Lsi09G015080 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi09G015080
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Desiccation-related protein PCC13-62
Location	chr09 : 23130753 .. 23132521 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAAGTTAGGATCCACCTAATTACCTTGTTTTTTCTTGCATCAGTTGGTGTTGGCGTCAGCATATCAAATGAACGTGGCAATCAAACTTTAAATCTGCATCCTCTGCCTGCCATCTACTCTTCTCATACATTTACCAACTCCAAGCAGTAGCCTATAAAAAGGGCACAAGTGAGGTTCAAAGCCATATCATTACAACGGTTGAAAAGTAAATATCAAACCATGGGAGAATATGGTATAAGCATTACCGCCGCAGTTGTCAGCTTCCTCATCATCCTCCATCTGCCAACTCATTGTAATGCAATTGTCAGAAAGGCAAATAATTCCATTCCCCAAGAAGATGTTGATCTTATAGAATTCGCACTGAATTTAGAGTATCTAGAAGCCGAACTCTTCTTATATGGTCCTCTGGGATATGGTTTGGATAAAGTTGCACCAAATCTAACCATGGGAGGGCCACCCCCCATTGGTGCTAAAATGGCTAACTTGGGTCCTTTCATCAAGGACATCATATTGCAATTTGGCTACCAGGAAGTTGGTCACTTGAGGTATTTTTTTTTTCTAGTTGACATCCACTGACTTTTTACTGTCATATGAGTCTCTGCAAGTCATTTCACATCACACATTTATGTAGGGCAATAAAAAATAGAGTCGAAGGATTTCCAAGGCCATTGCTGGACTTGAGTTCAGCGACATTTGCCAAAGTGATGGACAAAGCATTTGATCGTCAGTTGAAACCACCTTTTGACCCTTATGCTAATGGCTTGAATTTCCTTCTCGCATCCTACCTTATTCCTTATGTTGGACTCACTGGGTATGTTGGAGCAAATCCAAGACTCGAATCTGCTGTCGCCAAGAAGGTATTCTAATAGAACCCAAACAAAACTAGAATTATATTGCAATGTAAAAGATGAACTTACAAGATAAACTAAGTATTTCAGAAATTTGGACCTGAGATCACTCAAGCCATAAACCAACTGAATCAGCGTCTAAAGTCCTCCTTTCCGAAACTCCATACCAACCTTTCCAACTAATCACTAACGTACCTTTATAATATCCCTAAGAATGCTTAGATTCCTATTATATTCCCTGAAATTCAAAGATAAATTTAATGCTTACATACATACATAACACTAACCACAATTCTACGAGCCAATGTTTCAGCTTGTTGCAGGACTTCTGGGTGTTGAATCGGGTCAAGATGCAGTAATCAGAACGCTACTTTATCAACGTGCAGCAGAAAAGGTTGAACCATATGGAGTGACAGTGGCAGAGTTCACGGAGCGCATTTCAGATCTGCGGAATAAATTAGGACGTGCAGGTATAAAAGATGAAGGCATTGTGGTACCCGAAAACGAGGGTGCTGAGGGTAAGATTACAGGGAACGTGCTTGCTGGAAATCAGAACTCACTCGCATATCCAAGAACGCCCGAGGAGATTTTAAGGATTGTGTATGGTGGAGGTAATGAGCATGTTCCTGGGGGTTTCTATCCAAAGGGAGCCGATGGCCACATAGCTAAATCCAATGCACTTAGCAAATAATGCTGTTCTAGATGTTTTCTACTTCTAGATCATCAATAAAGAGGATTTCACTTGCTTTATCATGGAGTCATCCTTCTCCTCCCAGCTCATCTATCGTTCTATCACAATATAGGTGTTTTTAGTTACTATTCCACAGATAGAAGTCTCTTCTGTATTCTATTTCATCAATCAATGAAACGGTTTCCCTTTCCTATTTATAAAAATAAAATTCCAATAGTAATCACGATTT

mRNA sequence

GGAAGTTAGGATCCACCTAATTACCTTGTTTTTTCTTGCATCAGTTGGTGTTGGCGTCAGCATATCAAATGAACGTGGCAATCAAACTTTAAATCTGCATCCTCTGCCTGCCATCTACTCTTCTCATACATTTACCAACTCCAAGCAGTAGCCTATAAAAAGGGCACAAGTGAGGTTCAAAGCCATATCATTACAACGGTTGAAAAGTAAATATCAAACCATGGGAGAATATGGTATAAGCATTACCGCCGCAGTTGTCAGCTTCCTCATCATCCTCCATCTGCCAACTCATTGTAATGCAATTGTCAGAAAGGCAAATAATTCCATTCCCCAAGAAGATGTTGATCTTATAGAATTCGCACTGAATTTAGAGTATCTAGAAGCCGAACTCTTCTTATATGGTCCTCTGGGATATGGTTTGGATAAAGTTGCACCAAATCTAACCATGGGAGGGCCACCCCCCATTGGTGCTAAAATGGCTAACTTGGGTCCTTTCATCAAGGACATCATATTGCAATTTGGCTACCAGGAAGTTGGTCACTTGAGGGCAATAAAAAATAGAGTCGAAGGATTTCCAAGGCCATTGCTGGACTTGAGTTCAGCGACATTTGCCAAAGTGATGGACAAAGCATTTGATCGTCAGTTGAAACCACCTTTTGACCCTTATGCTAATGGCTTGAATTTCCTTCTCGCATCCTACCTTATTCCTTATGTTGGACTCACTGGGTATCTTGTTGCAGGACTTCTGGGTGTTGAATCGGGTCAAGATGCAGTAATCAGAACGCTACTTTATCAACGTGCAGCAGAAAAGGTTGAACCATATGGAGTGACAGTGGCAGAGTTCACGGAGCGCATTTCAGATCTGCGGAATAAATTAGGACGTGCAGGTATAAAAGATGAAGGCATTGTGGTACCCGAAAACGAGGGTGCTGAGGGTAAGATTACAGGGAACGTGCTTGCTGGAAATCAGAACTCACTCGCATATCCAAGAACGCCCGAGGAGATTTTAAGGATTGTGTATGGTGGAGGTAATGAGCATGTTCCTGGGGGTTTCTATCCAAAGGGAGCCGATGGCCACATAGCTAAATCCAATGCACTTAGCAAATAATGCTGTTCTAGATGTTTTCTACTTCTAGATCATCAATAAAGAGGATTTCACTTGCTTTATCATGGAGTCATCCTTCTCCTCCCAGCTCATCTATCGTTCTATCACAATATAGGTGTTTTTAGTTACTATTCCACAGATAGAAGTCTCTTCTGTATTCTATTTCATCAATCAATGAAACGGTTTCCCTTTCCTATTTATAAAAATAAAATTCCAATAGTAATCACGATTT

