Lsi09G016450 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi09G016450
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr09 : 24762655 .. 24763583 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACACTCTCTCTTCAACAACCCTTTCACCACATCTCCCTTCAATTTTACAATTCAAGTAAGTATATATTCATTCAATTCTTGTCAAGATAACTACAAGATTAATTAATATTATTGTTTCTTGCAAATTCTTTTAATTAATTACACTTTCATTCTTTTTCTTTTTTCCATTTTTAGGGATTGGTCAACAACTCTCTCGTGATTTGCAATTGCAACCTTCAAGAGAGGAAGATGTAGGCAAAATTGACTATGGAATCTTTGCCTCAATTGATTCACAAGTGTTTAAACGAATTGCAACAGAGTTAGATCATGATTTCAATGGTAATAAATAAATATATATATATAATATATAATTTGAAAGAAAATTTTCTAAAATCTTGTGGTAATTTAATTTGTCTCAGCATTGATTACTGTAACGAATTCACAAGTGAAATTCACTTTTGAAGGTAGAGAGATAAGTACTCTTCACAAAGAGGTATATATAATCAATTCTTTTGCTTTCATTATTAATAATAAATACATTTGATGATTAGTGGTTGATAATTATGTTTTGTGCAGAGAAAAGAATGCATAATTGGAGGGCTTTCAGAGGGAGAAGAAGCTCGATTCTTAGTGTACTTAGAGCCCACAATTTTTTTTCGTGGTGTGGTTTATCAGTCAAAAAGGATATGGATATTCAAGTCTCCTAATTCCTCTAGTATAATTGTTGCTCCTATTGAATTGTATGCTCAATTTTGCGTCTATTTTTCCCAGTGAGGAAAATTCCAAGAGATAAAAATGTTTTAGATATGTTGATATCATTTTTTCTTCATCATAATAAAATTGAAATATCAACTATAACCATCTTTACACAATTTTTTCTCATAATATATTGTGTATCTTATGTATCTAGGTATTCTCAAATTGATTTTTATTTACAAATTATATAA

mRNA sequence

ATGACACTCTCTCTTCAACAACCCTTTCACCACATCTCCCTTCAATTTTACAATTCAAGGATTGGTCAACAACTCTCTCGTGATTTGCAATTGCAACCTTCAAGAGAGGAAGATGTAGGCAAAATTGACTATGGAATCTTTGCCTCAATTGATTCACAAGTGTTTAAACGAATTGCAACAGAGTTAGATCATGATTTCAATGCATTGATTACTGTAACGAATTCACAAGTGAAATTCACTTTTGAAGGTAGAGAGATAAGTACTCTTCACAAAGAGAGAAAAGAATGCATAATTGGAGGGCTTTCAGAGGGAGAAGAAGCTCGATTCTTAGTGTACTTAGAGCCCACAATTTTTTTTCGTGGTGTGGTTTATCAGTCAAAAAGGATATGGATATTCAAGTCTCCTAATTCCTCTAGTATAATTGTTGCTCCTATTGAATTGTATGCTCAATTTTGCGTCTATTTTTCCCAGTATTCTCAAATTGATTTTTATTTACAAATTATATAA

Coding sequence (CDS)

ATGACACTCTCTCTTCAACAACCCTTTCACCACATCTCCCTTCAATTTTACAATTCAAGGATTGGTCAACAACTCTCTCGTGATTTGCAATTGCAACCTTCAAGAGAGGAAGATGTAGGCAAAATTGACTATGGAATCTTTGCCTCAATTGATTCACAAGTGTTTAAACGAATTGCAACAGAGTTAGATCATGATTTCAATGCATTGATTACTGTAACGAATTCACAAGTGAAATTCACTTTTGAAGGTAGAGAGATAAGTACTCTTCACAAAGAGAGAAAAGAATGCATAATTGGAGGGCTTTCAGAGGGAGAAGAAGCTCGATTCTTAGTGTACTTAGAGCCCACAATTTTTTTTCGTGGTGTGGTTTATCAGTCAAAAAGGATATGGATATTCAAGTCTCCTAATTCCTCTAGTATAATTGTTGCTCCTATTGAATTGTATGCTCAATTTTGCGTCTATTTTTCCCAGTATTCTCAAATTGATTTTTATTTACAAATTATATAA

Protein sequence

MTLSLQQPFHHISLQFYNSRIGQQLSRDLQLQPSREEDVGKIDYGIFASIDSQVFKRIATELDHDFNALITVTNSQVKFTFEGREISTLHKERKECIIGGLSEGEEARFLVYLEPTIFFRGVVYQSKRIWIFKSPNSSSIIVAPIELYAQFCVYFSQYSQIDFYLQII
Homology
[Close]
BLAST of Lsi09G016450 vs. TrEMBL
Match: A0A0A0KCY3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002350 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 1.0e-41
Identity = 96/158 (60.76%), Postives = 117/158 (74.05%), Query Frame = 1 

Query: 6   QQPFHHISLQFYNSRIGQQ---LSRDLQLQPSREEDVGKIDYGIFASIDSQVFKRIATEL 65
           QQP + I LQF N R+      L     L PSREEDVG+IDYGIF SIDS V + IATEL
Sbjct: 8   QQPLNQIFLQFRNPRVVDDQDVLFHGFPLSPSREEDVGEIDYGIFFSIDSLVLRFIATEL 67

Query: 66  DHDFNALITVTNSQVKFTFEGREISTLHKERKECIIGGLSEGEEARFLVYLEPTIFFRGV 125
           D D++AL+T+TNS+VKF+   +EIS L+KE  ECIIGG+++ EE+RF VYL P I FR +
Sbjct: 68  D-DYDALVTLTNSEVKFSVNDKEIS-LYKEVDECIIGGVADEEESRFFVYLNPKILFRDL 127

Query: 126 VYQSKRIWIFKSPNSSSIIVAPIELYAQFCVYFSQYSQ 161
             +S+RIW+FKSPNS SIIVAPI LYAQFCVYF Q  +
Sbjct: 128 ANKSERIWMFKSPNSYSIIVAPIGLYAQFCVYFPQLEE 163

[Close]
BLAST of Lsi09G016450 vs. TrEMBL
Match: A0A0A0K9W8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002330 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 4.1e-19
Identity = 53/122 (43.44%), Postives = 77/122 (63.11%), Query Frame = 1 

Query: 40  GKIDYGIFASIDSQVFKRIATELDHDFNALITVTNSQVKFTFEGREISTLHKERKECIIG 99
           G I+Y  F SIDS+ F+RIA+EL+   +  +T TNS+V F  + +EI T  KE  +C+IG
Sbjct: 131 GDIEYTTFVSIDSRDFRRIASELNSR-SVSVTFTNSRVNFFNKNKEI-TFSKEENQCVIG 190

Query: 100 GLSEGEEARFLVYLEPTIFFRGVVYQSKRIWIFKSPNSSSIIVAPIELYAQFCVYFSQYS 159
           G+ EGEE RF++ + P +FF  +  QSKR+W     + S I++ P+ L+ QF VYF    
Sbjct: 191 GVEEGEEFRFIITVHPLVFFLDLSSQSKRVWFLMQRDFSCIMILPLGLWQQFWVYFPSQC 250

Query: 160 QI 162
            I
Sbjct: 251 HI 250

[Close]
BLAST of Lsi09G016450 vs. TrEMBL
Match: A0A0A0LLD1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G154090 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 9.1e-19
Identity = 57/156 (36.54%), Postives = 91/156 (58.33%), Query Frame = 1 

Query: 1   MTLSLQQPFHHISLQFYNSRIGQQLSRDLQLQPSREEDVGKIDYGIFASIDSQVFKRIAT 60
           M+L L +    + ++FY+ R    L R   ++ +  ED G +D+ IF SIDS  F+ I  
Sbjct: 1   MSLFLFKNLERLLIKFYSPREELPLIRKFGVRYAVFEDFGNVDFEIFVSIDSLQFRHIIQ 60

Query: 61  ELDHDFNALITVTNSQVKFTFEGREISTLHKERKECIIGGLSEGEEARFLVYLEPTIFFR 120
           E   D+   +T T+S V+F  E +EI    KE  ECII G+ +G    FL+ + PT  + 
Sbjct: 61  EC-RDYMVRVTPTHSHVRFCNEVKEI-IFKKEEGECIIEGVGKGPAVEFLIPVYPTHVYY 120

