (60.19%), Query Frame = 1


Query: 21  NWAAFDRLVASQLNGQIEVSNMI------------YYSDQLPTPTLRGTTSFSSKSSSSS 80
           NWAA DR VASQLNGQ E S  +            ++  QLPT TLR   S SS SS+ S
Sbjct: 307 NWAALDRFVASQLNGQAETSRQLACFSDPYDCNDDHHELQLPT-TLR---SISSSSSNKS 366

Query: 81  YNAAAIAASQDYNNVDTELWSFAR----LSSTDPLCHVSDTPI 108
           Y+     A+QDYNN +  LWSFAR    LSS+D LCHVS+ PI
Sbjct: 367 YH-----ATQDYNNGEINLWSFARQSSSLSSSDALCHVSNGPI 400

[Close]

BLAST of Lsi09G016480 vs. NCBI nr
Match: gi|596054833|ref|XP_007220855.1| (hypothetical protein PRUPE_ppa020746mg [Prunus persica])

HSP 1 Score: 73.6 bits (179), Expect = 2.4e-10
Identity = 54/103 (52.43%), Postives = 62/103 (60.19%), Query Frame = 1


Query: 21  NWAAFDRLVASQLNGQIEVSNMI-YYSD-----------QLPTPTLRGTTSFSSKSSSSS 80
           NWAA DR VASQLNGQ E S  +  +SD           QLPT TLR   S SS SS+ S
Sbjct: 302 NWAALDRFVASQLNGQAETSRQLACFSDPYDCNDDNHELQLPT-TLR---SISSSSSNKS 361

Query: 81  YNAAAIAASQDYNNVDTELWSFAR----LSSTDPLCHVSDTPI 108
           Y+     A+QDYNN +  LWSFAR    LSS+D LCHVS+  I
Sbjct: 362 YH-----ATQDYNNGEINLWSFARQSSSLSSSDALCHVSNGSI 395

[Close]

BLAST of Lsi09G016480 vs. NCBI nr
Match: gi|502170842|ref|XP_004514929.1| (PREDICTED: NAC domain-containing protein 43-like [Cicer arietinum])

HSP 1 Score: 70.5 bits (171), Expect = 2.0e-09
Identity = 49/128 (38.28%), Postives = 73/128 (57.03%), Query Frame = 1


Query: 2   MISGYQLESSSLSAATAPHNWAAFDRLVASQLNGQIEVSNMI-YYSD-----------QL 61
           M++  +  SSS    +   NW A DRLVASQLNGQ E +  +  ++D            L
Sbjct: 302 MVNPLETSSSSTQMVSGLTNWVALDRLVASQLNGQTEATRQLACFNDPTIGYCTNDHHDL 361

Query: 62  PTPTLRGTTSFSS-----KSSSSSYNAAAIAASQDYNNVDTELWSFAR-----LSSTDPL 108
             PTLR ++S SS     K+++S+  +  I  SQDY + + +LW+FAR     LSS++P+
Sbjct: 362 QFPTLRSSSSTSSISIHAKATTSTTTSTYITPSQDYTS-EIDLWNFARSTSSLLSSSEPI 421

The following BLAST results are available for this feature:

BLAST of Lsi09G016480 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi09G016480 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDU5_CUCSA	1.7e-39	83.64	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G107870 PE=4 SV=1	[more]
M5X7Y1_PRUPE	1.7e-10	52.43	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa020746mg PE=4 SV=1	[more]
A0A0H3VAS8_9ROSA	1.6e-08	44.25	NAC2 transcription factor OS=Eriobotrya japonica GN=NAC2 PE=2 SV=1	[more]
A0A061E007_THECC	1.7e-07	46.67	Transcription factor OS=Theobroma cacao GN=TCM_005047 PE=4 SV=1	[more]
V7ASW2_PHAVU	2.3e-07	43.00	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_010G118700g PE=4 SV=1	[more]

BLAST of Lsi09G016480 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi09G016480 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659119618\|ref\|XP_008459751.1\|	1.7e-40	84.68	PREDICTED: NAC domain-containing protein 43 [Cucumis melo]	[more]
gi\|778712161\|ref\|XP_011656855.1\|	2.5e-39	83.64	PREDICTED: NAC domain-containing protein 43 [Cucumis sativus]	[more]
gi\|645254472\|ref\|XP_008233055.1\|	2.9e-11	51.46	PREDICTED: NAC domain-containing protein 43 [Prunus mume]	[more]
gi\|596054833\|ref\|XP_007220855.1\|	2.4e-10	52.43	hypothetical protein PRUPE_ppa020746mg [Prunus persica]	[more]
gi\|502170842\|ref\|XP_004514929.1\|	2.0e-09	38.28	PREDICTED: NAC domain-containing protein 43-like [Cicer arietinum]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G016480.1	Lsi09G016480.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi09G016480	Cla006697	Watermelon (97103) v1	lsiwmB042
Lsi09G016480	ClCG06G002730	Watermelon (Charleston Gray)	lsiwcgB026
Lsi09G016480	MELO3C022254.2	Melon (DHL92) v3.6.1	lsimedB020
Lsi09G016480	Cla97C06G112090	Watermelon (97103) v2	lsiwmbB024
Lsi09G016480	Cp4.1LG12g04350	Cucurbita pepo (Zucchini)	cpelsiB105
Lsi09G016480	CsGy6G008610	Cucumber (Gy14) v2	cgyblsiB364
Lsi09G016480	Carg26680	Silver-seed gourd	carlsiB821
Lsi09G016480	CsaV3_6G008900	Cucumber (Chinese Long) v3	cuclsiB422

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi09G016480	Cucumber (Gy14) v1	cgylsiB169
Lsi09G016480	Cucumber (Gy14) v1	cgylsiB171
Lsi09G016480	Cucurbita maxima (Rimu)	cmalsiB331
Lsi09G016480	Cucurbita maxima (Rimu)	cmalsiB817
Lsi09G016480	Cucurbita moschata (Rifu)	cmolsiB320
Lsi09G016480	Cucurbita moschata (Rifu)	cmolsiB803
Lsi09G016480	Cucurbita pepo (Zucchini)	cpelsiB101
Lsi09G016480	Cucurbita pepo (Zucchini)	cpelsiB248
Lsi09G016480	Wild cucumber (PI 183967)	cpilsiB401
Lsi09G016480	Wild cucumber (PI 183967)	cpilsiB404
Lsi09G016480	Cucumber (Chinese Long) v2	culsiB398
Lsi09G016480	Cucumber (Chinese Long) v2	culsiB402
Lsi09G016480	Melon (DHL92) v3.5.1	lsimeB017
Lsi09G016480	Watermelon (Charleston Gray)	lsiwcgB029
Lsi09G016480	Watermelon (97103) v1	lsiwmB036
Lsi09G016480	Cucumber (Gy14) v2	cgyblsiB366
Lsi09G016480	Melon (DHL92) v3.6.1	lsimedB019
Lsi09G016480	Silver-seed gourd	carlsiB545
Lsi09G016480	Silver-seed gourd	carlsiB820
Lsi09G016480	Cucumber (Chinese Long) v3	cuclsiB424
Lsi09G016480	Watermelon (97103) v2	lsiwmbB026
Lsi09G016480	Wax gourd	lsiwgoB011