Lsi09G010550 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi09G010550
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Auxin-induced protein 5NG4-like protein
Location	chr09 : 16043070 .. 16045027 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTATTTCTTAAAAATTCCATCTGGCACATTAAAATAAGCTAGTTAAGGCAGCAAAATATGTCCATAATAATATAGAAAGTCACCAAATTAAAGATATTTGGTTATTGTAATTAGACAAAGAAACAGCTATTTATAGGTTAAAAACGAAAAAGCTGAAAGAAAAACATTGAAAAGGAATTTTAAGTGTTTGGAGTTTTTTGGAGTTTCCAGTTTGATGAAAATCAAGTTGTTAAGTGGATATTAAAAGCATTTCAAAATTGGATCGATTAACAAAATTTCTACGAAGTGCTTTTATAATGATTACGTTTGCTTTTGTAAGTGAATTTGTATTTTTCATCCTGACGTGGTGGCCATGATCAAATTCCACTTATATGTCCAAATTTTCTTTTCTTTTTTTCTGTTTTTCTTTTAATACATTTCTCCTTTTAACTATTTTCAAATATGGAAAAATGAGTCAAACTATTTAAAAATATAGAAAAAAATTTCAGTCTCAATGATAGATCGCAATAGAATTCTATCGCTCAAGCAAATAAATTTTATCGCTTGAGTGATAGAAAGCGATAGAATTCTATTGCGGTCTATCACTGATAGACAGTAAAAAATTTCTATATTTATAAATAGTTTGATATTTTTTCTGTTTATAGTAATTTTTCTTTTCCTTTCTTACAAAATTTTCTTCAAGTTGAAGGAGATGCAAGACAGTATTTTTAGAATTAATAATTAAGTGACAGCAATAATTTTTACAGAATTACAAATATAGTAAAATCTATGAGTGATAGACTTTATCTTTCATAGATTTTTATCAACAATATACTAATAGACTCCGAGAGTTGAATCTAAATTTTGTCAAATTTTTAAAAATTCTTTTACATTATGCTATATCTATTAACACTTTGGATGAATTTACATTTTTACCTCGTAAAAAAGAAGCTTTGTTATTTGGAGTAAAATTGGTATTAAATGTTTGTAATGAATGGCAGCGTGGTCGGAGGAATGCTGATGGTGGGTGGACTATACATGGTATTATGGGGTAAAAGCAAGGAAATGAGAAAGATAACACAATTAGCTCCCATGGAAAGTATTAAAGAGCAGCAGCTTGGTGGAGGGATAGATTTGGTCATTTCCTCTCCAATTCCATTTCCTAAAACTAATGTAACCAATAATAATAATGCTCCACATTCTAATCCACATTCTAATACCAACAACTAGAAGTTAAGGGTCCGTTTGGATTGACTTTTTAAGTGTTTAAATAAGTACAAAAATGTTTATAAACACTTAGAAAGTCAATCCAAATAAACTCTAAAAGGATGTCCATATTTTTAGCTTTCATACCTCATCTCTTTCAACAATTATTTGGATATCCCATCGTGAGTTTTAGAAAAAGTGTTGCACATCATGTTGAAAAGGTATATATGAATTAAACCATACTTCCCTTCTCCCATTCATCTCTCTTAACCACTCTTAAATTACTTATTTGACCTTTTTTTTATTTTTATTTTTATTTTAAGAAAAAGAGAGGAAAAGTATCTATTTTTCTTTCTTTTCTAGATTAAAGTGATGAGTAAGGAAGTTGGGAACTTCTTGCTAACGTCTATTAATACTTTGAATGAATTTACATTTTTACCCCGTAAAAAAAGAAGCTTTGTTATTTGGGCTAAAATTGGTATTAAATGTTCGTAATGAATGGCAGCGTGGTTGGAGGAATGCTGATGGTGTGTGGATTATACATGGTATTATGGGGTAAAAGCAAAGAAATGAGAAAGATAACACAATTAGCTCCCATGGAAAGTATCGAAGAGCAGCAGCTTGGTGGAGGGATAGATTTGGTCATTTCCTCTTCAACTCCATCTACTACAACTAATATAACCAATAATAATAATGCTCCATATTCCAACAACAACTACTAGAAACTAAGGGCTCGTTTAGATTGACTTTCTAAGTGTTTAAATAAGT

mRNA sequence

ATGAACGTGGTCGGAGGAATGCTGATGGTGGGTGGACTATACATGGTATTATGGGGTAAAAGCAAGGAAATGAGAAAGATAACACAATTAGCTCCCATGGAAAGTATTAAAGAGCAGCAGCTTGGTGGAGGGATAGATTTGGTCATTTCCTCTCCAATTCCATTTCCTAAAACTAATAAAAAGAGAGGAAAAATTAAAGTGATGAGTAAGGAAGTTGGGAACTTCTTGCTAACCGTGGTTGGAGGAATGCTGATGGTGTGTGGATTATACATGGTATTATGGGGTAAAAGCAAAGAAATGAGAAAGATAACACAATTAGCTCCCATGGAAAGTATCGAAGAGCAGCAGCTTGGTGGAGGGATAGATTTGGTCATTTCCTCTTCAACTCCATCTACTACAACTAATATAACCAATAATAATAATGCTCCATATTCCAACAACAACTACTAGAAACTAAGGGCTCGTTTAGATTGACTTTCTAAGTGTTTAAATAAGT

Coding sequence (CDS)

ATGAACGTGGTCGGAGGAATGCTGATGGTGGGTGGACTATACATGGTATTATGGGGTAAAAGCAAGGAAATGAGAAAGATAACACAATTAGCTCCCATGGAAAGTATTAAAGAGCAGCAGCTTGGTGGAGGGATAGATTTGGTCATTTCCTCTCCAATTCCATTTCCTAAAACTAATAAAAAGAGAGGAAAAATTAAAGTGATGAGTAAGGAAGTTGGGAACTTCTTGCTAACCGTGGTTGGAGGAATGCTGATGGTGTGTGGATTATACATGGTATTATGGGGTAAAAGCAAAGAAATGAGAAAGATAACACAATTAGCTCCCATGGAAAGTATCGAAGAGCAGCAGCTTGGTGGAGGGATAGATTTGGTCATTTCCTCTTCAACTCCATCTACTACAACTAATATAACCAATAATAATAATGCTCCATATTCCAACAACAACTACTAG

Protein sequence

MNVVGGMLMVGGLYMVLWGKSKEMRKITQLAPMESIKEQQLGGGIDLVISSPIPFPKTNKKRGKIKVMSKEVGNFLLTVVGGMLMVCGLYMVLWGKSKEMRKITQLAPMESIEEQQLGGGIDLVISSSTPSTTTNITNNNNAPYSNNNY

Homology

[Close]

BLAST of Lsi09G010550 vs. TrEMBL
Match: A0A0A0LLC4_CUCSA (WAT1-related protein OS=Cucumis sativus GN=Csa_2G151030 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 4.4e-17
Identity = 60/82 (73.17%), Postives = 67/82 (81.71%), Query Frame = 1


Query: 75  FLLTVVGGMLMVCGLYMVLWGKSKEMRKITQLAPMESIEE--QQLGG-GIDLVISSS-TP 134
           +L  VVGGMLMVCGLYMVLWGKSKE+RKITQLAPMESIEE  QQLGG GIDLVISS  TP
Sbjct: 311 YLGCVVGGMLMVCGLYMVLWGKSKEIRKITQLAPMESIEEQLQQLGGEGIDLVISSPITP 370

Query: 135 STTTNIT-----NNNNAPYSNN 148
            + T++T     NN+N P+SNN
Sbjct: 371 LSKTHVTNSQHNNNSNVPHSNN 392

[Close]

BLAST of Lsi09G010550 vs. TrEMBL
Match: A0A0L9TM94_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan01g083900 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 8.4e-08
Identity = 55/147 (37.41%), Postives = 78/147 (53.06%), Query Frame = 1


