Lsi09G014270 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi09G014270
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description40S ribosomal protein S21
Locationchr09 : 22268235 .. 22270041 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGTCTCTATCATACATTGATTCTACGATCGAATTATTGTATTCGTTTCTGACTACTTCCGATTCCTCTAATAGTTTGTTCATTCATATACGGATTAGAACTCAAATTTCTCAGTCTCAATCCGTCGTTTCTTTACTCCAGCAGGTTGTTATATAGGTATTTGACGATTCATCGTAGCCAAAATGCAGAACGAAGAGGGAAAGATCACCGAGCTTTACATTCCTAGAAAGTGGTACGTAATCAGCACATTTTGTTTGTTAATTTACACTATTTTCATTTTTGGTTTTTAACTCTTTTCCGAATTTGTTCGTGGTATCTAATTTCAGCTCTGCCACAAACCGACTCATCACCTCCAAGGACCACGCCTCAGTTCAGATTAACATTGGTCACTTGGATGAGAATGGCATCTACACAGGCCAATTCTCCACTTTCGCTCTCTGCGGTTTCATCCGTGCTCAGGTTCGATTTCATTAATAGTTTCTCTTCATGTTCTTGTTTATTGTTTGTCTATTATATAGAATTTTGGCTGCACGTTTCTGTTTATTTTGTGATTTTGGTTGATCAGTGGCGGCTTCACTTGCATCAAAGTTTTCTTATTTGAATTGATTCATGTATGCTGGTAACTTGATTTATTATATTGAATCGCTACGATAAAATTGTATATTTGGAAATTTTGACTTTAGGTACCAACCTGAAATCTTGTTAATAATTTAATATTTATTGGTTTTTCAATAAAAATGTTCTTATGTTGAATGCAACACACTGTGCTGCTTCTATTTATGATTTACCCTCTCAGGAAGTTTTTTCGACTGTCTTTATTATCTAGTTAGCTATTTTATCTGAGGGCACACGATTTGGCATAGCTTCCAAGCCTTACTAAAATGGTTGCAACACAAATTGATTCTGTTTTCTGGAGAGTTTTTCTGTTCAAAGATTAGAGTTTGGTCCTTGTCTTTTAATTTTATAGAATATCAATGTTTTTGCTTTGATGGATTTTGATAGATATATAGAACTAGTTATCAATTTAGTTATTAATGTTTCCTTTTCACGAGTTCCAATTGAAGTTAGTGGTATAGTTTTATTTTAGTCACTGTCCCAAAATTCTCAGAAACTATAGACAAGAAAATCTCATGACAAACCACTCCTTAACAAGTATATAAGAGTGTCTTAGCCCTTGGGCATATTTTATGTATATTCGGGTAATAATTGTTTGAAGTTTATTTTTTCTTCATTGGACGAGATAAATATAAAGCTAATGTTTGAAAACTCAGGTGAAATACTTGTTTGTTTAAACATCAATTTATACCCTGAACTTTGGGAGTTGTATCAATTTAAACTCCAAATTATTAACTGCATCAATTTAAGCCCCGGACTTTTATAAGTGTATCAATTTAAACCCCTAAATTTTGGTAGTTGTATCAATTTAAACCATCAATTATGTGTTATTTAGATACACTTATAAAAATTTGAGGGTTTAAATTGATGTATTTGTAGAAATCTAGGGTTTAAATTGAGGCACTTATGAAAGTTTGAGGTTTAAATTGATACAATTGTTAGTTTGGAGTCTAAATTGATACAATTAATAGTTTGTGGTTTAAATTGATACAACCCCAACGTTTAGAGGTATAAATTGATATTTGTCTTAATTTTTAATATCTACAAGGAAATTAATGTATTGGTGTGATGTAATTTGACAGGGAGATGCGGACAGTGCTTTGGATAGGTTGTGGCAGAAGAAGAAAGCCGAAGTTCGCCAACAGTAGAAAATGCAAAATTTCTTCTACTTGAAATCTTATGTTTCTAA

mRNA sequence

ATGACCTCTGCCACAAACCGACTCATCACCTCCAAGGACCACGCCTCAGTTCAGATTAACATTGGTCACTTGGATGAGAATGGCATCTACACAGGCCAATTCTCCACTTTCGCTCTCTGCGGTTTCATCCGTGCTCAGGTTGTGGCAGAAGAAGAAAGCCGAAGTTCGCCAACAGTAGAAAATGCAAAATTTCTTCTACTTGAAATCTTATGTTTCTAA