Coding sequence (CDS)

ATGGGAGAATATGGTATAAGCATTACCGCCGCAGTTGTCAGCTTCCTCATCATCCTCCATCTGCCAACTCATTGTAATGCAATTGTCAGAAAGGCAAATAATTCCATTCCCCAAGAAGATGTTGATCTTATAGAATTCGCACTGAATTTAGAGTATCTAGAAGCCGAACTCTTCTTATATGGTCCTCTGGGATATGGTTTGGATAAAGTTGCACCAAATCTAACCATGGGAGGGCCACCCCCCATTGGTGCTAAAATGGCTAACTTGGGTCCTTTCATCAAGGACATCATATTGCAATTTGGCTACCAGGAAGTTGGTCACTTGAGGGCAATAAAAAATAGAGTCGAAGGATTTCCAAGGCCATTGCTGGACTTGAGTTCAGCGACATTTGCCAAAGTGATGGACAAAGCATTTGATCGTCAGTTGAAACCACCTTTTGACCCTTATGCTAATGGCTTGAATTTCCTTCTCGCATCCTACCTTATTCCTTATGTTGGACTCACTGGGTATCTTGTTGCAGGACTTCTGGGTGTTGAATCGGGTCAAGATGCAGTAATCAGAACGCTACTTTATCAACGTGCAGCAGAAAAGGTTGAACCATATGGAGTGACAGTGGCAGAGTTCACGGAGCGCATTTCAGATCTGCGGAATAAATTAGGACGTGCAGGTATAAAAGATGAAGGCATTGTGGTACCCGAAAACGAGGGTGCTGAGGGTAAGATTACAGGGAACGTGCTTGCTGGAAATCAGAACTCACTCGCATATCCAAGAACGCCCGAGGAGATTTTAAGGATTGTGTATGGTGGAGGTAATGAGCATGTTCCTGGGGGTTTCTATCCAAAGGGAGCCGATGGCCACATAGCTAAATCCAATGCACTTAGCAAATAA

Protein sequence

MGEYGISITAAVVSFLIILHLPTHCNAIVRKANNSIPQEDVDLIEFALNLEYLEAELFLYGPLGYGLDKVAPNLTMGGPPPIGAKMANLGPFIKDIILQFGYQEVGHLRAIKNRVEGFPRPLLDLSSATFAKVMDKAFDRQLKPPFDPYANGLNFLLASYLIPYVGLTGYLVAGLLGVESGQDAVIRTLLYQRAAEKVEPYGVTVAEFTERISDLRNKLGRAGIKDEGIVVPENEGAEGKITGNVLAGNQNSLAYPRTPEEILRIVYGGGNEHVPGGFYPKGADGHIAKSNALSK

Homology

[Close]

BLAST of Lsi09G015080 vs. Swiss-Prot
Match: DRPE_CRAPL (Desiccation-related protein PCC13-62 OS=Craterostigma plantagineum PE=2 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 1.0e-87
Identity = 166/291 (57.04%), Postives = 204/291 (70.10%), Query Frame = 1


Query: 9   TAAVVSFLIILHLPTHCNAIVRKANNSIPQEDVDLIEFALNLEYLEAELFLYGPLGYGLD 68
           +AA+VSF + L + +   A      + IP+ DV L+EF LNLE LEAE F +   G G+D
Sbjct: 9   SAALVSFFLAL-ICSCSYAAWHHEKDDIPKSDVSLLEFPLNLELLEAEFFAWAAFGKGID 68

Query: 69  KVAPNLTMGGPPPIGAKMANLGPFIKDIILQFGYQEVGHLRAIKNRVEGFPRPLLDLSSA 128
           ++ P L  GGP PIG + ANL PFI+DII QF YQE GH+RAI++ VEGFPRPLLDLS+ 
Sbjct: 69  ELEPELAKGGPSPIGVQKANLSPFIRDIIAQFAYQEFGHVRAIQSSVEGFPRPLLDLSAK 128

Query: 129 TFAKVMDKAFDRQLKPPFDPYANGLNFLLASYLIPYVGLTGY--------------LVAG 188
           +FA VMD AF + LKPPFDPYAN +N+LLA Y++PYVGLTGY              LVAG
Sbjct: 129 SFATVMDSAFGKTLKPPFDPYANDINYLLACYVVPYVGLTGYVGANPKLESPVSRKLVAG 188

Query: 189 LLGVESGQDAVIRTLLYQRAAEKVEPYGVTVAEFTERISDLRNKLGRAGIKDEGIVVPEN 248
           LL VE+GQDA+IR LLY+RA +KVEPYG+TVAEFT +IS+LRNKLG  G+KD G++V   
Sbjct: 189 LLAVEAGQDAIIRALLYERATDKVEPYGITVAEFTNKISELRNKLGDKGVKDLGLIVEPE 248

Query: 249 EGAEGKITGNVLAGNQNSLAYPRTPEEILRIVYGGGNEHVPGGFYPKGADG 286
            GAEGKI+GNVLAG++NSLA+PRTPE  L           P  F PK   G
Sbjct: 249 LGAEGKISGNVLAGDKNSLAFPRTPERCLGSCTAAAMRPSPAAFIPKAPTG 298

[Close]

BLAST of Lsi09G015080 vs. TrEMBL
Match: A0A0A0KF49_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G324880 PE=4 SV=1)

HSP 1 Score: 511.1 bits (1315), Expect = 8.7e-142
Identity = 259/310 (83.55%), Postives = 272/310 (87.74%), Query Frame = 1


Query: 1   MGEYGISI-TAAVVSFLIILHLPTHCNAIVRKANNSIPQEDVDLIEFALNLEYLEAELFL 60
           MG YG+SI TAA VS+LIILHLP HCNAIVR+ NN IPQ D DL+EF LNLEYLEAE FL
Sbjct: 1   MGGYGMSIITAAAVSYLIILHLPIHCNAIVRRENNFIPQGDADLLEFPLNLEYLEAEFFL 60

Query: 61  YGPLGYGLDKVAPNLTMGGPPPIGAKMANLGPFIKDIILQFGYQEVGHLRAIKNRVEGFP 120
           YG LGYGLDKVAPNLTMGGPPPIGAK A L PFI+DIILQFGYQEVGHLRAIK  V+GFP
Sbjct: 61  YGSLGYGLDKVAPNLTMGGPPPIGAKRAKLDPFIRDIILQFGYQEVGHLRAIKTTVKGFP 120

Query: 121 RPLLDLSSATFAKVMDKAFDRQLKPPFDPYANGLNFLLASYLIPYVGLTGY--------- 180
           RPLLDLSSA+FAKVMDKAF RQLKP FDPYANGLNFLLASYL+PYVGLTGY         
Sbjct: 121 RPLLDLSSASFAKVMDKAFGRQLKPHFDPYANGLNFLLASYLVPYVGLTGYVGANPRLES 180

Query: 181 -----LVAGLLGVESGQDAVIRTLLYQRAAEKVEPYGVTVAEFTERISDLRNKLGRAGIK 240
                LVAGLLGVESGQDAVIR LLYQRAAEKVEPYGVTVAEFT+RISDLRNKLG AGIK
Sbjct: 181 AVAKKLVAGLLGVESGQDAVIRALLYQRAAEKVEPYGVTVAEFTDRISDLRNKLGHAGIK 240

Query: 241 DEGIVVPENEGAEGKITGNVLAGNQNSLAYPRTPEEILRIVYGGGNEHVPGGFYPKGADG 296
           DEG VVP+NEGAEGKITGNVLAG+Q+SLAYPRTP+EILRIVYGGGNEH PGGFYPKGADG
Sbjct: 241 DEGTVVPKNEGAEGKITGNVLAGDQDSLAYPRTPQEILRIVYGGGNEHAPGGFYPKGADG 300

[Close]

BLAST of Lsi09G015080 vs. TrEMBL
Match: A0A059B5K5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H04071 PE=4 SV=1)

HSP 1 Score: 401.7 bits (1031), Expect = 7.5e-109
Identity = 203/301 (67.44%), Postives = 240/301 (79.73%), Query Frame = 1


Query: 11  AVVSFLIILHL---PTHCNAIVRKANNSIPQEDVDLIEFALNLEYLEAELFLYGPLGYGL 70
           A+  FL++L L    ++C  +     + +P+ DVDL+EF LNLEY EAELFLY  LGYGL
Sbjct: 2   ALFFFLLLLLLLVPSSNCMDLESHYRHKVPRSDVDLLEFPLNLEYFEAELFLYASLGYGL 61

Query: 71  DKVAPNLTMGGPPPIGAKMANLGPFIKDIILQFGYQEVGHLRAIKNRVEGFPRPLLDLSS 130
           DKVAPNLTMGGP PIGA+ ANLGP IKDIILQF  QEVGHL+AIK  V+GFPRPLL+LS+
Sbjct: 62  DKVAPNLTMGGPSPIGARAANLGPLIKDIILQFALQEVGHLKAIKTTVKGFPRPLLNLSA 121

Query: 131 ATFAKVMDKAFDRQLKPPFDPYANGLNFLLASYLIPYVGLTGY--------------LVA 190
           A+FAKVMD AF   LKPPFDPYAN +NFLLASYL+PYVGLTGY              LVA
Sbjct: 122 ASFAKVMDNAFGHALKPPFDPYANEINFLLASYLVPYVGLTGYVGANPKLQGSVSKRLVA 181

Query: 191 GLLGVESGQDAVIRTLLYQRAAEKVEPYGVTVAEFTERISDLRNKLGRAGIKDEGIVVPE 250
           GLLGVESGQDAVIR LLY+RAA +V+PYG+ VAEF++R+S+LRNKLG  G+KDEG+VVP 
Sbjct: 182 GLLGVESGQDAVIRALLYERAAWEVKPYGINVAEFSDRMSELRNKLGHDGLKDEGLVVPL 241

Query: 251 NEGAEGKITGNVLAGNQNSLAYPRTPEEILRIVYGGGNEHVPGGFYPKGADGHIAKSNAL 295
           + GAEGKI GNVLAG++ S++Y RTPEEILRIVYG G+E VPGGFYPKG +GHIA+S+  
Sbjct: 242 HLGAEGKIKGNVLAGDKYSISYDRTPEEILRIVYGSGDESVPGGFYPKGGNGHIARSHLR 301

[Close]

BLAST of Lsi09G015080 vs. TrEMBL
Match: A0A067G9C6_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g037898mg PE=4 SV=1)

HSP 1 Score: 401.0 bits (1029), Expect = 1.3e-108
Identity = 195/270 (72.22%), Postives = 223/270 (82.59%), Query Frame = 1


Query: 36  IPQEDVDLIEFALNLEYLEAELFLYGPLGYGLDKVAPNLTMGGPPPIGAKMANLGPFIKD 95
           +PQ D+DL+EF LNLEYLEAE FL+G LGYGLDKVAPNLTMGGP PIG K ANL  F  D
Sbjct: 14  LPQSDIDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTMGGPAPIGGKKANLDAFAND 73

