Lsi09G014360 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi09G014360
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Condensin-2 complex subunit D3
Location	chr09 : 22352843 .. 22354390 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGAAGCCATTTCTCGAATCCTCACAGAGCTCGAAGAAGTTCGCCATTTCCACGACACTACAACTCTCCATTCCCAACCTCCGCCGCCGCTCTCCGACTCCGCTCTCTTCGACCTTCAAAGCTTGTTAGACAACTCAATCGGTACCGATGAACAACAACCAATTGATTGCCTCTACGAGGACCTCTCGGCCAAATCCCTCTCTCCGTCCTCTCTTACCCGCGCTATTGCCTCCGCCATGGATGATTCTTCCACTCGCGTTTCGATTTTAGCCTCTAGAGTCTATCTCTCCCTTCTTCTGGCCCCAAATGCACCGGTCTTCACGCTGTTCAATCCGATGGATTTTCTCTCCTTTCTCAGGTCTATGAGGCGACTCTTGAAGCAGCGACCACAGGCTCAACCGGACCAGGATGATTCTAATAAGGAGTCTAATGCTCCCAAACGGAAGAGGAAAGCCGCTGTTAAGGGTAAGGGTTTGGGGAATTGTGCGCTGAGGAAGAGTTTTAGTGGCAGATATGACGATGGTGAATTCGATGCAAGAGTATTGTATCCTGTGCTTGAGAGGTTAGAGATTTTAATGAGTTTGATTCATTTGGATCGATTTCCGGATAGTTTGAAATCTTTGATTGAAACTGTAAGTGATATTCCAGTTTTGGCACTTGAAGTATGCACTAATTTAAGTATCTATAGTAAGTTTACTAATTTATGTTCTCGGATTTTGAGTGCTACATTGCGTCCTGAGCATGGGGATCTATCGAGTACTACCGTTGAGGTGATTAAGTCTCTGTCACCATTGATTCTTAATCATAAAGATCAGGCGCGAGCATTTGCGCTAGGTTTTGTGACTGTTCAAATAGCGAATGTAGCAAAGGAATCAGATGGTGTTAAGAGTGCTCTGGTGAATCTTCCAAGGTATTTGGTTCAGAAGGCGCCTGAGAAATCCGAGCCCCGTAGTTTAGCAGTTGATTCAATAATGGAGGTTGTTAAAGTGATGGAATTCCCCGATCAAATTGGGTTTGTGGATTATGTAGTGAAGATGACCCGAGGAAAGTCTAATCTTAGGCTGTTAGCGGTTGATCTCATTTCAATGCTGATAACGTCCTTGAGTGATCCAATGGCCATTGATTCGGAAAGCGAACTAAAGGATTCGTGGGGATTTGGGTGCTTGGTGGCATTAGTTCAACGTTGTTCGGATGCCAGTGCTCCAATTCGTGCTCGAGCACTTACCAACTTAGCTCAGCTTGTGGTGTTCTTGTCTGAGAATGACAAGAATAAGGCCTTATTGAAGGAAGTGTTGGGGTCTGGTGACGAACATTGCAAAAAGAATGGAGATGAAATTCATGCTCTTTTGCGAAAAAGGTGTGTGGATGAGAAGGCGGCAGTTAGGAAGGCTGCATTATTTCTGGTTACCAAGTGTACAACTCTCCTTGGTGGAGCAATGGATGGAGATATGCTGAAGACGGTGGGAATTGCTTGTTCTGACCCACTTGTTAGCATACGGAAAGCTGCAATGTCGGCTCTCTCAGAGGTAAATTCTTATGTCTAA

mRNA sequence

ATGGAGGAAGCCATTTCTCGAATCCTCACAGAGCTCGAAGAAGTTCGCCATTTCCACGACACTACAACTCTCCATTCCCAACCTCCGCCGCCGCTCTCCGACTCCGCTCTCTTCGACCTTCAAAGCTTGTTAGACAACTCAATCGGTACCGATGAACAACAACCAATTGATTGCCTCTACGAGGACCTCTCGGCCAAATCCCTCTCTCCGTCCTCTCTTACCCGCGCTATTGCCTCCGCCATGGATGATTCTTCCACTCGCGTTTCGATTTTAGCCTCTAGAGTCTATCTCTCCCTTCTTCTGGCCCCAAATGCACCGGTCTTCACGCTGTTCAATCCGATGGATTTTCTCTCCTTTCTCAGGTCTATGAGGCGACTCTTGAAGCAGCGACCACAGGCTCAACCGGACCAGGATGATTCTAATAAGGAGTCTAATGCTCCCAAACGGAAGAGGAAAGCCGCTGTTAAGGGTAAGGGTTTGGGGAATTGTGCGCTGAGGAAGAGTTTTAGTGGCAGATATGACGATGGTGAATTCGATGCAAGAGTATTGTATCCTGTGCTTGAGAGGTTAGAGATTTTAATGAGTTTGATTCATTTGGATCGATTTCCGGATAGTTTGAAATCTTTGATTGAAACTGTAAGTGATATTCCAGTTTTGGCACTTGAAGTATGCACTAATTTAAGTATCTATAGTAAGTTTACTAATTTATGTTCTCGGATTTTGAGTGCTACATTGCGTCCTGAGCATGGGGATCTATCGAGTACTACCGTTGAGGTGATTAAGTCTCTGTCACCATTGATTCTTAATCATAAAGATCAGGCGCGAGCATTTGCGCTAGGTTTTGTGACTGTTCAAATAGCGAATGTAGCAAAGGAATCAGATGGTGTTAAGAGTGCTCTGGTGAATCTTCCAAGGTATTTGGTTCAGAAGGCGCCTGAGAAATCCGAGCCCCGTAGTTTAGCAGTTGATTCAATAATGGAGGTTGTTAAAGTGATGGAATTCCCCGATCAAATTGGGTTTGTGGATTATGTAGTGAAGATGACCCGAGGAAAGTCTAATCTTAGGCTGTTAGCGGTTGATCTCATTTCAATGCTGATAACGTCCTTGAGTGATCCAATGGCCATTGATTCGGAAAGCGAACTAAAGGATTCGTGGGGATTTGGGTGCTTGGTGGCATTAGTTCAACGTTGTTCGGATGCCAGTGCTCCAATTCGTGCTCGAGCACTTACCAACTTAGCTCAGCTTGTGGTGTTCTTGTCTGAGAATGACAAGAATAAGGCCTTATTGAAGGAAGTGTTGGGGTCTGGTGACGAACATTGCAAAAAGAATGGAGATGAAATTCATGCTCTTTTGCGAAAAAGGTGTGTGGATGAGAAGGCGGCAGTTAGGAAGGCTGCATTATTTCTGGTTACCAAGTGTACAACTCTCCTTGGTGGAGCAATGGATGGAGATATGCTGAAGACGGTGGGAATTGCTTGTTCTGACCCACTTGTTAGCATACGGAAAGCTGCAATGTCGGCTCTCTCAGAGGTAAATTCTTATGTCTAA

Coding sequence (CDS)

