Lsi09G013600 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi09G013600
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionSerinc-domain containing serine and sphingolipid biosynthesis protein
Locationchr09 : 21627042 .. 21627308 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCTGCTTGTTTTCATGCTGTGCATCTCTCACGTGCGGTCTCTGCTCCTCCGTCGCCGCCGGCATCTCCAAAAGCTCCGCTAGACTTGCTTACTGTGGCCTTTTCGGCGTCTCCTTGGTCGTTTCATGGATTCTCAGAGAGTTTGGAGCTCCTCTGATGGAGAAGATTCCATGTGAGTTTCATCACTTGCTTGAATTTTCGTTATTCTACCTGATTTCAATTGTTTGCTCGTATCTTCGATTTTGTTTTTCTTTAGCTTCTTGA

mRNA sequence

ATGTCCTGCTTGTTTTCATGCTGTGCATCTCTCACGTGCGGTCTCTGCTCCTCCGTCGCCGCCGGCATCTCCAAAAGCTCCGCTAGACTTGCTTACTGTGGCCTTTTCGGCGTCTCCTTGGTCGTTTCATGGATTCTCAGAGAGTTTGGAGCTCCTCTGATGGAGAAGATTCCATGTGAGTTTCATCACTTGCTTGAATTTTCGTTATTCTACCTGATTTCAATTGTTTGCTCGTATCTTCGATTTTGTTTTTCTTTAGCTTCTTGA

Coding sequence (CDS)

ATGTCCTGCTTGTTTTCATGCTGTGCATCTCTCACGTGCGGTCTCTGCTCCTCCGTCGCCGCCGGCATCTCCAAAAGCTCCGCTAGACTTGCTTACTGTGGCCTTTTCGGCGTCTCCTTGGTCGTTTCATGGATTCTCAGAGAGTTTGGAGCTCCTCTGATGGAGAAGATTCCATGTGAGTTTCATCACTTGCTTGAATTTTCGTTATTCTACCTGATTTCAATTGTTTGCTCGTATCTTCGATTTTGTTTTTCTTTAGCTTCTTGA

Protein sequence

MSCLFSCCASLTCGLCSSVAAGISKSSARLAYCGLFGVSLVVSWILREFGAPLMEKIPCEFHHLLEFSLFYLISIVCSYLRFCFSLAS
Homology
[Close]
BLAST of Lsi09G013600 vs. TrEMBL
Match: A0A0A0KCI8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G238640 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 6.0e-22
Identity = 55/58 (94.83%), Postives = 58/58 (100.00%), Query Frame = 1 

Query: 1  MSCLFSCCASLTCGLCSSVAAGISKSSARLAYCGLFGVSLVVSWILREFGAPLMEKIP 59
          MSCLFSCCASLTCGLCSSVAAGIS+SSARLAYCGLFGVSLVVSWILREFGAP+MEK+P
Sbjct: 1  MSCLFSCCASLTCGLCSSVAAGISRSSARLAYCGLFGVSLVVSWILREFGAPIMEKMP 58

[Close]
BLAST of Lsi09G013600 vs. TrEMBL
Match: A0A068TSF5_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00025981001 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 6.2e-19
Identity = 49/58 (84.48%), Postives = 54/58 (93.10%), Query Frame = 1 

Query: 1  MSCLFSCCASLTCGLCSSVAAGISKSSARLAYCGLFGVSLVVSWILREFGAPLMEKIP 59
          MSCL SCCASLTCGLCSSVA+GISK SARLAYCGLFG+SL++SWILRE GAPL+EK P
Sbjct: 1  MSCLASCCASLTCGLCSSVASGISKKSARLAYCGLFGLSLIISWILREVGAPLLEKFP 58

[Close]
BLAST of Lsi09G013600 vs. TrEMBL
Match: V4RYU0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005070mg PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.4e-18
Identity = 49/58 (84.48%), Postives = 53/58 (91.38%), Query Frame = 1 

Query: 1  MSCLFSCCASLTCGLCSSVAAGISKSSARLAYCGLFGVSLVVSWILREFGAPLMEKIP 59
          MSCL SCCASLTCGLCSSVA+GISK SARLAYCGLFG+SL+VSWILRE G PL+EK P
Sbjct: 1  MSCLASCCASLTCGLCSSVASGISKKSARLAYCGLFGLSLIVSWILREVGTPLLEKFP 58

[Close]
BLAST of Lsi09G013600 vs. TrEMBL
Match: A0A067GHC2_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g039061mg PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.4e-18
Identity = 49/58 (84.48%), Postives = 53/58 (91.38%), Query Frame = 1 

Query: 1  MSCLFSCCASLTCGLCSSVAAGISKSSARLAYCGLFGVSLVVSWILREFGAPLMEKIP 59
          MSCL SCCASLTCGLCSSVA+GISK SARLAYCGLFG+SL+VSWILRE G PL+EK P
Sbjct: 1  MSCLASCCASLTCGLCSSVASGISKKSARLAYCGLFGLSLIVSWILREVGTPLLEKFP 58

[Close]
BLAST of Lsi09G013600 vs. TrEMBL
Match: W9RU03_9ROSA (Putative serine incorporator OS=Morus notabilis GN=L484_010036 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 5.3e-18
Identity = 48/58 (82.76%), Postives = 53/58 (91.38%), Query Frame = 1 

Query: 1  MSCLFSCCASLTCGLCSSVAAGISKSSARLAYCGLFGVSLVVSWILREFGAPLMEKIP 59
          MSCL SCCA+ TCGLC+SVA+GISK SAR+AYCGLFGVSLVVSWILRE GAPL+EK P
Sbjct: 1  MSCLASCCAAATCGLCTSVASGISKKSARIAYCGLFGVSLVVSWILREVGAPLLEKFP 58

[Close]
BLAST of Lsi09G013600 vs. TAIR10
Match: AT3G06170.1 (AT3G06170.1 Serinc-domain containing serine and sphingolipid biosynthesis protein)

HSP 1 Score: 95.1 bits (235), Expect = 2.3e-20
Identity = 46/56 (82.14%), Postives = 51/56 (91.07%), Query Frame = 1 

Query: 3  CLFSCCASLTCGLCSSVAAGISKSSARLAYCGLFGVSLVVSWILREFGAPLMEKIP 59
          CL SCCAS TCGLCSSVA+GIS+ SAR+AYCGLFG SLVVSWILRE GAPL+EK+P
Sbjct: 4  CLASCCASATCGLCSSVASGISRKSARIAYCGLFGASLVVSWILRETGAPLLEKLP 59

[Close]
BLAST of Lsi09G013600 vs. TAIR10
Match: AT1G16180.1 (AT1G16180.1 Serinc-domain containing serine and sphingolipid biosynthesis protein)

HSP 1 Score: 80.5 bits (197), Expect = 5.7e-16
Identity = 38/57 (66.67%), Postives = 46/57 (80.70%), Query Frame = 1 

Query: 2  SCLFSCCASLTCGLCSSVAAGISKSSARLAYCGLFGVSLVVSWILREFGAPLMEKIP 59
          SCL SCCA+  C  C +V +GIS+ SAR+AYCGLF +SL+VSWILRE  APLMEK+P
Sbjct: 5  SCLASCCAACACDACRTVVSGISRRSARIAYCGLFALSLIVSWILREVAAPLMEKLP 61

[Close]
BLAST of Lsi09G013600 vs. NCBI nr
Match: gi|659117344|ref|XP_008458551.1| (PREDICTED: serine incorporator 3 [Cucumis melo])

HSP 1 Score: 112.1 bits (279), Expect = 5.1e-22
Identity = 56/58 (96.55%), Postives = 58/58 (100.00%), Query Frame = 1 

Query: 1  MSCLFSCCASLTCGLCSSVAAGISKSSARLAYCGLFGVSLVVSWILREFGAPLMEKIP 59
          MSCLFSCCASLTCGLCSSVAAGIS+SSARLAYCGLFGVSLVVSWILREFGAPLMEK+P
Sbjct: 1  MSCLFSCCASLTCGLCSSVAAGISRSSARLAYCGLFGVSLVVSWILREFGAPLMEKMP 58

[Close]
BLAST of Lsi09G013600 vs. NCBI nr
Match: gi|449465212|ref|XP_004150322.1| (PREDICTED: serine incorporator 3 [Cucumis sativus])

HSP 1 Score: 111.3 bits (277), Expect = 8.6e-22
Identity = 55/58 (94.83%), Postives = 58/58 (100.00%), Query Frame = 1 

Query: 1  MSCLFSCCASLTCGLCSSVAAGISKSSARLAYCGLFGVSLVVSWILREFGAPLMEKIP 59
          MSCLFSCCASLTCGLCSSVAAGIS+SSARLAYCGLFGVSLVVSWILREFGAP+MEK+P
Sbjct: 1  MSCLFSCCASLTCGLCSSVAAGISRSSARLAYCGLFGVSLVVSWILREFGAPIMEKMP 58

[Close]
BLAST of Lsi09G013600 vs. NCBI nr
Match: gi|661897275|emb|CDO98987.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 101.3 bits (251), Expect = 8.9e-19
Identity = 49/58 (84.48%), Postives = 54/58 (93.10%), Query Frame = 1 

Query: 1  MSCLFSCCASLTCGLCSSVAAGISKSSARLAYCGLFGVSLVVSWILREFGAPLMEKIP 59
          MSCL SCCASLTCGLCSSVA+GISK SARLAYCGLFG+SL++SWILRE GAPL+EK P
Sbjct: 1  MSCLASCCASLTCGLCSSVASGISKKSARLAYCGLFGLSLIISWILREVGAPLLEKFP 58

[Close]
BLAST of Lsi09G013600 vs. NCBI nr
Match: gi|641856047|gb|KDO74827.1| (hypothetical protein CISIN_1g039061mg [Citrus sinensis])

HSP 1 Score: 100.1 bits (248), Expect = 2.0e-18
Identity = 49/58 (84.48%), Postives = 53/58 (91.38%), Query Frame = 1 

Query: 1  MSCLFSCCASLTCGLCSSVAAGISKSSARLAYCGLFGVSLVVSWILREFGAPLMEKIP 59
          MSCL SCCASLTCGLCSSVA+GISK SARLAYCGLFG+SL+VSWILRE G PL+EK P
Sbjct: 1  MSCLASCCASLTCGLCSSVASGISKKSARLAYCGLFGLSLIVSWILREVGTPLLEKFP 58

[Close]
BLAST of Lsi09G013600 vs. NCBI nr
Match: gi|567853277|ref|XP_006419802.1| (hypothetical protein CICLE_v10005070mg [Citrus clementina])

HSP 1 Score: 100.1 bits (248), Expect = 2.0e-18
Identity = 49/58 (84.48%), Postives = 53/58 (91.38%), Query Frame = 1 

Query: 1  MSCLFSCCASLTCGLCSSVAAGISKSSARLAYCGLFGVSLVVSWILREFGAPLMEKIP 59
          MSCL SCCASLTCGLCSSVA+GISK SARLAYCGLFG+SL+VSWILRE G PL+EK P
Sbjct: 1  MSCLASCCASLTCGLCSSVASGISKKSARLAYCGLFGLSLIVSWILREVGTPLLEKFP 58

