Lsi09G014270 (gene) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGACGTCTCTATCATACATTGATTCTACGATCGAATTATTGTATTCGTTTCTGACTACTTCCGATTCCTCTAATAGTTTGTTCATTCATATACGGATTAGAACTCAAATTTCTCAGTCTCAATCCGTCGTTTCTTTACTCCAGCAGGTTGTTATATAGGTATTTGACGATTCATCGTAGCCAAAATGCAGAACGAAGAGGGAAAGATCACCGAGCTTTACATTCCTAGAAAGTGGTACGTAATCAGCACATTTTGTTTGTTAATTTACACTATTTTCATTTTTGGTTTTTAACTCTTTTCCGAATTTGTTCGTGGTATCTAATTTCAGCTCTGCCACAAACCGACTCATCACCTCCAAGGACCACGCCTCAGTTCAGATTAACATTGGTCACTTGGATGAGAATGGCATCTACACAGGCCAATTCTCCACTTTCGCTCTCTGCGGTTTCATCCGTGCTCAGGTTCGATTTCATTAATAGTTTCTCTTCATGTTCTTGTTTATTGTTTGTCTATTATATAGAATTTTGGCTGCACGTTTCTGTTTATTTTGTGATTTTGGTTGATCAGTGGCGGCTTCACTTGCATCAAAGTTTTCTTATTTGAATTGATTCATGTATGCTGGTAACTTGATTTATTATATTGAATCGCTACGATAAAATTGTATATTTGGAAATTTTGACTTTAGGTACCAACCTGAAATCTTGTTAATAATTTAATATTTATTGGTTTTTCAATAAAAATGTTCTTATGTTGAATGCAACACACTGTGCTGCTTCTATTTATGATTTACCCTCTCAGGAAGTTTTTTCGACTGTCTTTATTATCTAGTTAGCTATTTTATCTGAGGGCACACGATTTGGCATAGCTTCCAAGCCTTACTAAAATGGTTGCAACACAAATTGATTCTGTTTTCTGGAGAGTTTTTCTGTTCAAAGATTAGAGTTTGGTCCTTGTCTTTTAATTTTATAGAATATCAATGTTTTTGCTTTGATGGATTTTGATAGATATATAGAACTAGTTATCAATTTAGTTATTAATGTTTCCTTTTCACGAGTTCCAATTGAAGTTAGTGGTATAGTTTTATTTTAGTCACTGTCCCAAAATTCTCAGAAACTATAGACAAGAAAATCTCATGACAAACCACTCCTTAACAAGTATATAAGAGTGTCTTAGCCCTTGGGCATATTTTATGTATATTCGGGTAATAATTGTTTGAAGTTTATTTTTTCTTCATTGGACGAGATAAATATAAAGCTAATGTTTGAAAACTCAGGTGAAATACTTGTTTGTTTAAACATCAATTTATACCCTGAACTTTGGGAGTTGTATCAATTTAAACTCCAAATTATTAACTGCATCAATTTAAGCCCCGGACTTTTATAAGTGTATCAATTTAAACCCCTAAATTTTGGTAGTTGTATCAATTTAAACCATCAATTATGTGTTATTTAGATACACTTATAAAAATTTGAGGGTTTAAATTGATGTATTTGTAGAAATCTAGGGTTTAAATTGAGGCACTTATGAAAGTTTGAGGTTTAAATTGATACAATTGTTAGTTTGGAGTCTAAATTGATACAATTAATAGTTTGTGGTTTAAATTGATACAACCCCAACGTTTAGAGGTATAAATTGATATTTGTCTTAATTTTTAATATCTACAAGGAAATTAATGTATTGGTGTGATGTAATTTGACAGGGAGATGCGGACAGTGCTTTGGATAGGTTGTGGCAGAAGAAGAAAGCCGAAGTTCGCCAACAGTAGAAAATGCAAAATTTCTTCTACTTGAAATCTTATGTTTCTAA ATGACCTCTGCCACAAACCGACTCATCACCTCCAAGGACCACGCCTCAGTTCAGATTAACATTGGTCACTTGGATGAGAATGGCATCTACACAGGCCAATTCTCCACTTTCGCTCTCTGCGGTTTCATCCGTGCTCAGGTTGTGGCAGAAGAAGAAAGCCGAAGTTCGCCAACAGTAGAAAATGCAAAATTTCTTCTACTTGAAATCTTATGTTTCTAA ATGACCTCTGCCACAAACCGACTCATCACCTCCAAGGACCACGCCTCAGTTCAGATTAACATTGGTCACTTGGATGAGAATGGCATCTACACAGGCCAATTCTCCACTTTCGCTCTCTGCGGTTTCATCCGTGCTCAGGTTGTGGCAGAAGAAGAAAGCCGAAGTTCGCCAACAGTAGAAAATGCAAAATTTCTTCTACTTGAAATCTTATGTTTCTAA MTSATNRLITSKDHASVQINIGHLDENGIYTGQFSTFALCGFIRAQVVAEEESRSSPTVENAKFLLLEILCF
BLAST of Lsi09G014270 vs. Swiss-Prot
Match: RS212_ARATH (40S ribosomal protein S21-2 OS=Arabidopsis thaliana GN=RPS21C PE=1 SV=2) HSP 1 Score: 87.0 bits (214), Expect = 8.9e-17 Identity = 39/44 (88.64%), Postives = 43/44 (97.73%), Query Frame = 1
BLAST of Lsi09G014270 vs. Swiss-Prot
Match: RS211_ARATH (40S ribosomal protein S21-1 OS=Arabidopsis thaliana GN=RPS21B PE=1 SV=1) HSP 1 Score: 86.3 bits (212), Expect = 1.5e-16 Identity = 38/44 (86.36%), Postives = 43/44 (97.73%), Query Frame = 1
BLAST of Lsi09G014270 vs. Swiss-Prot
Match: RS21_ORYSJ (40S ribosomal protein S21 OS=Oryza sativa subsp. japonica GN=RPS21 PE=3 SV=1) HSP 1 Score: 79.7 bits (195), Expect = 1.4e-14 Identity = 36/44 (81.82%), Postives = 42/44 (95.45%), Query Frame = 1
BLAST of Lsi09G014270 vs. Swiss-Prot