ATGGAGGAAGCCATTTCTCGAATCCTCACAGAGCTCGAAGAAGTTCGCCATTTCCACGACACTACAACTCTCCATTCCCAACCTCCGCCGCCGCTCTCCGACTCCGCTCTCTTCGACCTTCAAAGCTTGTTAGACAACTCAATCGGTACCGATGAACAACAACCAATTGATTGCCTCTACGAGGACCTCTCGGCCAAATCCCTCTCTCCGTCCTCTCTTACCCGCGCTATTGCCTCCGCCATGGATGATTCTTCCACTCGCGTTTCGATTTTAGCCTCTAGAGTCTATCTCTCCCTTCTTCTGGCCCCAAATGCACCGGTCTTCACGCTGTTCAATCCGATGGATTTTCTCTCCTTTCTCAGGTCTATGAGGCGACTCTTGAAGCAGCGACCACAGGCTCAACCGGACCAGGATGATTCTAATAAGGAGTCTAATGCTCCCAAACGGAAGAGGAAAGCCGCTGTTAAGGGTAAGGGTTTGGGGAATTGTGCGCTGAGGAAGAGTTTTAGTGGCAGATATGACGATGGTGAATTCGATGCAAGAGTATTGTATCCTGTGCTTGAGAGGTTAGAGATTTTAATGAGTTTGATTCATTTGGATCGATTTCCGGATAGTTTGAAATCTTTGATTGAAACTGTAAGTGATATTCCAGTTTTGGCACTTGAAGTATGCACTAATTTAAGTATCTATAGTAAGTTTACTAATTTATGTTCTCGGATTTTGAGTGCTACATTGCGTCCTGAGCATGGGGATCTATCGAGTACTACCGTTGAGGTGATTAAGTCTCTGTCACCATTGATTCTTAATCATAAAGATCAGGCGCGAGCATTTGCGCTAGGTTTTGTGACTGTTCAAATAGCGAATGTAGCAAAGGAATCAGATGGTGTTAAGAGTGCTCTGGTGAATCTTCCAAGGTATTTGGTTCAGAAGGCGCCTGAGAAATCCGAGCCCCGTAGTTTAGCAGTTGATTCAATAATGGAGGTTGTTAAAGTGATGGAATTCCCCGATCAAATTGGGTTTGTGGATTATGTAGTGAAGATGACCCGAGGAAAGTCTAATCTTAGGCTGTTAGCGGTTGATCTCATTTCAATGCTGATAACGTCCTTGAGTGATCCAATGGCCATTGATTCGGAAAGCGAACTAAAGGATTCGTGGGGATTTGGGTGCTTGGTGGCATTAGTTCAACGTTGTTCGGATGCCAGTGCTCCAATTCGTGCTCGAGCACTTACCAACTTAGCTCAGCTTGTGGTGTTCTTGTCTGAGAATGACAAGAATAAGGCCTTATTGAAGGAAGTGTTGGGGTCTGGTGACGAACATTGCAAAAAGAATGGAGATGAAATTCATGCTCTTTTGCGAAAAAGGTGTGTGGATGAGAAGGCGGCAGTTAGGAAGGCTGCATTATTTCTGGTTACCAAGTGTACAACTCTCCTTGGTGGAGCAATGGATGGAGATATGCTGAAGACGGTGGGAATTGCTTGTTCTGACCCACTTGTTAGCATACGGAAAGCTGCAATGTCGGCTCTCTCAGAGGTAAATTCTTATGTCTAA

Protein sequence

MEEAISRILTELEEVRHFHDTTTLHSQPPPPLSDSALFDLQSLLDNSIGTDEQQPIDCLYEDLSAKSLSPSSLTRAIASAMDDSSTRVSILASRVYLSLLLAPNAPVFTLFNPMDFLSFLRSMRRLLKQRPQAQPDQDDSNKESNAPKRKRKAAVKGKGLGNCALRKSFSGRYDDGEFDARVLYPVLERLEILMSLIHLDRFPDSLKSLIETVSDIPVLALEVCTNLSIYSKFTNLCSRILSATLRPEHGDLSSTTVEVIKSLSPLILNHKDQARAFALGFVTVQIANVAKESDGVKSALVNLPRYLVQKAPEKSEPRSLAVDSIMEVVKVMEFPDQIGFVDYVVKMTRGKSNLRLLAVDLISMLITSLSDPMAIDSESELKDSWGFGCLVALVQRCSDASAPIRARALTNLAQLVVFLSENDKNKALLKEVLGSGDEHCKKNGDEIHALLRKRCVDEKAAVRKAALFLVTKCTTLLGGAMDGDMLKTVGIACSDPLVSIRKAAMSALSEVNSYV

Homology

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BLAST of Lsi09G014360 vs. TrEMBL
Match: F6HE58_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g01160 PE=4 SV=1)

HSP 1 Score: 549.3 bits (1414), Expect = 5.0e-153
Identity = 302/512 (58.98%), Postives = 388/512 (75.78%), Query Frame = 1


Query: 1   MEEAISRILTELEEVRHFHDTTTLHSQPPP-PLSDSALFDLQSLLDNSIGTDEQQPIDCL 60
           MEE IS ILT+LE     H T +L    PP P+S S L DLQ+LLDN++ T++   ID L
Sbjct: 1   MEEVISGILTDLEA----HSTASLSDPNPPLPISQSTLSDLQTLLDNAMATEDSHHIDRL 60

Query: 61  YEDLSAKSLSPSSLTRAIASAMDDSSTRVSILASRVYLSLLLAPNAPVFTLFNPMDFLSF 120
           +EDLS+++LS SSL R +ASAMD S T +S+LASRVYLSLLL+ NAPVFTLF PM FLS 
Sbjct: 61  FEDLSSRNLSISSLIRPMASAMDSSPTDISLLASRVYLSLLLSLNAPVFTLFTPMAFLSL 120

Query: 121 LRSMRRLLKQRPQAQPDQDDSNKESNAPK-RKRKAAVKGKGLGNCALRKSFSGRYDDGEF 180
           LRS+R+  K R    P   +S++ S A   RKRK   + +G+ +           ++ EF
Sbjct: 121 LRSIRQCFKNRKMGPPRFGESSRGSYAAAYRKRKGGGRARGVRSRVREVDDGDGSEESEF 180

Query: 181 DARVLYPVLERLEILMSLIHLDRFPDSLKSLIETVSDIPVLALEVCTNLSIYSKFTNLCS 240
           D R+L+ VLERL++++ LIHLDRFPDSLKSL++TV++IP +ALE+C N + + K T+LCS
Sbjct: 181 DVRMLFSVLERLQLVLGLIHLDRFPDSLKSLVQTVAEIPAMALELCGNTASFDKLTHLCS 240

Query: 241 RILSATLRPEHGDLSSTTVEVIKSLSPLILNHKDQARAFALGFVTVQIANVAKESDGVKS 300
           R+L+  L  EHGD ++T  EV+KSLSPLIL  K +AR FALGF+  ++  +AKE DGVK 
Sbjct: 241 RVLTEVLSSEHGDQATTAAEVLKSLSPLILLAKSEARTFALGFMMNRMMGMAKEFDGVKK 300

Query: 301 ALVNLPRYLVQKAPEKSEPRSLAVDSIMEVVKVMEFPDQIGFVDYVVKMTRGKSNLRLLA 360
           A+VNLPRYL+QKAPEKSEPR+LAV+S+ME+VK MEF +QIGFV YVVKMT+GKS+ RLLA
Sbjct: 301 AIVNLPRYLLQKAPEKSEPRALAVESVMEIVKTMEFEEQIGFVMYVVKMTQGKSHFRLLA 360

Query: 361 VDLISMLITSLSDPMAIDSESELKDSWGFGCLVALVQRCSDASAPIRARALTNLAQLVVF 420
           VDL  +LI SL DP+ +++ +E+K+SWG  CL AL+QRCSDA+A IRARALTNLAQ+V F
Sbjct: 361 VDLFPLLIMSLRDPLGVNTGNEVKNSWGLNCLEALIQRCSDATAGIRARALTNLAQIVGF 420

Query: 421 LSENDKNKALLKEVLGSGDEHCKKNGDEIHALLRKRCVDEKAAVRKAALFLVTKCTTLLG 480
           LS +D+N+ +LKE +G G    +K    ++ LLRKRC+DEKAAVRKAAL L+TK T LLG
Sbjct: 421 LSTDDRNQVMLKEGMGFGSSSHQKLEGGVNDLLRKRCMDEKAAVRKAALLLITKLTGLLG 480

Query: 481 GAMDGDMLKTVGIACSDPLVSIRKAAMSALSE 511
           G   GD+LKT+G+ACSDPLVSIRKAA+SALSE
Sbjct: 481 GEFVGDLLKTMGMACSDPLVSIRKAAISALSE 508

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BLAST of Lsi09G014360 vs. TrEMBL
Match: M5XMD0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000283mg PE=4 SV=1)

HSP 1 Score: 531.6 bits (1368), Expect = 1.1e-147
Identity = 294/511 (57.53%), Postives = 386/511 (75.54%), Query Frame = 1


Query: 1   MEEAISRILTELEEVRHFHDTTTLHSQPPPPLSDSALFDLQSLLDNSIGTDEQQPIDCLY 60
           MEEAI+RI+TELEE+RH  + +   + P   +SDS L DLQ+LLDN++  D+ + +D L+
Sbjct: 1   MEEAITRIVTELEELRHSENPSDRQTLP---ISDSTLSDLQTLLDNALTDDDPELMDRLH 60

Query: 61  EDLSAKSLSPSSLTRAIASAMDDSSTRVSILASRVYLSLLLAPNAPVFTLFNPMDFLSFL 120
           ++LS+KSLS S+L R IASAMD   T +++ AS+VYLSLLL+PN+PV TLFNPMDFLS L
Sbjct: 61  DELSSKSLSLSNLVRPIASAMDLGRTHLALSASKVYLSLLLSPNSPVCTLFNPMDFLSLL 120

Query: 121 RSMRRLLKQRPQAQPDQDDSNKESNAPKRKRKAAVKGKGLGNCALRKSFSGRYD--DGEF 180
           +S+RR LK RP      + S+    A  +KRK  ++ +GL NCA + S     D  + EF
Sbjct: 121 QSIRRSLKHRPPG----ESSHGSHVAANKKRKGRIRNRGLKNCA-QSSHDEDCDGEESEF 180

Query: 181 DARVLYPVLERLEILMSLIHLDRFPDSLKSLIETVSDIPVLALEVCTNLSIYSKFTNLCS 240
           D RVL+ VLERLE++M LIHLDRFPDSLKSL++TV++IPV+ALEVC N   YS+ T+LCS
Sbjct: 181 DVRVLFTVLERLELVMGLIHLDRFPDSLKSLVQTVAEIPVMALEVCGNSGSYSRLTDLCS 240

Query: 241 RILSATLRPEHGDLSSTTVEVIKSLSPLILNHKDQARAFALGFVTVQIANVAKESDGVKS 300
           +IL     PEH D ++   EV+KSLSP+IL HK Q RAFALGFVT ++ + AK  D V+ 
Sbjct: 241 QILLKVFIPEHEDQANIAAEVLKSLSPMILQHKSQVRAFALGFVTNRMMSAAKTLDRVRK 300

Query: 301 ALVNLPRYLVQKAPEKSEPRSLAVDSIMEVVKVMEFPDQIGFVDYVVKMTRGKSNLRLLA 360
           A+VN PRYLVQKAPEKSEPR+LAV+SIME+V+ +EF DQ+GFV YVVKMT+GK++LRLLA
Sbjct: 301 AVVNFPRYLVQKAPEKSEPRALAVESIMEIVRFLEFEDQMGFVGYVVKMTQGKASLRLLA 360

Query: 361 VDLISMLITSLSDPMAIDSESELKDSWGFGCLVALVQRCSDASAPIRARALTNLAQLVVF 420
           VDLI +L+TSL D + ++SESE+ DS G  CL AL+QRCSD  A +R RAL+NL+QLV  
Sbjct: 361 VDLILVLVTSLRDTLGLNSESEVNDSLGLKCLEALIQRCSDVVAGVRGRALSNLSQLVGL 420

Query: 421 LSENDKNKALLKEVLGSGDEHCKKNGDEIHALLRKRCVDEKAAVRKAALFLVTKCTTLLG 480
           LS +D+ +A+L+EV+G G+   ++    ++ +L KRC+DEKA VRKAAL L+TK   +LG
Sbjct: 421 LSGDDRGQAVLEEVMGLGNASDQRPKGWMNEILIKRCMDEKAGVRKAALLLITKLIAILG 480

Query: 481 GAMDGDMLKTVGIACSDPLVSIRKAAMSALS 510
              DG +LKT+G+ACSDPLVSIRK A+SALS
Sbjct: 481 SDFDGGLLKTMGMACSDPLVSIRKTAISALS 503

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BLAST of Lsi09G014360 vs. TrEMBL
Match: A0A061EW85_THECC (Condensin-2 complex subunit D3 isoform 1 OS=Theobroma cacao GN=TCM_021222 PE=4 SV=1)

HSP 1 Score: 514.6 bits (1324), Expect = 1.4e-142
Identity = 291/517 (56.29%), Postives = 379/517 (73.31%), Query Frame = 1


Query: 1   MEEAISRILTELEEVRHFHDTTTLHSQPPPPLSDSALFDLQSLLDNSIGTDEQQPIDCLY 60
           MEE I+RILT+LEE+    +T +      P +S S L DLQSLL     T++   +   +
Sbjct: 364 MEETIARILTDLEEINQIPNTQS----QSPVISRSTLLDLQSLLS----TNDPDLLSQFF 423

Query: 61  EDLSAKSLSPSSLTRAIASAMDDS-STRVSILASRVYLSLLLAPNAPVFTLFNPMDFLSF 120
           +DL +KSLSPSSLT  ++  MD + S  +S+LAS+VYLSLLL+PN+PVFTLF P+ FLS 
Sbjct: 424 DDLPSKSLSPSSLTNLLSFTMDSAPSYHLSLLASKVYLSLLLSPNSPVFTLFTPISFLSL 483

Query: 121 LRSMRRLLKQRPQAQPDQDDSNKESNAPKRKRKAAVKGKGLGNCALRKSFSGRYDDGE-- 180
           LRS+RR  K RP AQP  D+S      P RKRK   KG+G  +       SG + +GE  
Sbjct: 484 LRSLRRAFKNRPLAQP--DESPPSQAPPNRKRKGGGKGRGKRS---NVRSSGGHSEGESE 543

Query: 181 ----FDARVLYPVLERLEILMSLIHLDRFPDSLKSLIETVSDIPVLALEVCTNLSIYSKF 240
                D + ++ V E L  ++ LIHLDRFPDSLKSLI+TV +IP++A+E   NL  +++ 
Sbjct: 544 ESDSLDIKDVFFVFEMLVSVLGLIHLDRFPDSLKSLIQTVGEIPLMAMEKFGNLGSFNRL 603

Query: 241 TNLCSRILSATLRPEHGDLSSTTVEVIKSLSPLILNHKDQARAFALGFVTVQIANVAKES 300
            +LCSR+LS  LR EHG++++   EV+K+LSPLIL  K QAR+FALGFVT  +  +  ES
Sbjct: 604 MHLCSRVLSEVLRSEHGEIANIAAEVLKALSPLILMVKSQARSFALGFVTDTMIELGNES 663

Query: 301 DGVKSALVNLPRYLVQKAPEKSEPRSLAVDSIMEVVKVMEFPDQIGFVDYVVKMTRGKSN 360
           DGVK A+V+ PRYL QKAPEK+EPR+LAVDSIMEVVKVMEF DQ+G+++YVVKMT+GK+N
Sbjct: 664 DGVKKAVVSFPRYLAQKAPEKAEPRALAVDSIMEVVKVMEFDDQMGYIEYVVKMTQGKAN 723

Query: 361 LRLLAVDLISMLITSLSDPMAIDSESELKDSWGFGCLVALVQRCSDASAPIRARALTNLA 420
            RLL VDLI+M++ SL+DP+ +DS+ E++D WG  CL AL+ RCSD SA IRARAL++LA
Sbjct: 724 FRLLGVDLIAMMLMSLTDPLGVDSDVEVRDPWGTRCLEALILRCSDLSAGIRARALSSLA 783

Query: 421 QLVVFLSENDKNKALLKEVLGSGDEHCKKNGDEIHALLRKRCVDEKAAVRKAALFLVTKC 480
           Q+V FLS +D+NK +LKEV+G G+   ++    ++ LLRKRC DEKAAVRKAAL LVTK 
Sbjct: 784 QVVGFLSGDDRNKGILKEVMGLGEGGKERPEGGMNDLLRKRCTDEKAAVRKAALLLVTKL 843