The following BLAST results are available for this feature:
BLAST of Lsi09G013600 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi09G013600 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KCI8_CUCSA6.0e-2294.83Uncharacterized protein OS=Cucumis sativus GN=Csa_6G238640 PE=4 SV=1[more]
A0A068TSF5_COFCA6.2e-1984.48Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00025981001 PE=4 SV=1[more]
V4RYU0_9ROSI1.4e-1884.48Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005070mg PE=4 SV=1[more]
A0A067GHC2_CITSI1.4e-1884.48Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g039061mg PE=4 SV=1[more]
W9RU03_9ROSA5.3e-1882.76Putative serine incorporator OS=Morus notabilis GN=L484_010036 PE=4 SV=1[more]
BLAST of Lsi09G013600 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G06170.12.3e-2082.14 Serinc-domain containing serine and sphingolipid biosynthesis protei... [more]
AT1G16180.15.7e-1666.67 Serinc-domain containing serine and sphingolipid biosynthesis protei... [more]
BLAST of Lsi09G013600 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659117344|ref|XP_008458551.1|5.1e-2296.55PREDICTED: serine incorporator 3 [Cucumis melo][more]
gi|449465212|ref|XP_004150322.1|8.6e-2294.83PREDICTED: serine incorporator 3 [Cucumis sativus][more]
gi|661897275|emb|CDO98987.1|8.9e-1984.48unnamed protein product [Coffea canephora][more]
gi|641856047|gb|KDO74827.1|2.0e-1884.48hypothetical protein CISIN_1g039061mg [Citrus sinensis][more]
gi|567853277|ref|XP_006419802.1|2.0e-1884.48hypothetical protein CICLE_v10005070mg [Citrus clementina][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR005016TDE1/TMS
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0015825 L-serine transport
cellular_component GO:0009507 chloroplast
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
cellular_component GO:0005840 ribosome
molecular_function GO:0003674 molecular_function
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0015194 L-serine transmembrane transporter activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi09G013600.1Lsi09G013600.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005016Serine incorporator/TMS membrane proteinPANTHERPTHR10383SERINE INCORPORATORcoord: 1..58
score: 1.7
NoneNo IPR availablePANTHERPTHR10383:SF24SUBFAMILY NOT NAMEDcoord: 1..58
score: 1.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi09G013600Csa6G238640Cucumber (Chinese Long) v2culsiB399
Lsi09G013600CSPI06G15600Wild cucumber (PI 183967)cpilsiB402
Lsi09G013600Cucsa.260920Cucumber (Gy14) v1cgylsiB425
Lsi09G013600CmaCh17G002740Cucurbita maxima (Rimu)cmalsiB331
Lsi09G013600CmoCh17G002610Cucurbita moschata (Rifu)cmolsiB320
Lsi09G013600CmoCh08G011450Cucurbita moschata (Rifu)cmolsiB797
Lsi09G013600Cla009370Watermelon (97103) v1lsiwmB040
Lsi09G013600MELO3C021398Melon (DHL92) v3.5.1lsimeB017
Lsi09G013600ClCG06G005770Watermelon (Charleston Gray)lsiwcgB029
Lsi09G013600MELO3C021398.2Melon (DHL92) v3.6.1lsimedB019
Lsi09G013600Cla97C06G115280Watermelon (97103) v2lsiwmbB026
Lsi09G013600Bhi12G001595Wax gourdlsiwgoB023
Lsi09G013600Cp4.1LG12g02270Cucurbita pepo (Zucchini)cpelsiB101
Lsi09G013600CsGy6G014900Cucumber (Gy14) v2cgyblsiB370
Lsi09G013600Carg05455Silver-seed gourdcarlsiB061
Lsi09G013600CsaV3_6G018550Cucumber (Chinese Long) v3cuclsiB428
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi09G013600Bottle gourd (USVL1VR-Ls)lsilsiB006
Lsi09G013600Bottle gourd (USVL1VR-Ls)lsilsiB012
Lsi09G013600Cucumber (Gy14) v1cgylsiB412
Lsi09G013600Cucurbita maxima (Rimu)cmalsiB225
Lsi09G013600Cucurbita maxima (Rimu)cmalsiB741
Lsi09G013600Cucurbita maxima (Rimu)cmalsiB811
Lsi09G013600Cucurbita moschata (Rifu)cmolsiB213
Lsi09G013600Cucurbita moschata (Rifu)cmolsiB733
Lsi09G013600Cucurbita pepo (Zucchini)cpelsiB254
Lsi09G013600Cucurbita pepo (Zucchini)cpelsiB484
Lsi09G013600Cucurbita pepo (Zucchini)cpelsiB697
Lsi09G013600Wild cucumber (PI 183967)cpilsiB149
Lsi09G013600Cucumber (Chinese Long) v2culsiB150
Lsi09G013600Melon (DHL92) v3.5.1lsimeB029
Lsi09G013600Watermelon (Charleston Gray)lsiwcgB017
Lsi09G013600Watermelon (Charleston Gray)lsiwcgB032
Lsi09G013600Watermelon (97103) v1lsiwmB013
Lsi09G013600Watermelon (97103) v1lsiwmB017
Lsi09G013600Cucumber (Gy14) v2cgyblsiB136
Lsi09G013600Melon (DHL92) v3.6.1lsimedB032
Lsi09G013600Silver-seed gourdcarlsiB198
Lsi09G013600Silver-seed gourdcarlsiB296
Lsi09G013600Silver-seed gourdcarlsiB550
Lsi09G013600Cucumber (Chinese Long) v3cuclsiB163
Lsi09G013600Watermelon (97103) v2lsiwmbB015
Lsi09G013600Watermelon (97103) v2lsiwmbB029
Lsi09G013600Wax gourdlsiwgoB041
Lsi09G013600Wax gourdlsiwgoB050