Query: 96  IILQFGYQEVGHLRAIKNRVEGFPRPLLDLSSATFAKVMDKAFDRQLKPPFDPYANGLNF 155
           ++LQF +QEVGHL+AIK  V+GFPRPLLDLS+ TFAKVMDKAF + L PPFDPYAN +N+
Sbjct: 74  VVLQFAWQEVGHLKAIKKTVKGFPRPLLDLSAGTFAKVMDKAFGKPLNPPFDPYANSINY 133

Query: 156 LLASYLIPYVGLTGY--------------LVAGLLGVESGQDAVIRTLLYQRAAEKVEPY 215
           L+ASYLIPYVGLTGY              LVAGLLGVESGQDAVIR LLY++A E V+PY
Sbjct: 134 LIASYLIPYVGLTGYVGANPRLQDATSKRLVAGLLGVESGQDAVIRALLYEKANETVKPY 193

Query: 216 GVTVAEFTERISDLRNKLGRAGIKDEGIVVPENEGAEGKITGNVLAGNQNSLAYPRTPEE 275
           GVTVAEFT ++S LRN LGR GIKDEG+VVPE +GAEGKI GNVLAG++NS+A+ R PEE
Sbjct: 194 GVTVAEFTNKMSQLRNVLGRTGIKDEGLVVPELQGAEGKIAGNVLAGDENSVAFDRNPEE 253

Query: 276 ILRIVYGGGNEHVPGGFYPKGADGHIAKSN 292
           IL IVYG G+EHVPGGFYPKGADG IA+S+
Sbjct: 254 ILSIVYGSGDEHVPGGFYPKGADGRIARSH 283

[Close]

BLAST of Lsi09G015080 vs. TrEMBL
Match: V4RZB9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006860mg PE=4 SV=1)

HSP 1 Score: 400.6 bits (1028), Expect = 1.7e-108
Identity = 194/273 (71.06%), Postives = 224/273 (82.05%), Query Frame = 1


Query: 33  NNSIPQEDVDLIEFALNLEYLEAELFLYGPLGYGLDKVAPNLTMGGPPPIGAKMANLGPF 92
           N  +PQ DVDL+EF LNLEYLEAE FL+G LGYGLDKVAPNLT+GGP P+GAK ANL P 
Sbjct: 25  NYFLPQSDVDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTLGGPAPLGAKKANLDPL 84

Query: 93  IKDIILQFGYQEVGHLRAIKNRVEGFPRPLLDLSSATFAKVMDKAFDRQLKPPFDPYANG 152
            KD++LQF +QEVGHL+AIK  V+GFPRPLLDLS+ +FAKV+DKAF + L PPFDPYAN 
Sbjct: 85  TKDLVLQFAWQEVGHLKAIKKTVKGFPRPLLDLSAGSFAKVIDKAFGKPLNPPFDPYANS 144

Query: 153 LNFLLASYLIPYVGLTGY--------------LVAGLLGVESGQDAVIRTLLYQRAAEKV 212
           +N+L+ASYLIPYVGLTGY              LVAGLLGVESGQDAVIR  LY++A EKV
Sbjct: 145 INYLIASYLIPYVGLTGYVGANPNLQNAISKRLVAGLLGVESGQDAVIRAFLYEKANEKV 204

Query: 213 EPYGVTVAEFTERISDLRNKLGRAGIKDEGIVVPENEGAEGKITGNVLAGNQNSLAYPRT 272
            PYG+ VAEFT +IS LRN LGR+G+KDEG+VVP+  GAEGKI GNVLAG++NS+AY RT
Sbjct: 205 HPYGIRVAEFTNKISQLRNTLGRSGLKDEGLVVPKALGAEGKIEGNVLAGDENSVAYDRT 264

Query: 273 PEEILRIVYGGGNEHVPGGFYPKGADGHIAKSN 292
           PEE+LRIVYG GNE VPGGFYPKG DG IAKS+
Sbjct: 265 PEEVLRIVYGSGNERVPGGFYPKGGDGRIAKSH 297

[Close]

BLAST of Lsi09G015080 vs. TrEMBL
Match: A0A067G4J1_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g036999mg PE=4 SV=1)

HSP 1 Score: 400.2 bits (1027), Expect = 2.2e-108
Identity = 194/270 (71.85%), Postives = 223/270 (82.59%), Query Frame = 1


Query: 36  IPQEDVDLIEFALNLEYLEAELFLYGPLGYGLDKVAPNLTMGGPPPIGAKMANLGPFIKD 95
           +PQ DVDL+EF LNLEYLEAE FL+G LGYGLDKVAPNLT+GGP P+GAK ANL P  KD
Sbjct: 1   LPQSDVDLLEFPLNLEYLEAEFFLFGSLGYGLDKVAPNLTLGGPAPLGAKKANLDPLTKD 60

Query: 96  IILQFGYQEVGHLRAIKNRVEGFPRPLLDLSSATFAKVMDKAFDRQLKPPFDPYANGLNF 155
           ++LQF +QEVGHL+AIK  V+GFPRPLLDLS+ +FAKV+DKAF + L PPFDPYAN +N+
Sbjct: 61  LVLQFAWQEVGHLKAIKKTVKGFPRPLLDLSAGSFAKVIDKAFGKPLNPPFDPYANSINY 120

Query: 156 LLASYLIPYVGLTGY--------------LVAGLLGVESGQDAVIRTLLYQRAAEKVEPY 215
           L+ASYLIPYVGLTGY              LVAGLLGVESGQDAVIR  LY++A EKV PY
Sbjct: 121 LIASYLIPYVGLTGYVGANPNLQNAISKRLVAGLLGVESGQDAVIRAFLYEKANEKVHPY 180

Query: 216 GVTVAEFTERISDLRNKLGRAGIKDEGIVVPENEGAEGKITGNVLAGNQNSLAYPRTPEE 275
           G+ VAEFT +IS LRN LGR+GIKDEG+VVP+  GAEGKI GNVLAG++NS+AY RTPEE
Sbjct: 181 GIRVAEFTNKISQLRNTLGRSGIKDEGLVVPKALGAEGKIEGNVLAGDENSVAYDRTPEE 240