Query: 481 TTLLGGAMDGDMLKTVGIACSDPLVSIRKAAMSALSE 511
           T LLGG+ DG +LKT+G+ACSDPLVSIRKAA+SALSE
Sbjct: 844 TALLGGSFDGVVLKTMGMACSDPLVSIRKAAISALSE 867

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BLAST of Lsi09G014360 vs. TrEMBL
Match: W9R6X7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_023511 PE=4 SV=1)

HSP 1 Score: 505.8 bits (1301), Expect = 6.4e-140
Identity = 290/514 (56.42%), Postives = 368/514 (71.60%), Query Frame = 1


Query: 1   MEEAISRILTELEEVRHFHDTTTLHSQPPPPLSDSALFDLQSLLDNSIGTDEQQPIDCLY 60
           MEEAISRI+ ELEE+RH        SQ  P +SDS+L DLQ+LLDN++  D+ +PID LY
Sbjct: 1   MEEAISRIIAELEELRH--------SQLTPSISDSSLSDLQTLLDNTLD-DDSEPIDRLY 60

Query: 61  EDLSAKSLSPSSLTRAIASAMDDSSTRVSILASRVYLSLLLAPNAPVFTLFNPMDFLSFL 120
            +LSAKSLSPS+L   +ASAMD  S  +S++AS+VYLS+LL+PN+PV TLF PM FLS L
Sbjct: 61  AELSAKSLSPSNLVSPLASAMDSGSPNLSLVASKVYLSILLSPNSPVLTLFTPMAFLSLL 120

Query: 121 RSMRRLLKQRPQAQPDQDDSNKESNAPKRKRKAAVKGKGLGNCALRKSFSGRYD--DGEF 180
           RS+RR LK+RP +QP   +S++E  A  RKRK   +G+       R    G +D  D E 
Sbjct: 121 RSIRRCLKRRPPSQPRSGESSQEV-AANRKRKTGSRGRSSKKRG-RSRQEGDHDGEDSEL 180

Query: 181 DARVLYPVLERLEILMSLIHLDRFPDSLKSLIETVSDIPVLALEVCTNLSIYSKFTNLCS 240
           D RVL+ VLERLE++M LIHLDRFPDSLKSL++TV++IPV+A+EVCTN   Y++ T+ CS
Sbjct: 181 DTRVLFTVLERLELVMKLIHLDRFPDSLKSLVQTVAEIPVMAIEVCTNSGNYNRLTDFCS 240

Query: 241 RILSATLRPEHGDLSSTTVEVIKSLSPLILNHKDQARAFALGFVTVQIANVAKESDGVKS 300
           +IL   LRPEHGD ++T  EV+KSLSP+IL  K QAR FAL FVT+Q+ NVA  SDGVK 
Sbjct: 241 KILLEVLRPEHGDEANTAAEVLKSLSPMILQCKSQARIFALEFVTIQMTNVANRSDGVKK 300

Query: 301 ALVNLPRYLVQKAPEKSEPRSLAVDSIMEVVKVMEFPDQIGFVDYVVKMTRGKSNLRLLA 360
           A+VN PRYLV KAPEKSEPR+LAV+SIMEV+++MEF DQ+GFV+YV+KM++GKSNLRLLA
Sbjct: 301 AMVNYPRYLVVKAPEKSEPRALAVESIMEVIRIMEFEDQMGFVEYVMKMSQGKSNLRLLA 360

Query: 361 VDLISMLITSLSDPMAIDSESELKDSWGFGCLVALVQRCSDASAPIRARALTNLAQLVVF 420
            DLI ML+ SL  P+ +DSE  +KDSWG                               F
Sbjct: 361 TDLIPMLVMSLRGPLDLDSEDGVKDSWG-------------------------------F 420

Query: 421 LSENDKNKALLKEVLGSGDEHCKKNGDE--IHALLRKRCVDEKAAVRKAALFLVTKCTTL 480
           L+++ +++ +LKEVLG G      +GD+  ++ LLRKRC DEKAAVRK+AL LV   T L
Sbjct: 421 LTKDSRSQPVLKEVLGIG------SGDKGLVNELLRKRCTDEKAAVRKSALILVASLTGL 466

Query: 481 LGGAMDGDMLKTVGIACSDPLVSIRKAAMSALSE 511
            G    G +LKT+G+ACSDPLVSIRKAA+SALSE
Sbjct: 481 FGSGFHGALLKTMGMACSDPLVSIRKAAVSALSE 466

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BLAST of Lsi09G014360 vs. TrEMBL
Match: A0A0D2RPS6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G191000 PE=4 SV=1)

HSP 1 Score: 505.0 bits (1299), Expect = 1.1e-139
Identity = 286/515 (55.53%), Postives = 373/515 (72.43%), Query Frame = 1


Query: 1   MEEAISRILTELEEVRHFHDTTTLHSQPPPPLSDSALFDLQSLLDNSIGTDEQQPIDCLY 60
           MEE I+RILTELEE+    +T        P +S S L DL SLL     T++   +  L+
Sbjct: 1   MEETIARILTELEEINQIPNT----QNQTPLISRSTLLDLHSLLS----TNDPDLVSQLF 60

Query: 61  EDLSAKSLSPSSLTRAIASAMDDSSTRVSILASRVYLSLLLAPNAPVFTLFNPMDFLSFL 120
           +DL +KSLSPSSLT  ++  MD S+   SILAS+VYLSLLL+PN+PVFTLF P+ FLSFL
Sbjct: 61  DDLPSKSLSPSSLTNLLSFTMD-SAPSYSILASKVYLSLLLSPNSPVFTLFTPISFLSFL 120

Query: 121 RSMRRLLKQRPQAQPDQDDSNKESNAPKRKRKAAVKG-----KGLGNCALRKSFSGRYDD 180
           RS+RR  K  P AQP++   +      KRK    V+G     +G G+C+   S +     
Sbjct: 121 RSLRRAFKNCPSAQPEESPPSHAPPNRKRKGGGRVRGARGNVRGSGDCSEEASDT----- 180

Query: 181 GEFDARVLYPVLERLEILMSLIHLDRFPDSLKSLIETVSDIPVLALEVCTNLSIYSKFTN 240
             FD + ++ V E L  ++ LIHLDRFPDSLKSL++T  +IP++A+E   N S +++  +
Sbjct: 181 --FDMKQVFKVFEMLVSVLGLIHLDRFPDSLKSLVQTFGEIPLMAMEKLGNPSSFNRLMD 240

Query: 241 LCSRILSATLRPEHGDLSSTTVEVIKSLSPLILNHKDQARAFALGFVTVQIANVAKESDG 300
           LCSR+LS  LR EHG+L++TT EV+K+LSPLIL  K QAR+FALGFVT ++  +  ESDG
Sbjct: 241 LCSRVLSEVLRAEHGELANTTAEVLKALSPLILMVKSQARSFALGFVTKRMTELGNESDG 300

Query: 301 VKSALVNLPRYLVQKAPEKSEPRSLAVDSIMEVVKVMEFPDQIGFVDYVVKMTRGKSNLR 360
           VK A+VN PRYL QKAPEK+EPR+LAVDSIMEVVKVM+F DQIG++DYV+KMT+GK+NLR
Sbjct: 301 VKKAVVNFPRYLAQKAPEKAEPRALAVDSIMEVVKVMDFEDQIGYMDYVLKMTQGKANLR 360

Query: 361 LLAVDLISMLITSLSDPMAIDSESELKDSWGFGCLVALVQRCSDASAPIRARALTNLAQL 420
           LL VDLI+M++ SL DP  +DS+ + +D WG  CL AL+ RCSD SA IRARAL++LAQ+
Sbjct: 361 LLGVDLIAMMLMSLRDPFGVDSDVKTRDYWGTKCLEALITRCSDLSAGIRARALSSLAQV 420

Query: 421 VVFLSENDKNKALLKEVLGSGDEHCKKNGDEIHALLRKRCVDEKAAVRKAALFLVTKCTT 480
           V FLS +D+NK +LKEV+G  +   ++    ++ LL+ RC+D+KAAVRKAAL LVTK  +
Sbjct: 421 VGFLSSDDRNKGILKEVMGLSEGGEERPQCGMNDLLKNRCMDDKAAVRKAALLLVTKLIS 480

Query: 481 LLGGAMDGDMLKTVGIACSDPLVSIRKAAMSALSE 511
           LL G  DG +LKTVG+ACSDPLVSIRKAA+SALSE
Sbjct: 481 LLDGCFDGILLKTVGMACSDPLVSIRKAAISALSE 499

[Close]

BLAST of Lsi09G014360 vs. TAIR10
Match: AT4G15890.1 (AT4G15890.1 binding)

HSP 1 Score: 424.1 bits (1089), Expect = 1.2e-118
Identity = 245/481 (50.94%), Postives = 341/481 (70.89%), Query Frame = 1


Query: 39  DLQSLLDNSIGTDEQQPIDCLYEDLSAKSLSPSSLTRAIASAMDD--SSTRVSILASRVY 98
           DL+SLLD    TD+ + ++  Y  LS+ +   SS  R I++AMD    S R++ILAS  Y
Sbjct: 29  DLKSLLD----TDDDEILNRFYGSLSSMA---SSFLRCISAAMDSPVESGRLAILASDAY 88

Query: 99  LSLLLAPNAPVFTLFNPMDFLSFLRSMRRLLKQRPQAQPDQDDSNKESNAPKRKRKAAVK 158
           LSLLL+ N PVFT F+P+ FLS L S+RR LK+R       D + + SN+ + K     +
Sbjct: 89  LSLLLSTNCPVFTFFSPIAFLSLLGSIRRYLKRR------DDSAGQGSNSQREKGNKKKR 148

Query: 159 GKGLGNCALRKSFSGRYDDGE------FDARVLYPVLERLEILMSLIHLDRFPDSLKSLI 218
           G+G  N          Y+DGE      FDA++++ VLE+L  ++S +HLDRFPDSLKSL+
Sbjct: 149 GRGKRNLG--------YEDGEETEEGGFDAKLMFIVLEKLGSVLSFVHLDRFPDSLKSLV 208

Query: 219 ETVSDIPVLALEVCTNLSIYSKFTNLCSRILSATLRPEHGDLSSTTVEVIKSLSPLILNH 278
           +TVS+IP+LALE    L+ Y +   +C +IL   L  +HGD++ T  E+ KSL+PL+L  
Sbjct: 209 QTVSEIPLLALEHSGVLN-YDRLMEMCGKILGGVLNSDHGDMALTAAEISKSLTPLLLMG 268

Query: 279 KDQARAFALGFVTVQIANVAKESDGVKSALVNLPRYLVQKAPEKSEPRSLAVDSIMEVVK 338
           K QAR+FALGFV+ ++ ++AK++  +K  + NLP++LV KAPEK+EPR  AV++++E+VK
Sbjct: 269 KHQARSFALGFVSRKLMSLAKDNPELKKVVSNLPKFLVHKAPEKAEPRGFAVEAVLEIVK 328

Query: 339 VMEFPDQIGFVDYVVKMTRGKSNLRLLAVDLISMLITSLSDPMA-IDSESELKDSWGFGC 398
            ME   Q  FVD+V+KM +GKSN R+LAVD+I +LI+SL +P+  I SE+ LKDSWG GC
Sbjct: 329 AMEVEGQSEFVDFVMKMCQGKSNFRVLAVDIIPLLISSLGNPLGDISSENGLKDSWGLGC 388

Query: 399 LVALVQRCSDASAPIRARALTNLAQLVVFLSENDKNKALLKEVLGSGDEHCKKNGDEIHA 458
           + ALVQRCSD SA IRARAL+NLAQ+V FLS +++++++LK+ LG   E  +  G  +  
Sbjct: 389 IDALVQRCSDTSALIRARALSNLAQVVEFLSGDERSRSILKQALGFNGETSEGKG-AVTD 448

Query: 459 LLRKRCVDEKAAVRKAALFLVTKCTTLLGGAMDGDMLKTVGIACSDPLVSIRKAAMSALS 511
           LL+KRCVDEKAAVR+AAL LVTK T+L+GG  DG +LKT+G +CSDPL+SIRKAA+SA+S
Sbjct: 449 LLKKRCVDEKAAVRRAALLLVTKLTSLMGGCFDGSILKTMGTSCSDPLISIRKAAVSAIS 486

[Close]

BLAST of Lsi09G014360 vs. NCBI nr
Match: gi|659117104|ref|XP_008458425.1| (PREDICTED: condensin-2 complex subunit D3 isoform X1 [Cucumis melo])

HSP 1 Score: 807.7 bits (2085), Expect = 1.1e-230
Identity = 442/510 (86.67%), Postives = 460/510 (90.20%), Query Frame = 1


Query: 1   MEEAISRILTELEEVRHFHDTTTLHSQPPPPLSDSALFDLQSLLDNSIGTDEQQPIDCLY 60
           MEEAISRIL ELEE+RHF D+TTLHS PP  LS+SALFDLQ+LLDNSI TDEQQP+D LY
Sbjct: 1   MEEAISRILIELEEIRHFDDSTTLHSHPP--LSESALFDLQTLLDNSISTDEQQPLDRLY 60

Query: 61  EDLSAKSLSPSSLTRAIASAMDDSSTRVSILASRVYLSLLLAPNAPVFTLFNPMDFLSFL 120
           EDLSAKSLS SSLTR IASAMD+SSTRVSILAS VYLSLLLAPNAPVFTLFNPMDFLSFL
Sbjct: 61  EDLSAKSLSLSSLTRGIASAMDESSTRVSILASTVYLSLLLAPNAPVFTLFNPMDFLSFL 120

Query: 121 RSMRRLLKQRPQAQPDQDDSNKESNAPKRKRKAAVKGKGLGNCALRKSFSGRYDDGEFDA 180
           R MRR LKQRPQ Q DQDDSNKES+APKRKRKA VKGKGL     R+S SGRYDDGE DA
Sbjct: 121 RCMRRFLKQRPQGQQDQDDSNKESSAPKRKRKAGVKGKGLRKRP-RQSCSGRYDDGELDA 180

Query: 181 RVLYPVLERLEILMSLIHLDRFPDSLKSLIETVSDIPVLALEVCTNLSIYSKFTNLCSRI 240
           RVLYP+LERLEILMSLIHLDRFPDSLKSLIETV DIPVL LE+CTNLSIYSKFT  CSRI
Sbjct: 181 RVLYPLLERLEILMSLIHLDRFPDSLKSLIETVVDIPVLTLEICTNLSIYSKFTEFCSRI 240

Query: 241 LSATLRPEHGDLSSTTVEVIKSLSPLILNHKDQARAFALGFVTVQIANVAKESDGVKSAL 300
           LSA LRPEHGDLS T VEVIKSL+P ILNHK+QARAFAL FVT+QI  VAKESDGVKSAL
Sbjct: 241 LSAMLRPEHGDLSHTAVEVIKSLTPSILNHKNQARAFALEFVTIQIGKVAKESDGVKSAL 300

Query: 301 VNLPRYLVQKAPEKSEPRSLAVDSIMEVVKVMEFPDQIGFVDYVVKMTRGKSNLRLLAVD 360
           VNLPRYLVQKAPEKSEPRSLAVDSIMEVVKVME PDQIGFVDYVVKMTRGKSNLRLLAVD
Sbjct: 301 VNLPRYLVQKAPEKSEPRSLAVDSIMEVVKVMELPDQIGFVDYVVKMTRGKSNLRLLAVD 360