Coding sequence (CDS)

ATGACCTCTGCCACAAACCGACTCATCACCTCCAAGGACCACGCCTCAGTTCAGATTAACATTGGTCACTTGGATGAGAATGGCATCTACACAGGCCAATTCTCCACTTTCGCTCTCTGCGGTTTCATCCGTGCTCAGGTTGTGGCAGAAGAAGAAAGCCGAAGTTCGCCAACAGTAGAAAATGCAAAATTTCTTCTACTTGAAATCTTATGTTTCTAA

Protein sequence

MTSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQVVAEEESRSSPTVENAKFLLLEILCF
BLAST of Lsi09G014270 vs. Swiss-Prot
Match: RS212_ARATH (40S ribosomal protein S21-2 OS=Arabidopsis thaliana GN=RPS21C PE=1 SV=2)

HSP 1 Score: 87.0 bits (214), Expect = 8.9e-17
Identity = 39/44 (88.64%), Postives = 43/44 (97.73%), Query Frame = 1

Query: 3  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ 47
          SATNRLITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQ
Sbjct: 18 SATNRLITSKDHASVQLNIGHLDANGLYTGQFTTFALCGFVRAQ 61

BLAST of Lsi09G014270 vs. Swiss-Prot
Match: RS211_ARATH (40S ribosomal protein S21-1 OS=Arabidopsis thaliana GN=RPS21B PE=1 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.5e-16
Identity = 38/44 (86.36%), Postives = 43/44 (97.73%), Query Frame = 1

Query: 3  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ 47
          SATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQ
Sbjct: 18 SATNRMITSKDHASVQLNIGHLDANGLYTGQFTTFALCGFVRAQ 61

BLAST of Lsi09G014270 vs. Swiss-Prot
Match: RS21_ORYSJ (40S ribosomal protein S21 OS=Oryza sativa subsp. japonica GN=RPS21 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.4e-14
Identity = 36/44 (81.82%), Postives = 42/44 (95.45%), Query Frame = 1

Query: 3  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ 47
          SATNR+IT+KDHASVQINIGH+DENG+Y G+F+TFAL GFIRAQ
Sbjct: 18 SATNRIITAKDHASVQINIGHVDENGLYDGRFTTFALSGFIRAQ 61

BLAST of Lsi09G014270 vs. Swiss-Prot
Match: RS21_MAIZE (40S ribosomal protein S21 OS=Zea mays GN=RPS21 PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 5.4e-14
Identity = 35/44 (79.55%), Postives = 40/44 (90.91%), Query Frame = 1

Query: 3  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ 47
          SATNR+IT+KDHASVQINIGHLD NG+Y G F+TFAL GF+RAQ
Sbjct: 18 SATNRIITAKDHASVQINIGHLDANGLYDGHFTTFALSGFVRAQ 61

BLAST of Lsi09G014270 vs. Swiss-Prot
Match: RS21_CYAPA (40S ribosomal protein S21 OS=Cyanophora paradoxa GN=RPS21 PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.9e-11
Identity = 30/44 (68.18%), Postives = 40/44 (90.91%), Query Frame = 1

Query: 3  SATNRLITSKDHASVQINIGHLDEN-GIYTGQFSTFALCGFIRA 46
          SATNRLI++ DHA+VQIN+GH+D N G+YTG ++TFALCGF+R+
Sbjct: 18 SATNRLISATDHAAVQINVGHVDPNSGLYTGDYTTFALCGFVRS 61

