Lsi09G011040 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi09G011040
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_38
Location	chr09 : 17681048 .. 17681320 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAAAGGTATCGTGTGGGCAACAGCAGAGGATTTAGCGAGGAACCGTGGGCGTGTTCTGTCTCTTTATCGCCAGATATTGCGGAGCCTCAACTCCCCAAATTTGCCTCTCAGCTTCGCAGCTAGATTAGCAAAGAAGGCGGAGGTTCGTGGCATTTTCTTGCTTGCTTCTGAAGAGCGATCTCTTCACAATATTGAAGACCTTATTGATACTGCTGAGTACTCCCTTTCCCTTTTAAGGAAGGGAGAAATTCCCAAATATATTCAATGA

mRNA sequence

ATGGCGAAAGGTATCGTGTGGGCAACAGCAGAGGATTTAGCGAGGAACCGTGGGCGTGTTCTGTCTCTTTATCGCCAGATATTGCGGAGCCTCAACTCCCCAAATTTGCCTCTCAGCTTCGCAGCTAGATTAGCAAAGAAGGCGGAGGTTCGTGGCATTTTCTTGCTTGCTTCTGAAGAGCGATCTCTTCACAATATTGAAGACCTTATTGATACTGCTGAGTACTCCCTTTCCCTTTTAAGGAAGGGAGAAATTCCCAAATATATTCAATGA

Coding sequence (CDS)

ATGGCGAAAGGTATCGTGTGGGCAACAGCAGAGGATTTAGCGAGGAACCGTGGGCGTGTTCTGTCTCTTTATCGCCAGATATTGCGGAGCCTCAACTCCCCAAATTTGCCTCTCAGCTTCGCAGCTAGATTAGCAAAGAAGGCGGAGGTTCGTGGCATTTTCTTGCTTGCTTCTGAAGAGCGATCTCTTCACAATATTGAAGACCTTATTGATACTGCTGAGTACTCCCTTTCCCTTTTAAGGAAGGGAGAAATTCCCAAATATATTCAATGA

Protein sequence

MAKGIVWATAEDLARNRGRVLSLYRQILRSLNSPNLPLSFAARLAKKAEVRGIFLLASEERSLHNIEDLIDTAEYSLSLLRKGEIPKYIQ

Homology

[Close]

BLAST of Lsi09G011040 vs. TrEMBL
Match: A0A0A0LL01_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G120390 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.1e-39
Identity = 86/90 (95.56%), Postives = 89/90 (98.89%), Query Frame = 1


Query: 1  MAKGIVWATAEDLARNRGRVLSLYRQILRSLNSPNLPLSFAARLAKKAEVRGIFLLASEE 60
          MAKGI+WATAEDLARNRGRV+SLYRQILRSLNSPNLPLSFAARLAKKAEVR IF+LASEE
Sbjct: 1  MAKGIIWATAEDLARNRGRVISLYRQILRSLNSPNLPLSFAARLAKKAEVRAIFMLASEE 60

Query: 61 RSLHNIEDLIDTAEYSLSLLRKGEIPKYIQ 91
          RSLHNIEDLIDTAEYSLSLLRKGEIPKYIQ
Sbjct: 61 RSLHNIEDLIDTAEYSLSLLRKGEIPKYIQ 90

[Close]

BLAST of Lsi09G011040 vs. TrEMBL
Match: A0A067K530_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20189 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 1.8e-37
Identity = 81/90 (90.00%), Postives = 88/90 (97.78%), Query Frame = 1


Query: 1  MAKGIVWATAEDLARNRGRVLSLYRQILRSLNSPNLPLSFAARLAKKAEVRGIFLLASEE 60
          MAKG++WATAEDLARNRGRVLSLYRQILRSLNSP+LPL+ AARLAKKAEVR IF+LASEE
Sbjct: 1  MAKGLIWATAEDLARNRGRVLSLYRQILRSLNSPSLPLNLAARLAKKAEVRAIFMLASEE 60

Query: 61 RSLHNIEDLIDTAEYSLSLLRKGEIPKYIQ 91
          RSLHNI+DLIDTAEYSLS+LRKGEIPKYIQ
Sbjct: 61 RSLHNIDDLIDTAEYSLSILRKGEIPKYIQ 90

[Close]

BLAST of Lsi09G011040 vs. TrEMBL
Match: M5X1P0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014023mg PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 2.8e-35
Identity = 77/90 (85.56%), Postives = 84/90 (93.33%), Query Frame = 1


Query: 1  MAKGIVWATAEDLARNRGRVLSLYRQILRSLNSPNLPLSFAARLAKKAEVRGIFLLASEE 60
          M KG++WATAEDLARNRGRVLSLYRQILRSLNSP+LPL+ AARLAKKAE R IF++ASEE
Sbjct: 1  MGKGVIWATAEDLARNRGRVLSLYRQILRSLNSPDLPLNLAARLAKKAEARAIFVVASEE 60

Query: 61 RSLHNIEDLIDTAEYSLSLLRKGEIPKYIQ 91
          RSLHNI+DLID A YSLSLLRKGEIPKYIQ
Sbjct: 61 RSLHNIDDLIDAAHYSLSLLRKGEIPKYIQ 90

[Close]

BLAST of Lsi09G011040 vs. TrEMBL
Match: A0A068ULA0_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00028620001 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 3.7e-35
Identity = 77/90 (85.56%), Postives = 85/90 (94.44%), Query Frame = 1


Query: 1  MAKGIVWATAEDLARNRGRVLSLYRQILRSLNSPNLPLSFAARLAKKAEVRGIFLLASEE 60
          MAKG++WATAEDLARNRGRVLSLYRQILRSLNSP LPL+ AARL+KKAEVR IF+L SEE
Sbjct: 1  MAKGLIWATAEDLARNRGRVLSLYRQILRSLNSPALPLNLAARLSKKAEVRAIFMLGSEE 60

Query: 61 RSLHNIEDLIDTAEYSLSLLRKGEIPKYIQ 91
          RS+HNIEDLID AEYSLSLLRKGE+PK+IQ
Sbjct: 61 RSIHNIEDLIDAAEYSLSLLRKGEMPKHIQ 90

[Close]

BLAST of Lsi09G011040 vs. TrEMBL
Match: A0A059CAW5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E04248 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 4.8e-35
Identity = 76/90 (84.44%), Postives = 85/90 (94.44%), Query Frame = 1


Query: 1  MAKGIVWATAEDLARNRGRVLSLYRQILRSLNSPNLPLSFAARLAKKAEVRGIFLLASEE 60
          MAKG++WATAEDLARNRGRVLSLYRQILRSLNSP+LPL+ AARL+KKAE + IF+LA+EE
Sbjct: 1  MAKGLIWATAEDLARNRGRVLSLYRQILRSLNSPSLPLTLAARLSKKAEAKAIFMLAAEE 60

Query: 61 RSLHNIEDLIDTAEYSLSLLRKGEIPKYIQ 91
          RSLHNIEDL+D  EYSLSLLRKGEIPKYIQ
Sbjct: 61 RSLHNIEDLMDIGEYSLSLLRKGEIPKYIQ 90

[Close]

BLAST of Lsi09G011040 vs. TAIR10
Match: AT1G65032.1 (AT1G65032.1 unknown protein)

HSP 1 Score: 115.9 bits (289), Expect = 1.3e-26
Identity = 56/84 (66.67%), Postives = 70/84 (83.33%), Query Frame = 1


Query: 3  KGIVWATAEDLARNRGRVLSLYRQILRSLNSPNLPLSFAARLAKKAEVRGIFLLASEERS 62
          K ++W TAE+ A+NRG+VLSLYRQ+LRS+NSP L LS+A+RLAKKAEVR IFL  SEE S
Sbjct: 2  KSLIWLTAEEAAKNRGKVLSLYRQLLRSINSPKLQLSYASRLAKKAEVRTIFLFGSEEIS 61

Query: 63 LHNIEDLIDTAEYSLSLLRKGEIP 87
           HN+ DLI T EY+LS L++G+IP
Sbjct: 62 KHNVADLIRTGEYALSQLKQGKIP 85

[Close]

BLAST of Lsi09G011040 vs. NCBI nr
Match: gi|449442323|ref|XP_004138931.1| (PREDICTED: uncharacterized protein LOC101207229 [Cucumis sativus])

HSP 1 Score: 170.2 bits (430), Expect = 1.6e-39
Identity = 86/90 (95.56%), Postives = 89/90 (98.89%), Query Frame = 1


Query: 1  MAKGIVWATAEDLARNRGRVLSLYRQILRSLNSPNLPLSFAARLAKKAEVRGIFLLASEE 60
          MAKGI+WATAEDLARNRGRV+SLYRQILRSLNSPNLPLSFAARLAKKAEVR IF+LASEE
Sbjct: 1  MAKGIIWATAEDLARNRGRVISLYRQILRSLNSPNLPLSFAARLAKKAEVRAIFMLASEE 60

Query: 61 RSLHNIEDLIDTAEYSLSLLRKGEIPKYIQ 91
          RSLHNIEDLIDTAEYSLSLLRKGEIPKYIQ
Sbjct: 61 RSLHNIEDLIDTAEYSLSLLRKGEIPKYIQ 90

[Close]