Query: 361 LISMLITSLSDPMAIDSESELKDSWGFGCLVALVQRCSDASAPIRARALTNLAQLVVFLS 420
           LISMLI SLSDPM IDSE ELKDSW FGCLVALVQRCSDASAPIRARALTNLA LVVFLS
Sbjct: 361 LISMLIMSLSDPMVIDSEIELKDSWVFGCLVALVQRCSDASAPIRARALTNLAHLVVFLS 420

Query: 421 ENDKNKALLKEVLGSGDEHCKKNGDEIHALLRKRCVDEKAAVRKAALFLVTKCTTLLGGA 480
           ENDKNKAL+KE+LG G+        EI  LLRKRCVDEKAAVRKAALFLVTKCTT+LGGA
Sbjct: 421 ENDKNKALMKEMLGPGE-------GEILGLLRKRCVDEKAAVRKAALFLVTKCTTVLGGA 480

Query: 481 MDGDMLKTVGIACSDPLVSIRKAAMSALSE 511
           MDGD+LKTVGIACSDPLVSIRKAAMSALSE
Sbjct: 481 MDGDILKTVGIACSDPLVSIRKAAMSALSE 500

[Close]

BLAST of Lsi09G014360 vs. NCBI nr
Match: gi|659117118|ref|XP_008458433.1| (PREDICTED: condensin-2 complex subunit D3 isoform X2 [Cucumis melo])

HSP 1 Score: 807.7 bits (2085), Expect = 1.1e-230
Identity = 442/510 (86.67%), Postives = 460/510 (90.20%), Query Frame = 1


Query: 1   MEEAISRILTELEEVRHFHDTTTLHSQPPPPLSDSALFDLQSLLDNSIGTDEQQPIDCLY 60
           MEEAISRIL ELEE+RHF D+TTLHS PP  LS+SALFDLQ+LLDNSI TDEQQP+D LY
Sbjct: 1   MEEAISRILIELEEIRHFDDSTTLHSHPP--LSESALFDLQTLLDNSISTDEQQPLDRLY 60

Query: 61  EDLSAKSLSPSSLTRAIASAMDDSSTRVSILASRVYLSLLLAPNAPVFTLFNPMDFLSFL 120
           EDLSAKSLS SSLTR IASAMD+SSTRVSILAS VYLSLLLAPNAPVFTLFNPMDFLSFL
Sbjct: 61  EDLSAKSLSLSSLTRGIASAMDESSTRVSILASTVYLSLLLAPNAPVFTLFNPMDFLSFL 120

Query: 121 RSMRRLLKQRPQAQPDQDDSNKESNAPKRKRKAAVKGKGLGNCALRKSFSGRYDDGEFDA 180
           R MRR LKQRPQ Q DQDDSNKES+APKRKRKA VKGKGL     R+S SGRYDDGE DA
Sbjct: 121 RCMRRFLKQRPQGQQDQDDSNKESSAPKRKRKAGVKGKGLRKRP-RQSCSGRYDDGELDA 180

Query: 181 RVLYPVLERLEILMSLIHLDRFPDSLKSLIETVSDIPVLALEVCTNLSIYSKFTNLCSRI 240
           RVLYP+LERLEILMSLIHLDRFPDSLKSLIETV DIPVL LE+CTNLSIYSKFT  CSRI
Sbjct: 181 RVLYPLLERLEILMSLIHLDRFPDSLKSLIETVVDIPVLTLEICTNLSIYSKFTEFCSRI 240

Query: 241 LSATLRPEHGDLSSTTVEVIKSLSPLILNHKDQARAFALGFVTVQIANVAKESDGVKSAL 300
           LSA LRPEHGDLS T VEVIKSL+P ILNHK+QARAFAL FVT+QI  VAKESDGVKSAL
Sbjct: 241 LSAMLRPEHGDLSHTAVEVIKSLTPSILNHKNQARAFALEFVTIQIGKVAKESDGVKSAL 300

Query: 301 VNLPRYLVQKAPEKSEPRSLAVDSIMEVVKVMEFPDQIGFVDYVVKMTRGKSNLRLLAVD 360
           VNLPRYLVQKAPEKSEPRSLAVDSIMEVVKVME PDQIGFVDYVVKMTRGKSNLRLLAVD
Sbjct: 301 VNLPRYLVQKAPEKSEPRSLAVDSIMEVVKVMELPDQIGFVDYVVKMTRGKSNLRLLAVD 360

Query: 361 LISMLITSLSDPMAIDSESELKDSWGFGCLVALVQRCSDASAPIRARALTNLAQLVVFLS 420
           LISMLI SLSDPM IDSE ELKDSW FGCLVALVQRCSDASAPIRARALTNLA LVVFLS
Sbjct: 361 LISMLIMSLSDPMVIDSEIELKDSWVFGCLVALVQRCSDASAPIRARALTNLAHLVVFLS 420

Query: 421 ENDKNKALLKEVLGSGDEHCKKNGDEIHALLRKRCVDEKAAVRKAALFLVTKCTTLLGGA 480
           ENDKNKAL+KE+LG G+        EI  LLRKRCVDEKAAVRKAALFLVTKCTT+LGGA
Sbjct: 421 ENDKNKALMKEMLGPGE-------GEILGLLRKRCVDEKAAVRKAALFLVTKCTTVLGGA 480

Query: 481 MDGDMLKTVGIACSDPLVSIRKAAMSALSE 511
           MDGD+LKTVGIACSDPLVSIRKAAMSALSE
Sbjct: 481 MDGDILKTVGIACSDPLVSIRKAAMSALSE 500

[Close]

BLAST of Lsi09G014360 vs. NCBI nr
Match: gi|659117126|ref|XP_008458437.1| (PREDICTED: condensin-2 complex subunit D3 isoform X6 [Cucumis melo])

HSP 1 Score: 807.7 bits (2085), Expect = 1.1e-230
Identity = 442/510 (86.67%), Postives = 460/510 (90.20%), Query Frame = 1


Query: 1   MEEAISRILTELEEVRHFHDTTTLHSQPPPPLSDSALFDLQSLLDNSIGTDEQQPIDCLY 60
           MEEAISRIL ELEE+RHF D+TTLHS PP  LS+SALFDLQ+LLDNSI TDEQQP+D LY
Sbjct: 1   MEEAISRILIELEEIRHFDDSTTLHSHPP--LSESALFDLQTLLDNSISTDEQQPLDRLY 60

Query: 61  EDLSAKSLSPSSLTRAIASAMDDSSTRVSILASRVYLSLLLAPNAPVFTLFNPMDFLSFL 120
           EDLSAKSLS SSLTR IASAMD+SSTRVSILAS VYLSLLLAPNAPVFTLFNPMDFLSFL
Sbjct: 61  EDLSAKSLSLSSLTRGIASAMDESSTRVSILASTVYLSLLLAPNAPVFTLFNPMDFLSFL 120

Query: 121 RSMRRLLKQRPQAQPDQDDSNKESNAPKRKRKAAVKGKGLGNCALRKSFSGRYDDGEFDA 180
           R MRR LKQRPQ Q DQDDSNKES+APKRKRKA VKGKGL     R+S SGRYDDGE DA
Sbjct: 121 RCMRRFLKQRPQGQQDQDDSNKESSAPKRKRKAGVKGKGLRKRP-RQSCSGRYDDGELDA 180

Query: 181 RVLYPVLERLEILMSLIHLDRFPDSLKSLIETVSDIPVLALEVCTNLSIYSKFTNLCSRI 240
           RVLYP+LERLEILMSLIHLDRFPDSLKSLIETV DIPVL LE+CTNLSIYSKFT  CSRI
Sbjct: 181 RVLYPLLERLEILMSLIHLDRFPDSLKSLIETVVDIPVLTLEICTNLSIYSKFTEFCSRI 240

Query: 241 LSATLRPEHGDLSSTTVEVIKSLSPLILNHKDQARAFALGFVTVQIANVAKESDGVKSAL 300
           LSA LRPEHGDLS T VEVIKSL+P ILNHK+QARAFAL FVT+QI  VAKESDGVKSAL
Sbjct: 241 LSAMLRPEHGDLSHTAVEVIKSLTPSILNHKNQARAFALEFVTIQIGKVAKESDGVKSAL 300