BLAST of Lsi09G014270 vs. TrEMBL
Match: A0A0A0L7W3_CUCSA (40S ribosomal protein S21 OS=Cucumis sativus GN=Csa_3G154280 PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.4e-16
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 1

Query: 3  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ 47
          SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
Sbjct: 18 SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ 61

BLAST of Lsi09G014270 vs. TrEMBL
Match: A0A0A0KHD3_CUCSA (40S ribosomal protein S21 OS=Cucumis sativus GN=Csa_6G194160 PE=3 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.4e-16
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 1

Query: 3  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ 47
          SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
Sbjct: 18 SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ 61

BLAST of Lsi09G014270 vs. TrEMBL
Match: A0A0D2U4H9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G299700 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.4e-16
Identity = 44/51 (86.27%), Postives = 47/51 (92.16%), Query Frame = 1

Query: 3  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQVVAEEES 54
          SATNRLITSKDHASVQIN+GHLDE G YTG FSTFALCGF+RAQ +AEEES
Sbjct: 18 SATNRLITSKDHASVQINVGHLDELGRYTGTFSTFALCGFVRAQALAEEES 68

BLAST of Lsi09G014270 vs. TrEMBL
Match: W9R6P8_9ROSA (40S ribosomal protein S21 OS=Morus notabilis GN=L484_023537 PE=3 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 4.0e-16
Identity = 42/44 (95.45%), Postives = 44/44 (100.00%), Query Frame = 1

Query: 3  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ 47
          SATNRLITSKDHASVQIN+GHLDENGIYTGQFSTFALCGF+RAQ
Sbjct: 18 SATNRLITSKDHASVQINVGHLDENGIYTGQFSTFALCGFVRAQ 61

BLAST of Lsi09G014270 vs. TrEMBL
Match: W9RV16_9ROSA (40S ribosomal protein S21-2 OS=Morus notabilis GN=L484_009223 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 4.0e-16
Identity = 43/45 (95.56%), Postives = 44/45 (97.78%), Query Frame = 1

Query: 3   SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQV 48
           SATNRLITSKDHASVQIN GHLDENGIYTGQFSTFALCGF+RAQV
Sbjct: 105 SATNRLITSKDHASVQINAGHLDENGIYTGQFSTFALCGFVRAQV 149

BLAST of Lsi09G014270 vs. TAIR10
Match: AT5G27700.1 (AT5G27700.1 Ribosomal protein S21e )

HSP 1 Score: 87.0 bits (214), Expect = 5.0e-18
Identity = 39/44 (88.64%), Postives = 43/44 (97.73%), Query Frame = 1

Query: 3  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ 47
          SATNRLITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQ
Sbjct: 18 SATNRLITSKDHASVQLNIGHLDANGLYTGQFTTFALCGFVRAQ 61

BLAST of Lsi09G014270 vs. TAIR10
Match: AT3G53890.1 (AT3G53890.1 Ribosomal protein S21e )

HSP 1 Score: 86.3 bits (212), Expect = 8.6e-18
Identity = 38/44 (86.36%), Postives = 43/44 (97.73%), Query Frame = 1

Query: 3  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ 47
          SATNR+ITSKDHASVQ+NIGHLD NG+YTGQF+TFALCGF+RAQ
Sbjct: 18 SATNRMITSKDHASVQLNIGHLDANGLYTGQFTTFALCGFVRAQ 61

BLAST of Lsi09G014270 vs. NCBI nr
Match: gi|645306597|ref|XP_008246212.1| (PREDICTED: 40S ribosomal protein S21-2-like [Prunus mume])

HSP 1 Score: 92.4 bits (228), Expect = 3.4e-16
Identity = 43/45 (95.56%), Postives = 45/45 (100.00%), Query Frame = 1

Query: 3  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQV 48
          SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCG++RAQV
Sbjct: 18 SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGYVRAQV 62

BLAST of Lsi09G014270 vs. NCBI nr
Match: gi|659076819|ref|XP_008438883.1| (PREDICTED: 40S ribosomal protein S21-2 [Cucumis melo])