Query: 121 GVVYQSKRIWIFKSPNS-SSIIVAPIELYAQFCVYF 156
            + +Q++R+W+FKS +   + I+AP+ L+AQF +YF
Sbjct: 121 NITFQAQRVWLFKSADKCGTFIIAPVGLFAQFAIYF 154

[Close]
BLAST of Lsi09G016450 vs. TrEMBL
Match: A0A0A0KNE7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G469020 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.3e-17
Identity = 49/132 (37.12%), Postives = 83/132 (62.88%), Query Frame = 1 

Query: 25  LSRDLQLQPSREEDVGKIDYGIFASIDSQVFKRIATELDHDFNALITVTNSQVKFTFEGR 84
           ++R L L P +     +IDY  F SIDS+ FKR+  E++   +  + +++S+  F+ + +
Sbjct: 1   MTRQLNLLPYKVNQELRIDYKAFVSIDSKDFKRVVLEINAH-SVFVNLSDSEATFSNDNK 60

Query: 85  EISTLHKERKECIIGGLSEGEEARFLVYLEPTIFFRGVVYQSKRIWIFKSPNSSSIIVAP 144
           +I    KE ++CIIGG+ +G+E   L+ L P +FF  + YQ++R+W+F   + S+I+V P
Sbjct: 61  KI-IFTKEERKCIIGGIKKGKEYEVLITLHPLVFFLDLSYQAQRLWLFIQKDFSTILVFP 120

Query: 145 IELYAQFCVYFS 157
             L+ QF VYFS
Sbjct: 121 SGLWTQFWVYFS 130

[Close]
BLAST of Lsi09G016450 vs. TrEMBL
Match: A0A0A0K7E0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002300 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.9e-17
Identity = 53/143 (37.06%), Postives = 88/143 (61.54%), Query Frame = 1 

Query: 14  LQFYNSRIGQQLSRDLQLQPSREEDVGKIDYGIFASIDSQVFKRIATELDHDFNALITVT 73
           L+F + R    L R  +++ + +ED+G ID   F SIDSQ F+R+ T    D+   +T T
Sbjct: 101 LKFSSPRNELPLIRKFRMRCAVKEDMGNIDLETFVSIDSQQFRRVVTGC-RDYFVRVTTT 160

Query: 74  NSQVKFTFEGREISTLHKERKECIIGGLSEGEEARFLVYLEPTIFFRGVVYQSKRIWIFK 133
           +S V+F+ E +E     +E  ECI+ G+ +G+   FL+ + PT  F  + +++KR+W+FK
Sbjct: 161 HSHVRFSNEIKEF-IFAREGGECIMEGVGKGKGTEFLIPIYPTHVFYNITFRAKRVWLFK 220

Query: 134 SPNS-SSIIVAPIELYAQFCVYF 156
           S +   + IVAP+ L+A+F +YF
Sbjct: 221 SIDKLGTFIVAPVGLFARFVIYF 241

[Close]
BLAST of Lsi09G016450 vs. NCBI nr
Match: gi|700190437|gb|KGN45641.1| (hypothetical protein Csa_6G002350 [Cucumis sativus])

HSP 1 Score: 177.9 bits (450), Expect = 1.4e-41
Identity = 96/158 (60.76%), Postives = 117/158 (74.05%), Query Frame = 1 

Query: 6   QQPFHHISLQFYNSRIGQQ---LSRDLQLQPSREEDVGKIDYGIFASIDSQVFKRIATEL 65
           QQP + I LQF N R+      L     L PSREEDVG+IDYGIF SIDS V + IATEL
Sbjct: 8   QQPLNQIFLQFRNPRVVDDQDVLFHGFPLSPSREEDVGEIDYGIFFSIDSLVLRFIATEL 67

Query: 66  DHDFNALITVTNSQVKFTFEGREISTLHKERKECIIGGLSEGEEARFLVYLEPTIFFRGV 125
           D D++AL+T+TNS+VKF+   +EIS L+KE  ECIIGG+++ EE+RF VYL P I FR +
Sbjct: 68  D-DYDALVTLTNSEVKFSVNDKEIS-LYKEVDECIIGGVADEEESRFFVYLNPKILFRDL 127

Query: 126 VYQSKRIWIFKSPNSSSIIVAPIELYAQFCVYFSQYSQ 161
             +S+RIW+FKSPNS SIIVAPI LYAQFCVYF Q  +
Sbjct: 128 ANKSERIWMFKSPNSYSIIVAPIGLYAQFCVYFPQLEE 163

[Close]
BLAST of Lsi09G016450 vs. NCBI nr
Match: gi|659117581|ref|XP_008458677.1| (PREDICTED: uncharacterized protein LOC103498005 [Cucumis melo])

HSP 1 Score: 177.9 bits (450), Expect = 1.4e-41
Identity = 99/165 (60.00%), Postives = 119/165 (72.12%), Query Frame = 1 

Query: 1   MTLSL--QQPFHHISLQFYNSRI---GQQLSRDLQLQPSREEDVGKIDYGIFASIDSQVF 60
           MTLSL  QQP   I+LQF N R+    + L     L PSREEDVG+IDYGIF SI+S VF
Sbjct: 90  MTLSLHPQQPLIQIALQFRNPRVVDDQEALYHAFPLSPSREEDVGEIDYGIFFSIESLVF 149

Query: 61  KRIATELDHDFNALITVTNSQVKFTFEGREISTLHKERKECIIGGLSEGEEARFLVYLEP 120
           + IA ELD DF+AL+T+TNS+VKF+   ++I  L+KER ECIIGG+  GEE+RF VYL P
Sbjct: 150 RFIAIELD-DFDALVTLTNSEVKFSVNDKDI-ILYKERDECIIGGVEIGEESRFFVYLNP 209

Query: 121 TIFFRGVVYQSKRIWIFKSPNSSSIIVAPIELYAQFCVYFSQYSQ 161
            + FR +  QS RIW+FKSP S SI VAPI LYAQFCVYF Q  +
Sbjct: 210 KVLFRDLAEQSARIWMFKSPRSYSITVAPIGLYAQFCVYFPQIEE 252

[Close]
BLAST of Lsi09G016450 vs. NCBI nr
Match: gi|659128753|ref|XP_008464355.1| (PREDICTED: uncharacterized protein LOC103502263 [Cucumis melo])

HSP 1 Score: 104.8 bits (260), Expect = 1.5e-19
Identity = 58/162 (35.80%), Postives = 90/162 (55.56%), Query Frame = 1 

Query: 1   MTLSLQQPFHHISLQFYNSRIGQQLSRDLQLQPSREEDVGKIDYGIFASIDSQVFKRIAT 60
           MT+ L      + L+F +S    ++  +L L PS+EED+G++DY  F SIDS+  +R+  
Sbjct: 90  MTIHLLANIKQLILRFESSSHAPKVHHELSLTPSQEEDLGEVDYAKFFSIDSKDLRRVIR 149

Query: 61  ELD--HDFNALITVTNSQVKFTFEGREISTLHKERKECIIGGLSEGEEARFLVYLEPTIF 120
            L   H  +  +T T SQVKF+   +EI  L KE +EC+I G    EE +F + L P +F
Sbjct: 150 NLPIFHGDSICVTATGSQVKFSIASKEI-VLTKENEECMIVGYEGEEETKFRINLNPMLF 209

Query: 121 FRGVVYQSKRIWIFKSPNSSSIIVAP-IELYAQFCVYFSQYS 160
           F    + + RIW +K+  S   +V P    +AQ+ + F  Y+
Sbjct: 210 FLNFTHDALRIWFYKTTTSHGAMVVPAFGFFAQYVILFPNYN 250

[Close]
BLAST of Lsi09G016450 vs. NCBI nr
Match: gi|700190435|gb|KGN45639.1| (hypothetical protein Csa_6G002330 [Cucumis sativus])

HSP 1 Score: 102.8 bits (255), Expect = 5.9e-19
Identity = 53/122 (43.44%), Postives = 77/122 (63.11%), Query Frame = 1 