Query: 301 VNLPRYLVQKAPEKSEPRSLAVDSIMEVVKVMEFPDQIGFVDYVVKMTRGKSNLRLLAVD 360
           VNLPRYLVQKAPEKSEPRSLAVDSIMEVVKVME PDQIGFVDYVVKMTRGKSNLRLLAVD
Sbjct: 301 VNLPRYLVQKAPEKSEPRSLAVDSIMEVVKVMELPDQIGFVDYVVKMTRGKSNLRLLAVD 360

Query: 361 LISMLITSLSDPMAIDSESELKDSWGFGCLVALVQRCSDASAPIRARALTNLAQLVVFLS 420
           LISMLI SLSDPM IDSE ELKDSW FGCLVALVQRCSDASAPIRARALTNLA LVVFLS
Sbjct: 361 LISMLIMSLSDPMVIDSEIELKDSWVFGCLVALVQRCSDASAPIRARALTNLAHLVVFLS 420

Query: 421 ENDKNKALLKEVLGSGDEHCKKNGDEIHALLRKRCVDEKAAVRKAALFLVTKCTTLLGGA 480
           ENDKNKAL+KE+LG G+        EI  LLRKRCVDEKAAVRKAALFLVTKCTT+LGGA
Sbjct: 421 ENDKNKALMKEMLGPGE-------GEILGLLRKRCVDEKAAVRKAALFLVTKCTTVLGGA 480

Query: 481 MDGDMLKTVGIACSDPLVSIRKAAMSALSE 511
           MDGD+LKTVGIACSDPLVSIRKAAMSALSE
Sbjct: 481 MDGDILKTVGIACSDPLVSIRKAAMSALSE 500

[Close]

BLAST of Lsi09G014360 vs. NCBI nr
Match: gi|659117122|ref|XP_008458435.1| (PREDICTED: condensin-2 complex subunit D3 isoform X4 [Cucumis melo])

HSP 1 Score: 623.6 bits (1607), Expect = 3.0e-175
Identity = 350/433 (80.83%), Postives = 369/433 (85.22%), Query Frame = 1


Query: 81  MDDSSTRVSILASRVYLSL---LLAPNAPVFTLFNPMDFLSFLRSMRRLLKQRPQAQPDQ 140
           M+++ + VS   SR+  SL   LLA   P +    P+      R MRR LKQRPQ Q DQ
Sbjct: 1   MNNNHSIVSTRTSRLNPSLCPLLLAELPPPWMNLPPV-----FRCMRRFLKQRPQGQQDQ 60

Query: 141 DDSNKESNAPKRKRKAAVKGKGLGNCALRKSFSGRYDDGEFDARVLYPVLERLEILMSLI 200
           DDSNKES+APKRKRKA VKGKGL     R+S SGRYDDGE DARVLYP+LERLEILMSLI
Sbjct: 61  DDSNKESSAPKRKRKAGVKGKGLRKRP-RQSCSGRYDDGELDARVLYPLLERLEILMSLI 120

Query: 201 HLDRFPDSLKSLIETVSDIPVLALEVCTNLSIYSKFTNLCSRILSATLRPEHGDLSSTTV 260
           HLDRFPDSLKSLIETV DIPVL LE+CTNLSIYSKFT  CSRILSA LRPEHGDLS T V
Sbjct: 121 HLDRFPDSLKSLIETVVDIPVLTLEICTNLSIYSKFTEFCSRILSAMLRPEHGDLSHTAV 180

Query: 261 EVIKSLSPLILNHKDQARAFALGFVTVQIANVAKESDGVKSALVNLPRYLVQKAPEKSEP 320
           EVIKSL+P ILNHK+QARAFAL FVT+QI  VAKESDGVKSALVNLPRYLVQKAPEKSEP
Sbjct: 181 EVIKSLTPSILNHKNQARAFALEFVTIQIGKVAKESDGVKSALVNLPRYLVQKAPEKSEP 240

Query: 321 RSLAVDSIMEVVKVMEFPDQIGFVDYVVKMTRGKSNLRLLAVDLISMLITSLSDPMAIDS 380
           RSLAVDSIMEVVKVME PDQIGFVDYVVKMTRGKSNLRLLAVDLISMLI SLSDPM IDS
Sbjct: 241 RSLAVDSIMEVVKVMELPDQIGFVDYVVKMTRGKSNLRLLAVDLISMLIMSLSDPMVIDS 300

Query: 381 ESELKDSWGFGCLVALVQRCSDASAPIRARALTNLAQLVVFLSENDKNKALLKEVLGSGD 440
           E ELKDSW FGCLVALVQRCSDASAPIRARALTNLA LVVFLSENDKNKAL+KE+LG G+
Sbjct: 301 EIELKDSWVFGCLVALVQRCSDASAPIRARALTNLAHLVVFLSENDKNKALMKEMLGPGE 360

Query: 441 EHCKKNGDEIHALLRKRCVDEKAAVRKAALFLVTKCTTLLGGAMDGDMLKTVGIACSDPL 500
                   EI  LLRKRCVDEKAAVRKAALFLVTKCTT+LGGAMDGD+LKTVGIACSDPL
Sbjct: 361 -------GEILGLLRKRCVDEKAAVRKAALFLVTKCTTVLGGAMDGDILKTVGIACSDPL 420

Query: 501 VSIRKAAMSALSE 511
           VSIRKAAMSALSE
Sbjct: 421 VSIRKAAMSALSE 420

[Close]

BLAST of Lsi09G014360 vs. NCBI nr
Match: gi|225432246|ref|XP_002275652.1| (PREDICTED: condensin-2 complex subunit D3 [Vitis vinifera])

HSP 1 Score: 549.3 bits (1414), Expect = 7.2e-153
Identity = 302/512 (58.98%), Postives = 388/512 (75.78%), Query Frame = 1


Query: 1   MEEAISRILTELEEVRHFHDTTTLHSQPPP-PLSDSALFDLQSLLDNSIGTDEQQPIDCL 60
           MEE IS ILT+LE     H T +L    PP P+S S L DLQ+LLDN++ T++   ID L
Sbjct: 1   MEEVISGILTDLEA----HSTASLSDPNPPLPISQSTLSDLQTLLDNAMATEDSHHIDRL 60

Query: 61  YEDLSAKSLSPSSLTRAIASAMDDSSTRVSILASRVYLSLLLAPNAPVFTLFNPMDFLSF 120
           +EDLS+++LS SSL R +ASAMD S T +S+LASRVYLSLLL+ NAPVFTLF PM FLS 
Sbjct: 61  FEDLSSRNLSISSLIRPMASAMDSSPTDISLLASRVYLSLLLSLNAPVFTLFTPMAFLSL 120

Query: 121 LRSMRRLLKQRPQAQPDQDDSNKESNAPK-RKRKAAVKGKGLGNCALRKSFSGRYDDGEF 180
           LRS+R+  K R    P   +S++ S A   RKRK   + +G+ +           ++ EF
Sbjct: 121 LRSIRQCFKNRKMGPPRFGESSRGSYAAAYRKRKGGGRARGVRSRVREVDDGDGSEESEF 180

Query: 181 DARVLYPVLERLEILMSLIHLDRFPDSLKSLIETVSDIPVLALEVCTNLSIYSKFTNLCS 240
           D R+L+ VLERL++++ LIHLDRFPDSLKSL++TV++IP +ALE+C N + + K T+LCS
Sbjct: 181 DVRMLFSVLERLQLVLGLIHLDRFPDSLKSLVQTVAEIPAMALELCGNTASFDKLTHLCS 240

Query: 241 RILSATLRPEHGDLSSTTVEVIKSLSPLILNHKDQARAFALGFVTVQIANVAKESDGVKS 300
           R+L+  L  EHGD ++T  EV+KSLSPLIL  K +AR FALGF+  ++  +AKE DGVK 
Sbjct: 241 RVLTEVLSSEHGDQATTAAEVLKSLSPLILLAKSEARTFALGFMMNRMMGMAKEFDGVKK 300