Query: 276 ILRIVYGGGNEHVPGGFYPKGADGHIAKSN 292
           +LRIVYG GNE VPGGFYPKG DG IAKS+
Sbjct: 241 VLRIVYGSGNERVPGGFYPKGGDGRIAKSH 270

[Close]

BLAST of Lsi09G015080 vs. TAIR10
Match: AT1G47980.1 (AT1G47980.1 unknown protein)

HSP 1 Score: 375.2 bits (962), Expect = 3.8e-104
Identity = 188/274 (68.61%), Postives = 215/274 (78.47%), Query Frame = 1


Query: 31  KANNSIPQEDVDLIEFALNLEYLEAELFLYGPLGYGLDKVAPNLTMGGPPPIGAKMANLG 90
           +A  +   +D  L+EF LNLEYLEAE FL+G LG GLDKVAPNLTMGGP PIGA+ ANL 
Sbjct: 34  QATTNCTDQDRKLLEFPLNLEYLEAEFFLFGALGLGLDKVAPNLTMGGPSPIGAQKANLD 93

Query: 91  PFIKDIILQFGYQEVGHLRAIKNRVEGFPRPLLDLSSATFAKVMDKAFDRQLKPPFDPYA 150
           P  +DIILQF +QEVGHLRAIK  V+GF RP LDLS   FAKVMDKAF  +  PPF+PYA
Sbjct: 94  PLTRDIILQFAWQEVGHLRAIKKTVKGFARPQLDLSKKAFAKVMDKAFGVKFVPPFNPYA 153

Query: 151 NGLNFLLASYLIPYVGLTGY--------------LVAGLLGVESGQDAVIRTLLYQRAAE 210
           N  N+L+ASYL+PYVGLTGY              LVAGLLGVESGQDAVIR +LY RAA 
Sbjct: 154 NSYNYLIASYLVPYVGLTGYVGANPKLQCPASRKLVAGLLGVESGQDAVIRGMLYARAAH 213

Query: 211 KVEPYGVTVAEFTERISDLRNKLGRAGIKDEGIVVPENEGAEGKITGNVLAGNQNSLAYP 270
            V PYGVTVA FT++ISDLRNKLG+AG+KDEG++VP+  GAEG++ GNVL GN+ SL++ 
Sbjct: 214 IVYPYGVTVAAFTDKISDLRNKLGKAGVKDEGLIVPKFMGAEGQVIGNVLVGNELSLSFD 273

Query: 271 RTPEEILRIVYGGGNEHVPGGFYPKGADGHIAKS 291
           RTPEEILRIVYG GNE VPGGFYPKGADG IAKS
Sbjct: 274 RTPEEILRIVYGSGNESVPGGFYPKGADGEIAKS 307

[Close]

BLAST of Lsi09G015080 vs. TAIR10
Match: AT3G62730.1 (AT3G62730.1 unknown protein)

HSP 1 Score: 307.0 bits (785), Expect = 1.3e-83
Identity = 160/272 (58.82%), Postives = 190/272 (69.85%), Query Frame = 1


Query: 33  NNSIPQEDVDLIEFALNLEYLEAELFLYGPLGYGLDKVAPNLTMGGPPPIGAKMANLGPF 92
           + +I   DVD + FA+NLE+ EAE FL G  G GLD     L  GGPPPIGAK ANL P 
Sbjct: 27  SGNISASDVDRVHFAMNLEFTEAEFFLKGATGKGLDAYNATLAKGGPPPIGAKKANLDPI 86

Query: 93  IKDIILQFGYQEVGHLRAIKNRVEGFPRPLLDLSSATFAKVMDKAFDRQLKPPFDPYANG 152
              II +FGYQE+GHLRAI +   G PRPL++L+   FA  MD+A  R+  P FDPYAN 
Sbjct: 87  TNRIIEEFGYQEIGHLRAITDMTGGIPRPLINLTRENFAVFMDRAVGRKSNPRFDPYANS 146

Query: 153 LNFLLASYLIPYVGLTGY--------------LVAGLLGVESGQDAVIRTLLYQRAAEKV 212
           LN+LLASY IPYVGLTGY              LVAGLLGVESGQDAVIRTLLY+R  EKV
Sbjct: 147 LNYLLASYYIPYVGLTGYVGTIPYLVYFNIKKLVAGLLGVESGQDAVIRTLLYERQNEKV 206

Query: 213 EPY-GVTVAEFTERISDLRNKLGRAGIKDEGIVVPENEGAEGKITGNVLAGNQNSLAYPR 272
           E Y GVTVAE T  IS+LRN+LG  GIKDEG+ VP   GAE + T N+L+ +  SL+Y R
Sbjct: 207 EEYGGVTVAELTNEISNLRNELGMCGIKDEGLCVPLWLGAENRTTSNILSADPYSLSYDR 266

Query: 273 TPEEILRIVYGGGNEHVPGGFYPKGADGHIAK 290
           T +EILR++YG G+EH PGGF+P GA+G IA+
Sbjct: 267 TAQEILRVMYGTGDEHRPGGFWPCGANGRIAR 298

[Close]

BLAST of Lsi09G015080 vs. NCBI nr
Match: gi|449462134|ref|XP_004148796.1| (PREDICTED: desiccation-related protein PCC13-62-like [Cucumis sativus])

HSP 1 Score: 511.1 bits (1315), Expect = 1.3e-141
Identity = 259/310 (83.55%), Postives = 272/310 (87.74%), Query Frame = 1


Query: 1   MGEYGISI-TAAVVSFLIILHLPTHCNAIVRKANNSIPQEDVDLIEFALNLEYLEAELFL 60
           MG YG+SI TAA VS+LIILHLP HCNAIVR+ NN IPQ D DL+EF LNLEYLEAE FL
Sbjct: 1   MGGYGMSIITAAAVSYLIILHLPIHCNAIVRRENNFIPQGDADLLEFPLNLEYLEAEFFL 60

Query: 61  YGPLGYGLDKVAPNLTMGGPPPIGAKMANLGPFIKDIILQFGYQEVGHLRAIKNRVEGFP 120
           YG LGYGLDKVAPNLTMGGPPPIGAK A L PFI+DIILQFGYQEVGHLRAIK  V+GFP
Sbjct: 61  YGSLGYGLDKVAPNLTMGGPPPIGAKRAKLDPFIRDIILQFGYQEVGHLRAIKTTVKGFP 120

Query: 121 RPLLDLSSATFAKVMDKAFDRQLKPPFDPYANGLNFLLASYLIPYVGLTGY--------- 180
           RPLLDLSSA+FAKVMDKAF RQLKP FDPYANGLNFLLASYL+PYVGLTGY         
Sbjct: 121 RPLLDLSSASFAKVMDKAFGRQLKPHFDPYANGLNFLLASYLVPYVGLTGYVGANPRLES 180

Query: 181 -----LVAGLLGVESGQDAVIRTLLYQRAAEKVEPYGVTVAEFTERISDLRNKLGRAGIK 240
                LVAGLLGVESGQDAVIR LLYQRAAEKVEPYGVTVAEFT+RISDLRNKLG AGIK
Sbjct: 181 AVAKKLVAGLLGVESGQDAVIRALLYQRAAEKVEPYGVTVAEFTDRISDLRNKLGHAGIK 240

Query: 241 DEGIVVPENEGAEGKITGNVLAGNQNSLAYPRTPEEILRIVYGGGNEHVPGGFYPKGADG 296
           DEG VVP+NEGAEGKITGNVLAG+Q+SLAYPRTP+EILRIVYGGGNEH PGGFYPKGADG
Sbjct: 241 DEGTVVPKNEGAEGKITGNVLAGDQDSLAYPRTPQEILRIVYGGGNEHAPGGFYPKGADG 300

[Close]

BLAST of Lsi09G015080 vs. NCBI nr
Match: gi|659116909|ref|XP_008458324.1| (PREDICTED: desiccation-related protein PCC13-62-like [Cucumis melo])

HSP 1 Score: 509.6 bits (1311), Expect = 3.6e-141
Identity = 259/310 (83.55%), Postives = 272/310 (87.74%), Query Frame = 1


Query: 1   MGEYGISI-TAAVVSFLIILHLPTHCNAIVRKANNSIPQEDVDLIEFALNLEYLEAELFL 60
           MGEY +SI TAA VS+LIILHLP HCNAIVR  NN IPQ DVDL+EF LNLEYLEAE FL
Sbjct: 1   MGEYDMSIITAAAVSYLIILHLPIHCNAIVRGENNFIPQGDVDLLEFPLNLEYLEAEFFL 60

Query: 61  YGPLGYGLDKVAPNLTMGGPPPIGAKMANLGPFIKDIILQFGYQEVGHLRAIKNRVEGFP 120
           YG LGYGLDKVAPNLTMGGPPPIGAK A L PFI+DIILQFGYQEVGH+RAIKN V+GFP
Sbjct: 61  YGSLGYGLDKVAPNLTMGGPPPIGAKRAKLDPFIRDIILQFGYQEVGHVRAIKNTVKGFP 120

Query: 121 RPLLDLSSATFAKVMDKAFDRQLKPPFDPYANGLNFLLASYLIPYVGLTGY--------- 180
           RPLLDLSSA+FAKVMDKAF  QL+PPFDPYAN LNFLLASYLIPYVGLTGY         
Sbjct: 121 RPLLDLSSASFAKVMDKAFGHQLRPPFDPYANALNFLLASYLIPYVGLTGYVGANPRLES 180

Query: 181 -----LVAGLLGVESGQDAVIRTLLYQRAAEKVEPYGVTVAEFTERISDLRNKLGRAGIK 240
                LVAGLLGVESGQDAVIR LLYQRAAEKVEPYGVTVA FT RISDLRNKLGRAGIK
Sbjct: 181 AVAKKLVAGLLGVESGQDAVIRALLYQRAAEKVEPYGVTVAVFTHRISDLRNKLGRAGIK 240

Query: 241 DEGIVVPENEGAEGKITGNVLAGNQNSLAYPRTPEEILRIVYGGGNEHVPGGFYPKGADG 296
           DEGIVVP+NEGAEGKITGNVLAG+++SLAYPRTP+EILRIVYGGGNEH PGGFYPKGADG
Sbjct: 241 DEGIVVPKNEGAEGKITGNVLAGDKDSLAYPRTPQEILRIVYGGGNEHAPGGFYPKGADG 300

[Close]

BLAST of Lsi09G015080 vs. NCBI nr
Match: gi|702456997|ref|XP_010027142.1| (PREDICTED: desiccation-related protein PCC13-62-like [Eucalyptus grandis])

HSP 1 Score: 404.1 bits (1037), Expect = 2.2e-109
Identity = 203/304 (66.78%), Postives = 243/304 (79.93%), Query Frame = 1


Query: 6   ISITAAVVSFLIILHLPT-HCNAIVRKANNSIPQEDVDLIEFALNLEYLEAELFLYGPLG 65
           I+  +  + FL+ L +P+ +C  +     + +P+ DVDL+EF LNLEY EAELFLY  LG
Sbjct: 7   IATASMALFFLLFLLVPSSNCMDLESHYRHKVPRRDVDLLEFPLNLEYFEAELFLYASLG 66

Query: 66  YGLDKVAPNLTMGGPPPIGAKMANLGPFIKDIILQFGYQEVGHLRAIKNRVEGFPRPLLD 125
           YGLDKVAPNLTMGGP PIGA+ ANLGP IKDIILQF  QEVGHL+AIK  V+GFPRPLL+
Sbjct: 67  YGLDKVAPNLTMGGPSPIGARAANLGPLIKDIILQFALQEVGHLKAIKTTVKGFPRPLLN 126