Match: RS21_MAIZE (40S ribosomal protein S21 OS=Zea mays GN=RPS21 PE=3 SV=1) HSP 1 Score: 77.8 bits (190), Expect = 5.4e-14 Identity = 35/44 (79.55%), Postives = 40/44 (90.91%), Query Frame = 1
BLAST of Lsi09G014270 vs. Swiss-Prot
Match: RS21_CYAPA (40S ribosomal protein S21 OS=Cyanophora paradoxa GN=RPS21 PE=3 SV=1) HSP 1 Score: 69.3 bits (168), Expect = 1.9e-11 Identity = 30/44 (68.18%), Postives = 40/44 (90.91%), Query Frame = 1
BLAST of Lsi09G014270 vs. TrEMBL
Match: A0A0A0L7W3_CUCSA (40S ribosomal protein S21 OS=Cucumis sativus GN=Csa_3G154280 PE=3 SV=1) HSP 1 Score: 92.4 bits (228), Expect = 2.4e-16 Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 1
BLAST of Lsi09G014270 vs. TrEMBL
Match: A0A0A0KHD3_CUCSA (40S ribosomal protein S21 OS=Cucumis sativus GN=Csa_6G194160 PE=3 SV=1) HSP 1 Score: 92.4 bits (228), Expect = 2.4e-16 Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 1
BLAST of Lsi09G014270 vs. TrEMBL
Match: A0A0D2U4H9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G299700 PE=4 SV=1) HSP 1 Score: 92.4 bits (228), Expect = 2.4e-16 Identity = 44/51 (86.27%), Postives = 47/51 (92.16%), Query Frame = 1
BLAST of Lsi09G014270 vs. TrEMBL
Match: W9R6P8_9ROSA (40S ribosomal protein S21 OS=Morus notabilis GN=L484_023537 PE=3 SV=1) HSP 1 Score: 91.7 bits (226), Expect = 4.0e-16 Identity = 42/44 (95.45%), Postives = 44/44 (100.00%), Query Frame = 1
BLAST of Lsi09G014270 vs. TrEMBL
Match: W9RV16_9ROSA (40S ribosomal protein S21-2 OS=Morus notabilis GN=L484_009223 PE=4 SV=1) HSP 1 Score: 91.7 bits (226), Expect = 4.0e-16 Identity = 43/45 (95.56%), Postives = 44/45 (97.78%), Query Frame = 1
BLAST of Lsi09G014270 vs. TAIR10
Match: AT5G27700.1 (AT5G27700.1 Ribosomal protein S21e ) HSP 1 Score: 87.0 bits (214), Expect = 5.0e-18 Identity = 39/44 (88.64%), Postives = 43/44 (97.73%), Query Frame = 1
BLAST of Lsi09G014270 vs. TAIR10
Match: AT3G53890.1 (AT3G53890.1 Ribosomal protein S21e ) HSP 1 Score: 86.3 bits (212), Expect = 8.6e-18 Identity = 38/44 (86.36%), Postives = 43/44 (97.73%), Query Frame = 1
BLAST of Lsi09G014270 vs. NCBI nr
Match: gi|645306597|ref|XP_008246212.1| (PREDICTED: 40S ribosomal protein S21-2-like [Prunus mume]) HSP 1 Score: 92.4 bits (228), Expect = 3.4e-16 Identity = 43/45 (95.56%), Postives = 45/45 (100.00%), Query Frame = 1
BLAST of Lsi09G014270 vs. NCBI nr
Match: gi|659076819|ref|XP_008438883.1| (PREDICTED: 40S ribosomal protein S21-2 [Cucumis melo]) HSP 1 Score: 92.4 bits (228), Expect = 3.4e-16 Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 1
BLAST of Lsi09G014270 vs. NCBI nr
Match: gi|763771886|gb|KJB39009.1| (hypothetical protein B456_007G299700 [Gossypium raimondii]) HSP 1 Score: 92.4 bits (228), Expect = 3.4e-16 Identity = 44/51 (86.27%), Postives = 47/51 (92.16%), Query Frame = 1
BLAST of Lsi09G014270 vs. NCBI nr
Match: gi|449450678|ref|XP_004143089.1| (PREDICTED: 40S ribosomal protein S21-2 [Cucumis sativus]) HSP 1 Score: 92.4 bits (228), Expect = 3.4e-16 Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 1
BLAST of Lsi09G014270 vs. NCBI nr
Match: gi|703138610|ref|XP_010106784.1| (40S ribosomal protein S21-2 [Morus notabilis]) HSP 1 Score: 91.7 bits (226), Expect = 5.8e-16 Identity = 43/45 (95.56%), Postives = 44/45 (97.78%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |