Lsi09G010450 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi09G010450
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionPentatricopeptide repeat (PPR-like) superfamily protein
Locationchr09 : 15704656 .. 15707386 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ACCATAGCTAAGGAATTGCGCCACTACGCAACAGTTAGAGCTTTCAGACGAGGCAATGTCATTCATGCTTATTTGAGAAAATTTAACGATGTGTTTCTTGCCAACAATTTGATTTCCATGTATGCGGAGTTTTTATGTACGAGATGCACAGAAGGTGTTTGATGAAATGACTGACAAGAAAATTGTTACTTGGACCACCATGGTTTCTGCATTTACTGATGGTGGAAGACCTAATGAGGCATTCTGAGTGTATAATGATATGCCGAAATCAGAGATACCGAATGGGTAGATGTCCAAGGTACGGCAATCACCTTGTTTTTTCACTTCTAACTCTGCACTCAACCTGATGTTTCCTGCTATGTCTACTTTGATTCTGAAATTTGGGGCGAGCATATTCAATATATAAGACGTAGGTTTATACTAATTTAAACCTCTCTCCTCTCTTGATTTTTTTCTTTTCTCAAAAATGTACATTATGTCTTTCTCCATGAATTCTGTTACGGTTCCCAAATGTTTGATCTGTTGTTAAACTTGAATGATCAAGTTTGTGCACTGGTTTTAGGAAAACTTTTAGTTCCATTATAGTACATACTTCTTCCATTCAATATTTGATATGTTATCAAATGATGTAATATTTTATTTTATAATGTAAGATTTTATTTTATAGACTCCACACTATTCTTAAATGGTTCTTATGGTATTAAACAAAAAAATAATTTTTCATACTAATTACCAACTTAGTACTAGAAACTTTTCCCTGTTTTTGTCATTATAGTTCAACGTGTTATTGGGTCCTTTTCTTGTCATCTCATGTTATTCATTCTACACAATAAAGGGGGGAAAGATGTTTAGGCATCATTCTGCTCCATTAATTATTGAGCTGTTAGACAATGTATGAAGTGGTCTCCTTTTGATTATCTTTTCATCTTTGTTCAAGGACCTATCCTGCCTTGGCAGGAATAACTACATAACATATAGGACGACTCACTATTTATTCAAGAAACTGGAAGGTAGACTAGCTGTTTAGAAATTAGAAGGAAAAAAAAGAGCTTTCTAGAATCTAACAAAATTTCCTGTTCTATATTTAATTTTCAACTTCTTATAGACTTATAGTCATAATATATTGTCGTTAACTTGTTACACAGTGACGAACTGCAATTTCCTGTCAAGTCTTTGATGGCTTCCTCCTATACGGATAATTCTGTTGGTAATTGGTAATGAATGGCCATGGCCAGAGTGGAGGAGGAATATTCAAACTGACATAAAGTGACGATGCCTAAATGATTAATTATGACATTTTGGTCCCAGGGTGTAGATTGATGGTAACATCATTATGGTCCTTGACCCTTGAAATCCTGTTTCAAATGCTCAAAATTTTAGTTGGTTGCCGTTACTTCTTTGTAAATGCTTTAACAATTAAAATCGTTCGACAAGTTATCCACTCATACCACCTCAAGTTAGCATTCTTACGGCAAAATTATATTATCTTTGTAGGCTTCTTTTAGTTGTCAACTGTTGAGTAATTTATCCAATAGTCCACCAATGGAATTCGTAAGTGACCACAACATGATTTACAAGAACAGAAAACAAAGCAATAAGTTGCACTCATTCCCATGGATCCCCTCCCGTTTCAAAAGAAAAAAAAAATGTCAAAGTGTTAGGGTTAAGAGGTCATGGGTTCAATCCATGGTGACCACTTACTTAGTATTTAATATCTTACGTGTTTCTTTGACACCCAAATGTTGTAGGGTCAGGTAGGATGTAAAAAAAAAAAGGAAAAAATATTTTTTAAAAAAAGTCATGTGGCAACTTGATTGAGCATTTGACAGGACTGCATAAATAATGGGTGCAACTGGGACTGCATAAATAATGGGTGCAACTAGGATTGCACCCAAGTATTTTTTTGAAAAAATAAACATTTGGATTTGAATATTGTTCTTTTATACTATGGGGATACAACTTTAAGCCAAAGTGAGCATAGCTTAGCGGTAATCAACATTACTCCTTCCCTCGAGATCTGAGGTTTAAAAGCAGGTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATGCAGGGGGTACAACGCAGTCTCTTGTCTAAGTCAAATTAG

mRNA sequence

ACCATAGCTAAGGAATTGCGCCACTACGCAACAGTTAGAGCTTTCAGACGAGGCAATGTCATTCATGCTTATTTGAGAAAATTTAACGATGTGTTTCTTGCCAACAATTTGATTTCCATGTATGCGGAGTTTTTATGTACGAGATGCACAGAAGACCTAATGAGGCATTCTGAGTGTATAATGATATGCCGAAATCAGAGATACCGAATGGGTAGATGTCCAAGTGACGAACTGCAATTTCCTGTCAAGTCTTTGATGGCTTCCTCCTATACGGATAATTCTGTTGGGTGTAGATTGATGGTAACATCATTATGGTCCTTGACCCTTGAAATCCTGTTTCAAATGCTCAAAATTTTAGTTGGTTGCCGTTACTTCTTTGTAAATGCTTTAACAATTAAAATCGTTCGACAAGCTTCTTTTAGTTGTCAACTGTTGAGTAATTTATCCAATAGTCCACCAATGGAATTCGGGGTACAACGCAGTCTCTTGTCTAAGTCAAATTAG