BLAST of Lsi09G011040 vs. NCBI nr
Match: gi|802711209|ref|XP_012084603.1| (PREDICTED: uncharacterized protein LOC105643971 [Jatropha curcas])

HSP 1 Score: 162.9 bits (411), Expect = 2.6e-37
Identity = 81/90 (90.00%), Postives = 88/90 (97.78%), Query Frame = 1


Query: 1  MAKGIVWATAEDLARNRGRVLSLYRQILRSLNSPNLPLSFAARLAKKAEVRGIFLLASEE 60
          MAKG++WATAEDLARNRGRVLSLYRQILRSLNSP+LPL+ AARLAKKAEVR IF+LASEE
Sbjct: 1  MAKGLIWATAEDLARNRGRVLSLYRQILRSLNSPSLPLNLAARLAKKAEVRAIFMLASEE 60

Query: 61 RSLHNIEDLIDTAEYSLSLLRKGEIPKYIQ 91
          RSLHNI+DLIDTAEYSLS+LRKGEIPKYIQ
Sbjct: 61 RSLHNIDDLIDTAEYSLSILRKGEIPKYIQ 90

[Close]

BLAST of Lsi09G011040 vs. NCBI nr
Match: gi|470142952|ref|XP_004307153.1| (PREDICTED: uncharacterized protein LOC101295655 [Fragaria vesca subsp. vesca])

HSP 1 Score: 159.8 bits (403), Expect = 2.2e-36
Identity = 80/88 (90.91%), Postives = 85/88 (96.59%), Query Frame = 1


Query: 3  KGIVWATAEDLARNRGRVLSLYRQILRSLNSPNLPLSFAARLAKKAEVRGIFLLASEERS 62
          KG+VWATAEDLARNRGRVLSLYRQILRS+NSPNLPL+ AARLAKKAEVR IF+LASEERS
Sbjct: 2  KGLVWATAEDLARNRGRVLSLYRQILRSINSPNLPLNLAARLAKKAEVRAIFMLASEERS 61

Query: 63 LHNIEDLIDTAEYSLSLLRKGEIPKYIQ 91
          LHNIEDLID A+YSLSLLRKGEIPKYIQ
Sbjct: 62 LHNIEDLIDAADYSLSLLRKGEIPKYIQ 89

[Close]

BLAST of Lsi09G011040 vs. NCBI nr
Match: gi|596012236|ref|XP_007218655.1| (hypothetical protein PRUPE_ppa014023mg [Prunus persica])

HSP 1 Score: 155.6 bits (392), Expect = 4.1e-35
Identity = 77/90 (85.56%), Postives = 84/90 (93.33%), Query Frame = 1


Query: 1  MAKGIVWATAEDLARNRGRVLSLYRQILRSLNSPNLPLSFAARLAKKAEVRGIFLLASEE 60
          M KG++WATAEDLARNRGRVLSLYRQILRSLNSP+LPL+ AARLAKKAE R IF++ASEE
Sbjct: 1  MGKGVIWATAEDLARNRGRVLSLYRQILRSLNSPDLPLNLAARLAKKAEARAIFVVASEE 60

Query: 61 RSLHNIEDLIDTAEYSLSLLRKGEIPKYIQ 91
          RSLHNI+DLID A YSLSLLRKGEIPKYIQ
Sbjct: 61 RSLHNIDDLIDAAHYSLSLLRKGEIPKYIQ 90

[Close]

BLAST of Lsi09G011040 vs. NCBI nr
Match: gi|661886901|emb|CDP09310.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 155.2 bits (391), Expect = 5.3e-35
Identity = 77/90 (85.56%), Postives = 85/90 (94.44%), Query Frame = 1


Query: 1  MAKGIVWATAEDLARNRGRVLSLYRQILRSLNSPNLPLSFAARLAKKAEVRGIFLLASEE 60
          MAKG++WATAEDLARNRGRVLSLYRQILRSLNSP LPL+ AARL+KKAEVR IF+L SEE
Sbjct: 1  MAKGLIWATAEDLARNRGRVLSLYRQILRSLNSPALPLNLAARLSKKAEVRAIFMLGSEE 60

Query: 61 RSLHNIEDLIDTAEYSLSLLRKGEIPKYIQ 91
          RS+HNIEDLID AEYSLSLLRKGE+PK+IQ
Sbjct: 61 RSIHNIEDLIDAAEYSLSLLRKGEMPKHIQ 90

The following BLAST results are available for this feature:

BLAST of Lsi09G011040 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi09G011040 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LL01_CUCSA	1.1e-39	95.56	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G120390 PE=4 SV=1	[more]
A0A067K530_JATCU	1.8e-37	90.00	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20189 PE=4 SV=1	[more]
M5X1P0_PRUPE	2.8e-35	85.56	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014023mg PE=4 SV=1	[more]
A0A068ULA0_COFCA	3.7e-35	85.56	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00028620001 PE=4 SV=1	[more]
A0A059CAW5_EUCGR	4.8e-35	84.44	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E04248 PE=4 SV=1	[more]

BLAST of Lsi09G011040 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G65032.1	1.3e-26	66.67	unknown protein	[more]

BLAST of Lsi09G011040 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449442323\|ref\|XP_004138931.1\|	1.6e-39	95.56	PREDICTED: uncharacterized protein LOC101207229 [Cucumis sativus]	[more]
gi\|802711209\|ref\|XP_012084603.1\|	2.6e-37	90.00	PREDICTED: uncharacterized protein LOC105643971 [Jatropha curcas]	[more]
gi\|470142952\|ref\|XP_004307153.1\|	2.2e-36	90.91	PREDICTED: uncharacterized protein LOC101295655 [Fragaria vesca subsp. vesca]	[more]
gi\|596012236\|ref\|XP_007218655.1\|	4.1e-35	85.56	hypothetical protein PRUPE_ppa014023mg [Prunus persica]	[more]
gi\|661886901\|emb\|CDP09310.1\|	5.3e-35	85.56	unnamed protein product [Coffea canephora]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G011040.1	Lsi09G011040.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36724	FAMILY NOT NAMED	coord: 1..90 score: 1.5
None	No IPR available	PANTHER	PTHR36724:SF1	SUBFAMILY NOT NAMED	coord: 1..90 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi09G011040	Csa2G120390	Cucumber (Chinese Long) v2	culsiB091
Lsi09G011040	CSPI02G08690	Wild cucumber (PI 183967)	cpilsiB086
Lsi09G011040	Cla010577	Watermelon (97103) v1	lsiwmB040
Lsi09G011040	MELO3C020371	Melon (DHL92) v3.5.1	lsimeB023
Lsi09G011040	ClCG06G008130	Watermelon (Charleston Gray)	lsiwcgB029
Lsi09G011040	MELO3C020371.2	Melon (DHL92) v3.6.1	lsimedB025
Lsi09G011040	Cla97C06G117850	Watermelon (97103) v2	lsiwmbB026
Lsi09G011040	Bhi12G001248	Wax gourd	lsiwgoB007
Lsi09G011040	Cp4.1LG12g00640	Cucurbita pepo (Zucchini)	cpelsiB101
Lsi09G011040	CsaV3_2G011040	Cucumber (Chinese Long) v3	cuclsiB099

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi09G011040	Cucurbita moschata (Rifu)	cmolsiB213
Lsi09G011040	Cucurbita moschata (Rifu)	cmolsiB320
Lsi09G011040	Cucurbita moschata (Rifu)	cmolsiB733
Lsi09G011040	Cucurbita moschata (Rifu)	cmolsiB805
Lsi09G011040	Cucurbita pepo (Zucchini)	cpelsiB252
Lsi09G011040	Cucurbita pepo (Zucchini)	cpelsiB484
Lsi09G011040	Cucurbita pepo (Zucchini)	cpelsiB697
Lsi09G011040	Wild cucumber (PI 183967)	cpilsiB149
Lsi09G011040	Cucumber (Chinese Long) v2	culsiB088
Lsi09G011040	Melon (DHL92) v3.5.1	lsimeB029
Lsi09G011040	Watermelon (Charleston Gray)	lsiwcgB016
Lsi09G011040	Watermelon (97103) v1	lsiwmB017
Lsi09G011040	Cucumber (Gy14) v2	cgyblsiB081
Lsi09G011040	Cucumber (Gy14) v2	cgyblsiB136
Lsi09G011040	Melon (DHL92) v3.6.1	lsimedB032
Lsi09G011040	Silver-seed gourd	carlsiB204
Lsi09G011040	Silver-seed gourd	carlsiB876
Lsi09G011040	Silver-seed gourd	carlsiB980
Lsi09G011040	Cucumber (Chinese Long) v3	cuclsiB163
Lsi09G011040	Watermelon (97103) v2	lsiwmbB015
Lsi09G011040	Wax gourd	lsiwgoB043
Lsi09G011040	Bottle gourd (USVL1VR-Ls)	lsilsiB011
Lsi09G011040	Cucumber (Gy14) v1	cgylsiB412
Lsi09G011040	Cucumber (Gy14) v1	cgylsiB429
Lsi09G011040	Cucurbita maxima (Rimu)	cmalsiB225
Lsi09G011040	Cucurbita maxima (Rimu)	cmalsiB331
Lsi09G011040	Cucurbita maxima (Rimu)	cmalsiB819