Query: 301 ALVNLPRYLVQKAPEKSEPRSLAVDSIMEVVKVMEFPDQIGFVDYVVKMTRGKSNLRLLA 360
           A+VNLPRYL+QKAPEKSEPR+LAV+S+ME+VK MEF +QIGFV YVVKMT+GKS+ RLLA
Sbjct: 301 AIVNLPRYLLQKAPEKSEPRALAVESVMEIVKTMEFEEQIGFVMYVVKMTQGKSHFRLLA 360

Query: 361 VDLISMLITSLSDPMAIDSESELKDSWGFGCLVALVQRCSDASAPIRARALTNLAQLVVF 420
           VDL  +LI SL DP+ +++ +E+K+SWG  CL AL+QRCSDA+A IRARALTNLAQ+V F
Sbjct: 361 VDLFPLLIMSLRDPLGVNTGNEVKNSWGLNCLEALIQRCSDATAGIRARALTNLAQIVGF 420

Query: 421 LSENDKNKALLKEVLGSGDEHCKKNGDEIHALLRKRCVDEKAAVRKAALFLVTKCTTLLG 480
           LS +D+N+ +LKE +G G    +K    ++ LLRKRC+DEKAAVRKAAL L+TK T LLG
Sbjct: 421 LSTDDRNQVMLKEGMGFGSSSHQKLEGGVNDLLRKRCMDEKAAVRKAALLLITKLTGLLG 480

Query: 481 GAMDGDMLKTVGIACSDPLVSIRKAAMSALSE 511
           G   GD+LKT+G+ACSDPLVSIRKAA+SALSE
Sbjct: 481 GEFVGDLLKTMGMACSDPLVSIRKAAISALSE 508

The following BLAST results are available for this feature:

BLAST of Lsi09G014360 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi09G014360 vs. TrEMBL


Match Name	E-value	Identity	Description
F6HE58_VITVI	5.0e-153	58.98	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0020g01160 PE=4 SV=...	[more]
M5XMD0_PRUPE	1.1e-147	57.53	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000283mg PE=4 SV=1	[more]
A0A061EW85_THECC	1.4e-142	56.29	Condensin-2 complex subunit D3 isoform 1 OS=Theobroma cacao GN=TCM_021222 PE=4 S...	[more]
W9R6X7_9ROSA	6.4e-140	56.42	Uncharacterized protein OS=Morus notabilis GN=L484_023511 PE=4 SV=1	[more]
A0A0D2RPS6_GOSRA	1.1e-139	55.53	Uncharacterized protein OS=Gossypium raimondii GN=B456_011G191000 PE=4 SV=1	[more]

BLAST of Lsi09G014360 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G15890.1	1.2e-118	50.94	binding	[more]

BLAST of Lsi09G014360 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659117104\|ref\|XP_008458425.1\|	1.1e-230	86.67	PREDICTED: condensin-2 complex subunit D3 isoform X1 [Cucumis melo]	[more]
gi\|659117118\|ref\|XP_008458433.1\|	1.1e-230	86.67	PREDICTED: condensin-2 complex subunit D3 isoform X2 [Cucumis melo]	[more]
gi\|659117126\|ref\|XP_008458437.1\|	1.1e-230	86.67	PREDICTED: condensin-2 complex subunit D3 isoform X6 [Cucumis melo]	[more]
gi\|659117122\|ref\|XP_008458435.1\|	3.0e-175	80.83	PREDICTED: condensin-2 complex subunit D3 isoform X4 [Cucumis melo]	[more]
gi\|225432246\|ref\|XP_002275652.1\|	7.2e-153	58.98	PREDICTED: condensin-2 complex subunit D3 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0007076	mitotic chromosome condensation

Vocabulary: **Molecular Function**
Term	Definition
GO:0005488	binding

Vocabulary: **INTERPRO**
Term	Definition
IPR026971	CND1/NCAPD3
IPR016024	ARM-type_fold
IPR011989	ARM-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051304	chromosome separation
biological_process	GO:0010032	meiotic chromosome condensation
biological_process	GO:0007076	mitotic chromosome condensation
cellular_component	GO:0000785	chromatin
cellular_component	GO:0000779	condensed chromosome, centromeric region
cellular_component	GO:0000799	nuclear condensin complex
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0042393	histone binding
molecular_function	GO:0005488	binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G014360.1	Lsi09G014360.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011989	Armadillo-like helical	GENE3D	G3DSA:1.25.10.10		coord: 314..510 score: 5.
IPR016024	Armadillo-type fold	unknown	SSF48371	ARM repeat	coord: 340..511 score: 6.78
IPR026971	Condensin subunit 1/Condensin-2 complex subunit D3	PANTHER	PTHR14222	CONDENSIN	coord: 18..511 score: 2.0
None	No IPR available	PANTHER	PTHR14222:SF1	CONDENSIN-2 COMPLEX SUBUNIT D3	coord: 18..511 score: 2.0

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi09G014360	Cucumber (Gy14) v2	cgyblsiB136
Lsi09G014360	Cucumber (Gy14) v2	cgyblsiB367
Lsi09G014360	Melon (DHL92) v3.6.1	lsimedB019
Lsi09G014360	Melon (DHL92) v3.6.1	lsimedB032
Lsi09G014360	Melon (DHL92) v3.6.1	lsimedB042
Lsi09G014360	Silver-seed gourd	carlsiB061
Lsi09G014360	Silver-seed gourd	carlsiB550
Lsi09G014360	Silver-seed gourd	carlsiB641
Lsi09G014360	Cucumber (Chinese Long) v3	cuclsiB163
Lsi09G014360	Cucumber (Chinese Long) v3	cuclsiB265
Lsi09G014360	Cucumber (Chinese Long) v3	cuclsiB425
Lsi09G014360	Watermelon (97103) v2	lsiwmbB015
Lsi09G014360	Watermelon (97103) v2	lsiwmbB026
Lsi09G014360	Wax gourd	lsiwgoB025
Lsi09G014360	Wax gourd	lsiwgoB041
Lsi09G014360	Bottle gourd (USVL1VR-Ls)	lsilsiB006
Lsi09G014360	Cucumber (Gy14) v1	cgylsiB068
Lsi09G014360	Cucumber (Gy14) v1	cgylsiB412
Lsi09G014360	Cucurbita maxima (Rimu)	cmalsiB225
Lsi09G014360	Cucurbita maxima (Rimu)	cmalsiB331
Lsi09G014360	Cucurbita maxima (Rimu)	cmalsiB741
Lsi09G014360	Cucurbita maxima (Rimu)	cmalsiB811
Lsi09G014360	Cucurbita moschata (Rifu)	cmolsiB213
Lsi09G014360	Cucurbita moschata (Rifu)	cmolsiB320
Lsi09G014360	Cucurbita moschata (Rifu)	cmolsiB733
Lsi09G014360	Cucurbita moschata (Rifu)	cmolsiB797
Lsi09G014360	Cucurbita pepo (Zucchini)	cpelsiB101
Lsi09G014360	Cucurbita pepo (Zucchini)	cpelsiB247
Lsi09G014360	Cucurbita pepo (Zucchini)	cpelsiB484
Lsi09G014360	Cucurbita pepo (Zucchini)	cpelsiB697
Lsi09G014360	Wild cucumber (PI 183967)	cpilsiB149
Lsi09G014360	Wild cucumber (PI 183967)	cpilsiB405
Lsi09G014360	Cucumber (Chinese Long) v2	culsiB150
Lsi09G014360	Melon (DHL92) v3.5.1	lsimeB017
Lsi09G014360	Melon (DHL92) v3.5.1	lsimeB029
Lsi09G014360	Watermelon (Charleston Gray)	lsiwcgB017
Lsi09G014360	Watermelon (Charleston Gray)	lsiwcgB029
Lsi09G014360	Watermelon (97103) v1	lsiwmB017
Lsi09G014360	Watermelon (97103) v1	lsiwmB040