HSP 1 Score: 92.4 bits (228), Expect = 3.4e-16
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 1

Query: 3  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ 47
          SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
Sbjct: 18 SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ 61

BLAST of Lsi09G014270 vs. NCBI nr
Match: gi|763771886|gb|KJB39009.1| (hypothetical protein B456_007G299700 [Gossypium raimondii])

HSP 1 Score: 92.4 bits (228), Expect = 3.4e-16
Identity = 44/51 (86.27%), Postives = 47/51 (92.16%), Query Frame = 1

Query: 3  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQVVAEEES 54
          SATNRLITSKDHASVQIN+GHLDE G YTG FSTFALCGF+RAQ +AEEES
Sbjct: 18 SATNRLITSKDHASVQINVGHLDELGRYTGTFSTFALCGFVRAQALAEEES 68

BLAST of Lsi09G014270 vs. NCBI nr
Match: gi|449450678|ref|XP_004143089.1| (PREDICTED: 40S ribosomal protein S21-2 [Cucumis sativus])

HSP 1 Score: 92.4 bits (228), Expect = 3.4e-16
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 1

Query: 3  SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ 47
          SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ
Sbjct: 18 SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQ 61

BLAST of Lsi09G014270 vs. NCBI nr
Match: gi|703138610|ref|XP_010106784.1| (40S ribosomal protein S21-2 [Morus notabilis])

HSP 1 Score: 91.7 bits (226), Expect = 5.8e-16
Identity = 43/45 (95.56%), Postives = 44/45 (97.78%), Query Frame = 1

Query: 3   SATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQV 48
           SATNRLITSKDHASVQIN GHLDENGIYTGQFSTFALCGF+RAQV
Sbjct: 105 SATNRLITSKDHASVQINAGHLDENGIYTGQFSTFALCGFVRAQV 149

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
RS212_ARATH8.9e-1788.6440S ribosomal protein S21-2 OS=Arabidopsis thaliana GN=RPS21C PE=1 SV=2[more]
RS211_ARATH1.5e-1686.3640S ribosomal protein S21-1 OS=Arabidopsis thaliana GN=RPS21B PE=1 SV=1[more]
RS21_ORYSJ1.4e-1481.8240S ribosomal protein S21 OS=Oryza sativa subsp. japonica GN=RPS21 PE=3 SV=1[more]
RS21_MAIZE5.4e-1479.5540S ribosomal protein S21 OS=Zea mays GN=RPS21 PE=3 SV=1[more]
RS21_CYAPA1.9e-1168.1840S ribosomal protein S21 OS=Cyanophora paradoxa GN=RPS21 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0L7W3_CUCSA2.4e-16100.0040S ribosomal protein S21 OS=Cucumis sativus GN=Csa_3G154280 PE=3 SV=1[more]
A0A0A0KHD3_CUCSA2.4e-16100.0040S ribosomal protein S21 OS=Cucumis sativus GN=Csa_6G194160 PE=3 SV=1[more]
A0A0D2U4H9_GOSRA2.4e-1686.27Uncharacterized protein OS=Gossypium raimondii GN=B456_007G299700 PE=4 SV=1[more]
W9R6P8_9ROSA4.0e-1695.4540S ribosomal protein S21 OS=Morus notabilis GN=L484_023537 PE=3 SV=1[more]
W9RV16_9ROSA4.0e-1695.5640S ribosomal protein S21-2 OS=Morus notabilis GN=L484_009223 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G27700.15.0e-1888.64 Ribosomal protein S21e [more]
AT3G53890.18.6e-1886.36 Ribosomal protein S21e [more]
Match NameE-valueIdentityDescription
gi|645306597|ref|XP_008246212.1|3.4e-1695.56PREDICTED: 40S ribosomal protein S21-2-like [Prunus mume][more]
gi|659076819|ref|XP_008438883.1|3.4e-16100.00PREDICTED: 40S ribosomal protein S21-2 [Cucumis melo][more]
gi|763771886|gb|KJB39009.1|3.4e-1686.27hypothetical protein B456_007G299700 [Gossypium raimondii][more]
gi|449450678|ref|XP_004143089.1|3.4e-16100.00PREDICTED: 40S ribosomal protein S21-2 [Cucumis sativus][more]
gi|703138610|ref|XP_010106784.1|5.8e-1695.5640S ribosomal protein S21-2 [Morus notabilis][more]
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR001931Ribosomal_S21e
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi09G014270.1Lsi09G014270.1mRNA


Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001931Ribosomal protein S21ePRODOMPD006584coord: 11..50
score: 6.0
IPR001931Ribosomal protein S21ePANTHERPTHR1044240S RIBOSOMAL PROTEIN S21coord: 3..46
score: 2.4
IPR001931Ribosomal protein S21ePFAMPF01249Ribosomal_S21ecoord: 3..47
score: 2.5

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi09G014270Cucurbita maxima (Rimu)cmalsiB225
Lsi09G014270Cucurbita maxima (Rimu)cmalsiB331
Lsi09G014270Cucurbita maxima (Rimu)cmalsiB339
Lsi09G014270Cucurbita maxima (Rimu)cmalsiB741
Lsi09G014270Cucurbita maxima (Rimu)cmalsiB811
Lsi09G014270Cucurbita moschata (Rifu)cmolsiB213
Lsi09G014270Cucurbita moschata (Rifu)cmolsiB320
Lsi09G014270Cucurbita moschata (Rifu)cmolsiB328
Lsi09G014270Cucurbita moschata (Rifu)cmolsiB733
Lsi09G014270Cucurbita moschata (Rifu)cmolsiB797
Lsi09G014270Cucurbita pepo (Zucchini)cpelsiB101
Lsi09G014270Cucurbita pepo (Zucchini)cpelsiB247
Lsi09G014270Cucurbita pepo (Zucchini)cpelsiB484
Lsi09G014270Cucurbita pepo (Zucchini)cpelsiB697
Lsi09G014270Wild cucumber (PI 183967)cpilsiB149
Lsi09G014270Wild cucumber (PI 183967)cpilsiB406
Lsi09G014270Cucumber (Chinese Long) v2culsiB150
Lsi09G014270Cucumber (Chinese Long) v2culsiB401
Lsi09G014270Cucumber (Chinese Long) v2culsiB404
Lsi09G014270Melon (DHL92) v3.5.1lsimeB017
Lsi09G014270Melon (DHL92) v3.5.1lsimeB029
Lsi09G014270Watermelon (Charleston Gray)lsiwcgB017
Lsi09G014270Watermelon (Charleston Gray)lsiwcgB029
Lsi09G014270Watermelon (97103) v1lsiwmB017
Lsi09G014270Watermelon (97103) v1lsiwmB040
Lsi09G014270Cucumber (Gy14) v2cgyblsiB136
Lsi09G014270Cucumber (Gy14) v2cgyblsiB368
Lsi09G014270Melon (DHL92) v3.6.1lsimedB019
Lsi09G014270Melon (DHL92) v3.6.1lsimedB032
Lsi09G014270Silver-seed gourdcarlsiB061
Lsi09G014270Silver-seed gourdcarlsiB550
Lsi09G014270Silver-seed gourdcarlsiB641
Lsi09G014270Cucumber (Chinese Long) v3cuclsiB163
Lsi09G014270Cucumber (Chinese Long) v3cuclsiB265
Lsi09G014270Cucumber (Chinese Long) v3cuclsiB426
Lsi09G014270Watermelon (97103) v2lsiwmbB015
Lsi09G014270Watermelon (97103) v2lsiwmbB026
Lsi09G014270Watermelon (97103) v2lsiwmbB032
Lsi09G014270Wax gourdlsiwgoB025
Lsi09G014270Wax gourdlsiwgoB041
Lsi09G014270Bottle gourd (USVL1VR-Ls)lsilsiB006
Lsi09G014270Cucumber (Gy14) v1cgylsiB285
Lsi09G014270Cucumber (Gy14) v1cgylsiB412