Query: 2   NVVGGMLMVGGLYMVLWGKSKEMRKITQLAPMESIKEQQLGGGIDLVISSPIPFPKTNKK 61
           +V+G  L+V GLYMVLW KSKEM++ T L   E+    +L    ++V+ S      TNK 
Sbjct: 209 SVLGAALIVCGLYMVLWSKSKEMKQQTDLVSSET----ELSSTTEVVVVST-----TNKN 268

Query: 62  RGKIKVMSKEVGNFLLTVVGGMLMVCGLYMVLWGKSKEMRKITQLAPMESIEEQQLGGGI 121
              I V+          V+G  L+VCGLYMVLW KSKE++  T L     + E +L    
Sbjct: 269 ELAITVI----------VLGASLIVCGLYMVLWSKSKEIKPQTDLV----LSETELSTTE 328

Query: 122 DLVISSSTPSTTTNITNNNNAPYSNNN 149
            +V+S++  S       +NN   SN+N
Sbjct: 329 VVVVSANDKSDHV----SNNQVNSNSN 328

[Close]

BLAST of Lsi09G010550 vs. TrEMBL
Match: A0A0B2QYU3_GLYSO (WAT1-related protein OS=Glycine soja GN=glysoja_011302 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.9e-07
Identity = 33/70 (47.14%), Postives = 48/70 (68.57%), Query Frame = 1


Query: 2   NVVGGMLMVGGLYMVLWGKSKEMRKITQLAPMESIKEQQLGGGIDLVISSPIPFPKTNKK 61
           +VVG +L+V GLYMVLWGKSKEM+ ITQL P E+I+E +    + + IS+PI + K ++ 
Sbjct: 320 SVVGAVLIVCGLYMVLWGKSKEMKNITQLVPSETIREAEAIEVVVMSISTPIDYEKCDQN 379

Query: 62  RGKIKVMSKE 72
               + + KE
Sbjct: 380 NQGERNVDKE 389

[Close]

BLAST of Lsi09G010550 vs. TrEMBL
Match: I1KUH3_SOYBN (WAT1-related protein OS=Glycine max GN=GLYMA_08G182900 PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.9e-07
Identity = 33/70 (47.14%), Postives = 48/70 (68.57%), Query Frame = 1


Query: 2   NVVGGMLMVGGLYMVLWGKSKEMRKITQLAPMESIKEQQLGGGIDLVISSPIPFPKTNKK 61
           +VVG +L+V GLYMVLWGKSKEM+ ITQL P E+I+E +    + + IS+PI + K ++ 
Sbjct: 320 SVVGAVLIVCGLYMVLWGKSKEMKNITQLVPSETIREAEAIEVVVMSISTPIDYEKCDQN 379

Query: 62  RGKIKVMSKE 72
               + + KE
Sbjct: 380 NQGERNVDKE 389

[Close]

BLAST of Lsi09G010550 vs. TrEMBL
Match: I1MDS9_SOYBN (WAT1-related protein OS=Glycine max GN=GLYMA_15G049700 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 4.1e-07
Identity = 32/70 (45.71%), Postives = 48/70 (68.57%), Query Frame = 1


Query: 2   NVVGGMLMVGGLYMVLWGKSKEMRKITQLAPMESIKEQQLGGGIDLVISSPIPFPKTNKK 61
           +VVG +L+V GLYMVLWGKSKEM+ ITQL P E+I+E +    + + +S+PI + K ++ 
Sbjct: 320 SVVGAVLIVCGLYMVLWGKSKEMKNITQLVPSETIREAEAIEVVVMPMSTPIDYEKCDQN 379

Query: 62  RGKIKVMSKE 72
               + + KE
Sbjct: 380 NQGERNVDKE 389

[Close]

BLAST of Lsi09G010550 vs. NCBI nr
Match: gi|778674135|ref|XP_004139017.2| (PREDICTED: WAT1-related protein At1g25270-like [Cucumis sativus])

HSP 1 Score: 95.9 bits (237), Expect = 6.3e-17
Identity = 60/82 (73.17%), Postives = 67/82 (81.71%), Query Frame = 1


Query: 75  FLLTVVGGMLMVCGLYMVLWGKSKEMRKITQLAPMESIEE--QQLGG-GIDLVISSS-TP 134
           +L  VVGGMLMVCGLYMVLWGKSKE+RKITQLAPMESIEE  QQLGG GIDLVISS  TP
Sbjct: 313 YLGCVVGGMLMVCGLYMVLWGKSKEIRKITQLAPMESIEEQLQQLGGEGIDLVISSPITP 372

Query: 135 STTTNIT-----NNNNAPYSNN 148
            + T++T     NN+N P+SNN
Sbjct: 373 LSKTHVTNSQHNNNSNVPHSNN 394

[Close]

BLAST of Lsi09G010550 vs. NCBI nr
Match: gi|700206393|gb|KGN61512.1| (hypothetical protein Csa_2G151030 [Cucumis sativus])

HSP 1 Score: 95.9 bits (237), Expect = 6.3e-17
Identity = 60/82 (73.17%), Postives = 67/82 (81.71%), Query Frame = 1


Query: 75  FLLTVVGGMLMVCGLYMVLWGKSKEMRKITQLAPMESIEE--QQLGG-GIDLVISSS-TP 134
           +L  VVGGMLMVCGLYMVLWGKSKE+RKITQLAPMESIEE  QQLGG GIDLVISS  TP
Sbjct: 311 YLGCVVGGMLMVCGLYMVLWGKSKEIRKITQLAPMESIEEQLQQLGGEGIDLVISSPITP 370

Query: 135 STTTNIT-----NNNNAPYSNN 148
            + T++T     NN+N P+SNN
Sbjct: 371 LSKTHVTNSQHNNNSNVPHSNN 392

[Close]

BLAST of Lsi09G010550 vs. NCBI nr
Match: gi|659114878|ref|XP_008457270.1| (PREDICTED: WAT1-related protein At1g25270-like [Cucumis melo])

HSP 1 Score: 88.2 bits (217), Expect = 1.3e-14
Identity = 56/78 (71.79%), Postives = 62/78 (79.49%), Query Frame = 1


Query: 79  VVGGMLMVCGLYMVLWGKSKEMRKITQLAPMESIEE--QQLGG-GIDLVISSS-TPSTTT 138
           VVGGMLMVCGLYMVLWGKSKE+RKITQLAP+ESIE   QQLG  GIDLVIS   TP   T
Sbjct: 315 VVGGMLMVCGLYMVLWGKSKEIRKITQLAPVESIEAQLQQLGSEGIDLVISPPITPLPKT 374

Query: 139 NIT-----NNNNAPYSNN 148
           ++T     NN+NAP+SNN
Sbjct: 375 HVTNNQQHNNSNAPHSNN 392

[Close]

BLAST of Lsi09G010550 vs. NCBI nr
Match: gi|920687301|gb|KOM31284.1| (hypothetical protein LR48_Vigan01g083900 [Vigna angularis])

HSP 1 Score: 65.1 bits (157), Expect = 1.2e-07
Identity = 55/147 (37.41%), Postives = 78/147 (53.06%), Query Frame = 1


Query: 2   NVVGGMLMVGGLYMVLWGKSKEMRKITQLAPMESIKEQQLGGGIDLVISSPIPFPKTNKK 61
           +V+G  L+V GLYMVLW KSKEM++ T L   E+    +L    ++V+ S      TNK 
Sbjct: 209 SVLGAALIVCGLYMVLWSKSKEMKQQTDLVSSET----ELSSTTEVVVVST-----TNKN 268

Query: 62  RGKIKVMSKEVGNFLLTVVGGMLMVCGLYMVLWGKSKEMRKITQLAPMESIEEQQLGGGI 121
              I V+          V+G  L+VCGLYMVLW KSKE++  T L     + E +L    
Sbjct: 269 ELAITVI----------VLGASLIVCGLYMVLWSKSKEIKPQTDLV----LSETELSTTE 328