Coding sequence (CDS)

ACCATAGCTAAGGAATTGCGCCACTACGCAACAGTTAGAGCTTTCAGACGAGGCAATGTCATTCATGCTTATTTGAGAAAATTTAACGATGTGTTTCTTGCCAACAATTTGATTTCCATGTATGCGGAGTTTTTATGTACGAGATGCACAGAAGACCTAATGAGGCATTCTGAGTGTATAATGATATGCCGAAATCAGAGATACCGAATGGGTAGATGTCCAAGTGACGAACTGCAATTTCCTGTCAAGTCTTTGATGGCTTCCTCCTATACGGATAATTCTGTTGGGTGTAGATTGATGGTAACATCATTATGGTCCTTGACCCTTGAAATCCTGTTTCAAATGCTCAAAATTTTAGTTGGTTGCCGTTACTTCTTTGTAAATGCTTTAACAATTAAAATCGTTCGACAAGCTTCTTTTAGTTGTCAACTGTTGAGTAATTTATCCAATAGTCCACCAATGGAATTCGGGGTACAACGCAGTCTCTTGTCTAAGTCAAATTAG

Protein sequence

TIAKELRHYATVRAFRRGNVIHAYLRKFNDVFLANNLISMYAEFLCTRCTEDLMRHSECIMICRNQRYRMGRCPSDELQFPVKSLMASSYTDNSVGCRLMVTSLWSLTLEILFQMLKILVGCRYFFVNALTIKIVRQASFSCQLLSNLSNSPPMEFGVQRSLLSKSN
Homology
[Close]
BLAST of Lsi09G010450 vs. TrEMBL
Match: A0A0A0KRG3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G375260 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.4e-11
Identity = 41/53 (77.36%), Postives = 43/53 (81.13%), Query Frame = 1 

Query: 2  IAKELRHYATVRAFRRGNVIHAYLRKF---NDVFLANNLISMYAEFLCTRCTE 52
          IAK+LRH ATVRAF+RGN IHAYLRKF   NDVFLANNLISMYAEF   R  E
Sbjct: 6  IAKDLRHCATVRAFKRGNAIHAYLRKFGGLNDVFLANNLISMYAEFFNVRDAE 58

[Close]
BLAST of Lsi09G010450 vs. NCBI nr
Match: gi|449445246|ref|XP_004140384.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g08210 isoform X1 [Cucumis sativus])

HSP 1 Score: 77.0 bits (188), Expect = 3.4e-11
Identity = 41/53 (77.36%), Postives = 43/53 (81.13%), Query Frame = 1 

Query: 2  IAKELRHYATVRAFRRGNVIHAYLRKF---NDVFLANNLISMYAEFLCTRCTE 52
          IAK+LRH ATVRAF+RGN IHAYLRKF   NDVFLANNLISMYAEF   R  E
Sbjct: 6  IAKDLRHCATVRAFKRGNAIHAYLRKFGGLNDVFLANNLISMYAEFFNVRDAE 58

The following BLAST results are available for this feature:
BLAST of Lsi09G010450 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi09G010450 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KRG3_CUCSA2.4e-1177.36Uncharacterized protein OS=Cucumis sativus GN=Csa_5G375260 PE=4 SV=1[more]
BLAST of Lsi09G010450 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi09G010450 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449445246|ref|XP_004140384.1|3.4e-1177.36PREDICTED: pentatricopeptide repeat-containing protein At4g08210 isoform X1 [Cuc... [more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi09G010450.1Lsi09G010450.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi09G010450Cucumber (Gy14) v1cgylsiB406
Lsi09G010450Cucurbita maxima (Rimu)cmalsiB264
Lsi09G010450Cucurbita maxima (Rimu)cmalsiB628
Lsi09G010450Cucurbita moschata (Rifu)cmolsiB251
Lsi09G010450Cucurbita moschata (Rifu)cmolsiB616
Lsi09G010450Cucurbita pepo (Zucchini)cpelsiB136
Lsi09G010450Cucurbita pepo (Zucchini)cpelsiB316
Lsi09G010450Wild cucumber (PI 183967)cpilsiB325
Lsi09G010450Cucumber (Chinese Long) v2culsiB326
Lsi09G010450Melon (DHL92) v3.5.1lsimeB007
Lsi09G010450Watermelon (Charleston Gray)lsiwcgB015
Lsi09G010450Watermelon (97103) v1lsiwmB012
Lsi09G010450Cucumber (Gy14) v2cgyblsiB298
Lsi09G010450Melon (DHL92) v3.6.1lsimedB007
Lsi09G010450Silver-seed gourdcarlsiB479
Lsi09G010450Silver-seed gourdcarlsiB755
Lsi09G010450Cucumber (Chinese Long) v3cuclsiB349
Lsi09G010450Watermelon (97103) v2lsiwmbB014
Lsi09G010450Wax gourdlsiwgoB030