Query: 126 LSSATFAKVMDKAFDRQLKPPFDPYANGLNFLLASYLIPYVGLTGY-------------- 185
           LS+A+FAKVMD AF   LKPPFDPYAN +NFLLASYL+PYVGLTGY              
Sbjct: 127 LSAASFAKVMDNAFGHALKPPFDPYANEINFLLASYLVPYVGLTGYVGANPKLQGSVSKR 186

Query: 186 LVAGLLGVESGQDAVIRTLLYQRAAEKVEPYGVTVAEFTERISDLRNKLGRAGIKDEGIV 245
           LVAGLLGVESGQDAVIR LLY+RAA +V+PYG+T+AEF++R+S+LRNKLG  G+KDEG+V
Sbjct: 187 LVAGLLGVESGQDAVIRALLYERAAWEVKPYGITMAEFSDRMSELRNKLGHDGLKDEGLV 246

Query: 246 VPENEGAEGKITGNVLAGNQNSLAYPRTPEEILRIVYGGGNEHVPGGFYPKGADGHIAKS 295
           VP + GAEGKI GNVLAG++ S++Y RTPEEILRIVYG G+E VPGGFYPKG +GHIA+S
Sbjct: 247 VPLHLGAEGKIKGNVLAGDKYSVSYDRTPEEILRIVYGSGDESVPGGFYPKGGNGHIARS 306

[Close]

BLAST of Lsi09G015080 vs. NCBI nr
Match: gi|1009172471|ref|XP_015867289.1| (PREDICTED: desiccation-related protein PCC13-62-like [Ziziphus jujuba])

HSP 1 Score: 403.7 bits (1036), Expect = 2.8e-109
Identity = 201/298 (67.45%), Postives = 239/298 (80.20%), Query Frame = 1


Query: 9   TAAVVSFLIILHLP-THCNAIVRKANNSIPQEDVDLIEFALNLEYLEAELFLYGPLGYGL 68
           TA     +I+L LP ++   I+R     +P+ DVDL+EF LNLE+LEAE FLYG LGYGL
Sbjct: 9   TAIFALLIILLFLPNSYSFNILRDFAIKVPESDVDLLEFPLNLEFLEAEFFLYGSLGYGL 68

Query: 69  DKVAPNLTMGGPPPIGAKMANLGPFIKDIILQFGYQEVGHLRAIKNRVEGFPRPLLDLSS 128
           DKVAPNLT GGPPPIG K ANL  F +DIILQF  QEVGHLRAI++ V+GFPRPLLD+S+
Sbjct: 69  DKVAPNLTKGGPPPIGGKFANLDHFTRDIILQFALQEVGHLRAIQSTVKGFPRPLLDISA 128

Query: 129 ATFAKVMDKAFDRQLKPPFDPYANGLNFLLASYLIPYVGLTGY--------------LVA 188
            +FAKV+D A  R+L PPFDPY+N LN+LLASYL+PYVGLTGY              LVA
Sbjct: 129 TSFAKVIDSALGRKLNPPFDPYSNSLNYLLASYLVPYVGLTGYVGANPKLRGSASKRLVA 188

Query: 189 GLLGVESGQDAVIRTLLYQRAAEKVEPYGVTVAEFTERISDLRNKLGRAGIKDEGIVVPE 248
           GLLGVESGQDAVIR LLY+ A E+VEPYG+TVAEFT++IS LR+KLGR G+KDEG+VVP 
Sbjct: 189 GLLGVESGQDAVIRALLYEHALERVEPYGITVAEFTDQISKLRDKLGRDGVKDEGLVVPP 248

Query: 249 NEGAEGKITGNVLAGNQNSLAYPRTPEEILRIVYGGGNEHVPGGFYPKGADGHIAKSN 292
             GAEGKI+GNVLAG++NSLA+ RTPE+ILRIVYG GNEH+PGGFYPKGA+G IA+S+
Sbjct: 249 VRGAEGKISGNVLAGDKNSLAFDRTPEQILRIVYGSGNEHIPGGFYPKGANGRIARSH 306

[Close]

BLAST of Lsi09G015080 vs. NCBI nr
Match: gi|1009173477|ref|XP_015867833.1| (PREDICTED: desiccation-related protein PCC13-62-like [Ziziphus jujuba])

HSP 1 Score: 402.9 bits (1034), Expect = 4.8e-109
Identity = 200/298 (67.11%), Postives = 240/298 (80.54%), Query Frame = 1


Query: 9   TAAVVSFLIILHLP-THCNAIVRKANNSIPQEDVDLIEFALNLEYLEAELFLYGPLGYGL 68
           TA     +I+L LP ++   I+R     +P+ DVDL+EF LNLE+LEAE FLYG LGYGL
Sbjct: 9   TAIFALLIILLFLPNSYSFNILRDFAIKVPESDVDLLEFPLNLEFLEAEFFLYGSLGYGL 68

Query: 69  DKVAPNLTMGGPPPIGAKMANLGPFIKDIILQFGYQEVGHLRAIKNRVEGFPRPLLDLSS 128
           DKVAPNLT GGPPPIG K+ANL  F +DIILQF  QEVGHLRAI++ V+GFPRPLLD+S+
Sbjct: 69  DKVAPNLTKGGPPPIGGKIANLDHFTRDIILQFALQEVGHLRAIQSTVKGFPRPLLDISA 128

Query: 129 ATFAKVMDKAFDRQLKPPFDPYANGLNFLLASYLIPYVGLTGY--------------LVA 188
            +FAKV+D A  R+L PPFDPY+N LN+LLASYL+PYVGLTGY              LVA
Sbjct: 129 TSFAKVIDSALGRKLNPPFDPYSNSLNYLLASYLVPYVGLTGYVGANPKLRGSASKRLVA 188

Query: 189 GLLGVESGQDAVIRTLLYQRAAEKVEPYGVTVAEFTERISDLRNKLGRAGIKDEGIVVPE 248
           GLLGVESGQDAVIR LLY+ A ++VEPYG+TVAEFT++IS LR+KLGR G+KDEG+VVP 
Sbjct: 189 GLLGVESGQDAVIRALLYEHALQRVEPYGITVAEFTDQISKLRDKLGRDGVKDEGLVVPP 248