Query: 122 DLVISSSTPSTTTNITNNNNAPYSNNN 149
            +V+S++  S       +NN   SN+N
Sbjct: 329 VVVVSANDKSDHV----SNNQVNSNSN 328

[Close]

BLAST of Lsi09G010550 vs. NCBI nr
Match: gi|356525918|ref|XP_003531568.1| (PREDICTED: WAT1-related protein At1g68170-like [Glycine max])

HSP 1 Score: 63.9 bits (154), Expect = 2.7e-07
Identity = 33/70 (47.14%), Postives = 48/70 (68.57%), Query Frame = 1


Query: 2   NVVGGMLMVGGLYMVLWGKSKEMRKITQLAPMESIKEQQLGGGIDLVISSPIPFPKTNKK 61
           +VVG +L+V GLYMVLWGKSKEM+ ITQL P E+I+E +    + + IS+PI + K ++ 
Sbjct: 320 SVVGAVLIVCGLYMVLWGKSKEMKNITQLVPSETIREAEAIEVVVMSISTPIDYEKCDQN 379

Query: 62  RGKIKVMSKE 72
               + + KE
Sbjct: 380 NQGERNVDKE 389

The following BLAST results are available for this feature:

BLAST of Lsi09G010550 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi09G010550 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LLC4_CUCSA	4.4e-17	73.17	WAT1-related protein OS=Cucumis sativus GN=Csa_2G151030 PE=3 SV=1	[more]
A0A0L9TM94_PHAAN	8.4e-08	37.41	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan01g083900 PE=4 SV=1	[more]
A0A0B2QYU3_GLYSO	1.9e-07	47.14	WAT1-related protein OS=Glycine soja GN=glysoja_011302 PE=3 SV=1	[more]
I1KUH3_SOYBN	1.9e-07	47.14	WAT1-related protein OS=Glycine max GN=GLYMA_08G182900 PE=3 SV=1	[more]
I1MDS9_SOYBN	4.1e-07	45.71	WAT1-related protein OS=Glycine max GN=GLYMA_15G049700 PE=3 SV=1	[more]

BLAST of Lsi09G010550 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi09G010550 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778674135\|ref\|XP_004139017.2\|	6.3e-17	73.17	PREDICTED: WAT1-related protein At1g25270-like [Cucumis sativus]	[more]
gi\|700206393\|gb\|KGN61512.1\|	6.3e-17	73.17	hypothetical protein Csa_2G151030 [Cucumis sativus]	[more]
gi\|659114878\|ref\|XP_008457270.1\|	1.3e-14	71.79	PREDICTED: WAT1-related protein At1g25270-like [Cucumis melo]	[more]
gi\|920687301\|gb\|KOM31284.1\|	1.2e-07	37.41	hypothetical protein LR48_Vigan01g083900 [Vigna angularis]	[more]
gi\|356525918\|ref\|XP_003531568.1\|	2.7e-07	47.14	PREDICTED: WAT1-related protein At1g68170-like [Glycine max]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0022857	transmembrane transporter activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G010550.1	Lsi09G010550.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi09G010550	MELO3C020414.2	Melon (DHL92) v3.6.1	lsimedB025
Lsi09G010550	Bhi12G001210	Wax gourd	lsiwgoB035

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi09G010550	Cucurbita moschata (Rifu)	cmolsiB251
Lsi09G010550	Cucurbita moschata (Rifu)	cmolsiB616
Lsi09G010550	Cucurbita pepo (Zucchini)	cpelsiB132
Lsi09G010550	Cucurbita pepo (Zucchini)	cpelsiB136
Lsi09G010550	Cucurbita pepo (Zucchini)	cpelsiB316
Lsi09G010550	Melon (DHL92) v3.5.1	lsimeB023
Lsi09G010550	Silver-seed gourd	carlsiB479
Lsi09G010550	Silver-seed gourd	carlsiB755
Lsi09G010550	Wax gourd	lsiwgoB007
Lsi09G010550	Cucurbita maxima (Rimu)	cmalsiB264
Lsi09G010550	Cucurbita maxima (Rimu)	cmalsiB628