Query: 40  GKIDYGIFASIDSQVFKRIATELDHDFNALITVTNSQVKFTFEGREISTLHKERKECIIG 99
           G I+Y  F SIDS+ F+RIA+EL+   +  +T TNS+V F  + +EI T  KE  +C+IG
Sbjct: 131 GDIEYTTFVSIDSRDFRRIASELNSR-SVSVTFTNSRVNFFNKNKEI-TFSKEENQCVIG 190

Query: 100 GLSEGEEARFLVYLEPTIFFRGVVYQSKRIWIFKSPNSSSIIVAPIELYAQFCVYFSQYS 159
           G+ EGEE RF++ + P +FF  +  QSKR+W     + S I++ P+ L+ QF VYF    
Sbjct: 191 GVEEGEEFRFIITVHPLVFFLDLSSQSKRVWFLMQRDFSCIMILPLGLWQQFWVYFPSQC 250

Query: 160 QI 162
            I
Sbjct: 251 HI 250

[Close]
BLAST of Lsi09G016450 vs. NCBI nr
Match: gi|778674138|ref|XP_011650141.1| (PREDICTED: uncharacterized protein LOC101209763 [Cucumis sativus])

HSP 1 Score: 101.7 bits (252), Expect = 1.3e-18
Identity = 57/156 (36.54%), Postives = 91/156 (58.33%), Query Frame = 1 

Query: 1   MTLSLQQPFHHISLQFYNSRIGQQLSRDLQLQPSREEDVGKIDYGIFASIDSQVFKRIAT 60
           M+L L +    + ++FY+ R    L R   ++ +  ED G +D+ IF SIDS  F+ I  
Sbjct: 103 MSLFLFKNLERLLIKFYSPREELPLIRKFGVRYAVFEDFGNVDFEIFVSIDSLQFRHIIQ 162

Query: 61  ELDHDFNALITVTNSQVKFTFEGREISTLHKERKECIIGGLSEGEEARFLVYLEPTIFFR 120
           E   D+   +T T+S V+F  E +EI    KE  ECII G+ +G    FL+ + PT  + 
Sbjct: 163 EC-RDYMVRVTPTHSHVRFCNEVKEI-IFKKEEGECIIEGVGKGPAVEFLIPVYPTHVYY 222

Query: 121 GVVYQSKRIWIFKSPNS-SSIIVAPIELYAQFCVYF 156
            + +Q++R+W+FKS +   + I+AP+ L+AQF +YF
Sbjct: 223 NITFQAQRVWLFKSADKCGTFIIAPVGLFAQFAIYF 256

The following BLAST results are available for this feature:
BLAST of Lsi09G016450 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi09G016450 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KCY3_CUCSA1.0e-4160.76Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002350 PE=4 SV=1[more]
A0A0A0K9W8_CUCSA4.1e-1943.44Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002330 PE=4 SV=1[more]
A0A0A0LLD1_CUCSA9.1e-1936.54Uncharacterized protein OS=Cucumis sativus GN=Csa_2G154090 PE=4 SV=1[more]
A0A0A0KNE7_CUCSA1.3e-1737.12Uncharacterized protein OS=Cucumis sativus GN=Csa_5G469020 PE=4 SV=1[more]
A0A0A0K7E0_CUCSA2.9e-1737.06Uncharacterized protein OS=Cucumis sativus GN=Csa_6G002300 PE=4 SV=1[more]
BLAST of Lsi09G016450 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi09G016450 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190437|gb|KGN45641.1|1.4e-4160.76hypothetical protein Csa_6G002350 [Cucumis sativus][more]
gi|659117581|ref|XP_008458677.1|1.4e-4160.00PREDICTED: uncharacterized protein LOC103498005 [Cucumis melo][more]
gi|659128753|ref|XP_008464355.1|1.5e-1935.80PREDICTED: uncharacterized protein LOC103502263 [Cucumis melo][more]
gi|700190435|gb|KGN45639.1|5.9e-1943.44hypothetical protein Csa_6G002330 [Cucumis sativus][more]
gi|778674138|ref|XP_011650141.1|1.3e-1836.54PREDICTED: uncharacterized protein LOC101209763 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi09G016450.1Lsi09G016450.1mRNA