Query: 249 NEGAEGKITGNVLAGNQNSLAYPRTPEEILRIVYGGGNEHVPGGFYPKGADGHIAKSN 292
             GAEGKI+GNVLAG++NSLA+ RTPE+ILRIVYG GNEH+PGGFYPKGA+G IA+S+
Sbjct: 249 VRGAEGKISGNVLAGDKNSLAFDRTPEQILRIVYGSGNEHIPGGFYPKGANGRIARSH 306

The following BLAST results are available for this feature:

BLAST of Lsi09G015080 vs. Swiss-Prot


Match Name	E-value	Identity	Description
DRPE_CRAPL	1.0e-87	57.04	Desiccation-related protein PCC13-62 OS=Craterostigma plantagineum PE=2 SV=1	[more]

BLAST of Lsi09G015080 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KF49_CUCSA	8.7e-142	83.55	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G324880 PE=4 SV=1	[more]
A0A059B5K5_EUCGR	7.5e-109	67.44	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H04071 PE=4 SV=1	[more]
A0A067G9C6_CITSI	1.3e-108	72.22	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g037898mg PE=4 S...	[more]
V4RZB9_9ROSI	1.7e-108	71.06	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006860mg PE=4 SV=1	[more]
A0A067G4J1_CITSI	2.2e-108	71.85	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g036999mg PE=4 S...	[more]

BLAST of Lsi09G015080 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G47980.1	3.8e-104	68.61	unknown protein	[more]
AT3G62730.1	1.3e-83	58.82	unknown protein	[more]

BLAST of Lsi09G015080 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449462134\|ref\|XP_004148796.1\|	1.3e-141	83.55	PREDICTED: desiccation-related protein PCC13-62-like [Cucumis sativus]	[more]
gi\|659116909\|ref\|XP_008458324.1\|	3.6e-141	83.55	PREDICTED: desiccation-related protein PCC13-62-like [Cucumis melo]	[more]
gi\|702456997\|ref\|XP_010027142.1\|	2.2e-109	66.78	PREDICTED: desiccation-related protein PCC13-62-like [Eucalyptus grandis]	[more]
gi\|1009172471\|ref\|XP_015867289.1\|	2.8e-109	67.45	PREDICTED: desiccation-related protein PCC13-62-like [Ziziphus jujuba]	[more]
gi\|1009173477\|ref\|XP_015867833.1\|	4.8e-109	67.11	PREDICTED: desiccation-related protein PCC13-62-like [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G015080.1	Lsi09G015080.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31694	FAMILY NOT NAMED	coord: 5..290 score: 8.8E
None	No IPR available	PANTHER	PTHR31694:SF4	SUBFAMILY NOT NAMED	coord: 5..290 score: 8.8E
None	No IPR available	PFAM	PF13668	Ferritin_2	coord: 40..173 score: 5.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi09G015080	Csa6G324880	Cucumber (Chinese Long) v2	culsiB405
Lsi09G015080	CSPI06G17660	Wild cucumber (PI 183967)	cpilsiB407
Lsi09G015080	Cucsa.247000	Cucumber (Gy14) v1	cgylsiB405
Lsi09G015080	CmaCh17G003820	Cucurbita maxima (Rimu)	cmalsiB331
Lsi09G015080	CmoCh17G003710	Cucurbita moschata (Rifu)	cmolsiB320
Lsi09G015080	Cla009229	Watermelon (97103) v1	lsiwmB040
Lsi09G015080	MELO3C021256	Melon (DHL92) v3.5.1	lsimeB017
Lsi09G015080	ClCG06G004430	Watermelon (Charleston Gray)	lsiwcgB029
Lsi09G015080	MELO3C021256.2	Melon (DHL92) v3.6.1	lsimedB019
Lsi09G015080	Cla97C06G113860	Watermelon (97103) v2	lsiwmbB026
Lsi09G015080	Bhi12G001742	Wax gourd	lsiwgoB012
Lsi09G015080	Cp4.1LG12g03400	Cucurbita pepo (Zucchini)	cpelsiB101
Lsi09G015080	Carg05559	Silver-seed gourd	carlsiB061
Lsi09G015080	CsaV3_6G028450	Cucumber (Chinese Long) v3	cuclsiB427

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi09G015080	Bottle gourd (USVL1VR-Ls)	lsilsiB002
Lsi09G015080	Cucumber (Gy14) v1	cgylsiB412
Lsi09G015080	Cucurbita maxima (Rimu)	cmalsiB225
Lsi09G015080	Cucurbita maxima (Rimu)	cmalsiB741
Lsi09G015080	Cucurbita maxima (Rimu)	cmalsiB811
Lsi09G015080	Cucurbita moschata (Rifu)	cmolsiB213
Lsi09G015080	Cucurbita moschata (Rifu)	cmolsiB797
Lsi09G015080	Cucurbita pepo (Zucchini)	cpelsiB247
Lsi09G015080	Cucurbita pepo (Zucchini)	cpelsiB484
Lsi09G015080	Cucurbita pepo (Zucchini)	cpelsiB697
Lsi09G015080	Wild cucumber (PI 183967)	cpilsiB149
Lsi09G015080	Cucumber (Chinese Long) v2	culsiB150
Lsi09G015080	Melon (DHL92) v3.5.1	lsimeB029
Lsi09G015080	Watermelon (97103) v1	lsiwmB017
Lsi09G015080	Cucumber (Gy14) v2	cgyblsiB136
Lsi09G015080	Cucumber (Gy14) v2	cgyblsiB369
Lsi09G015080	Melon (DHL92) v3.6.1	lsimedB032
Lsi09G015080	Silver-seed gourd	carlsiB252
Lsi09G015080	Silver-seed gourd	carlsiB641
Lsi09G015080	Cucumber (Chinese Long) v3	cuclsiB163
Lsi09G015080	Watermelon (97103) v2	lsiwmbB011
Lsi09G015080	Watermelon (97103) v2	lsiwmbB015
Lsi09G015080	Wax gourd	lsiwgoB041