Lsi09G010440 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi09G010440
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Ubiquitin-fold modifier 1
Location	chr09 : 15680040 .. 15682864 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATTAATGAAAATATCAAAGCAAGAAGACTTTTTCTCTTTTTTTTCAGTTGATCTTATGTTTGGCTAAATTCATACAAGAATCTCCTCCAAAATCAACGAGGTTCAACCTTCACCACATCACAGAGCTCGAAAATGGCGGGTGCTGGTGGCGGAAAGGTCTCCTTCAAAGTCACTCTCACCTCAGACCCCAAGCTCCCTTTCAAAGTGTTTGTAATCTTAAACCCTTGATTTTTTTCGCTCCTAGGGTTTTCCCTTTTCTGTCCTCAGTACTACAAAGATCCGATCTCATCGTTTTTTCAATTTCTTTGACGCTCAGGTTTAGTGTTCCAGAGGCCGCGCCCTTCACCGCAGTCCTCAAATTTGCCGCTGAAGAATTCAAGGTGCCCCCGCAAACCAGCGCCATCATCACCAATGGTAATTGATTGCCTCCGTTTTGATCTGTTCGTTGAGTTTTGATTCGATTGTGATTGGAATTTGCATGCGTGAAATTTCTTTTGTAATTAACAATTTTGGATCTGCCGATCGCCGATACGTGTGGTTTTAGAAATGAAAATTGGTGTTGAGTTCCTTAAGAGATGGTAGGCGTGCCTTCAATTGCACGATGCGTAAAATCTTGTTTTTTTTTTTTCAGAAACGAGTATTAGTAATTGGATGTGTGGAGATTAGGTCAGTGTTAGTTTTGGAGCCGCAATTCTTTTTCCTCTAACCAGGAAAGTAACTAAAAGTTAAACCGTGAAGCCTTCTCTGTCAACTTTAATTGCTTGTGATTGTCCTTTCTTTTCTTATGATAAGTTTGGGTTGTTTCCGATTGGAAAATAAAAATTGTTCTTGAACGTGCCCACATTACTTCATTGATGGAGGTTGTCCACCATCATCTTTTGTATTCAAGATATATAACTATAGCTGATTTGGATTTTATCGGTCTCAAGATTTGAGTATCAGGAAGATTGTCAGACAGTAGTTTAATATGAGAAAAATTGGATGTCATCATTAAAACTACTACGTGTTTGGAGATGATTGTTGTTATTATGCTATAGGTAATCCTTGATGTTAGTTGAACTTGCCTACATTGTGCCCTCATATCTTTGATCCCTCATGAGATGTACTTGTGATTTTCTTTTTTGGTTTTTATGTCAGAGAGAGTCATCTTCATGCTAGTTTCCACTAATATGGAAGCAAAAATCCCTAGGATTTTCTTCCCAGATGAAGAAAAACTAATCCCTCTGAACTGAGATAATTTGCAATTGTTGAATGCTTGAGCTAATTATGTGCAGCTTTTTCATGATTTTACTGATATCTTATGATAGAAGAAGGGTCAGAGATTGTGCTTTAGAATTCGTAAACTATGACATATGGACAGTGGTCGTGTTTATGTTGTTGCTAGTCATTTTAATATTTGATAGAAATGACATTGTTAGATGAGAGATGCTTTGTGGATCCTCATATGCCATAGATTTTTCCTTGGATTCAAATTGCACATGTGCTTTTAGATGCTCTGATATTATGTTCCATTCCAGTCATTTAGCCTCTCATTTTATGTGTCTGTCTAACTTTGATCAATGATTCGCAGATGGCGTTGGAATAAATCCTCAACAAAGTGCTGGTAAGCTGATTGATGGTCTTATTCTTAAGCTCTACAATTTATTGCGTCCTTGCTTCTGTTCTGGTCATTTTTCATGTTATTGAAGCATCCCAACTATAGAAGCATATGCTGACTCCAAAAAAAAAAAAACTATAGAAGCATATTGCTGAACTGCATAATGTGGGGGGAAAACTTCTGTTCTGTGTCCATATAAGGACGGAGGGGATTCTTTAACTGGTGACGGGTTGGAATTTTCCTGTGATAGAATGCCGCCATTTCACTGAAACGGACACTGAACTATTGACATTGTTTTCTACTACACATTTGAAATGTTTAGTACCCTTTGAAAATCAAAATCTGATTTCATCGTAGACATCCTGCGATAGTGTTTCCTCTAGCATGAGATACAATTTGGGGTGGAGCTAGTAAGTTTGTGTTTGGGTATAGAGTTGTGAGATGGAGTTCTTCGATAATTGTGGAAAGTAGATTAAGAGAAGATGATGAAGTTATTCGATAAATGTGAAAATTAGAGTTAGATGGGAAGATGAAGCTTCTTGATAAATGTGAAAAGTAGAAAAAGATGAAAAGATGAAGTTACTCGATAAATGTGCAAACTTCAATTGTGTTTACTATTGAAGTTGAGTTGTTTACACCAACTTAAGAAGTGTATTTTAATTTAAAATACTAACCTTTTTTTGATATTGCTATTTATACATACATATTCGTACGAGTAAACAACCTACAACTTTTGAATGAGATTCATTTCATAATTCCATGAAGCTTGAGGCCATATTATTCCATTTGGAGTTGAAATTTATGGTTGGATGTGCTTTTTGCAGGCAATGTCTTCCTCAAGCATGGCTCTGAACTACGCCTGATTCCTCGCGATAGGGTTGGAGCTGCCTGATCTCTCTGTGAATGTAAACTACAATCCCTTTGTCTACTCGCCTTAGTTAACTGGCTTAATTTGCAATTGTCAAGCTGGGAGAATTTCATACTTGTTCATCACATTATTGTAACTGATTGATGTCCTGCTTAATTAAATAAATGAGCCTCCTTATTTCGGGGCACTCTTTTTAATCATTTTAAACTTGGACAAAGTTACATAGTTGGAGACCAAATTTTAGTTTTAAAGCCTAGTCAGGATATCATTTTTTTTTTCTTTCTCCGCTAGATATGTGGAAATTGTTCCTTATTTTTCTAAAAATTTGGCCAGGTAAATTTGATTATGAGGAATTTTGC

mRNA sequence

TATTAATGAAAATATCAAAGCAAGAAGACTTTTTCTCTTTTTTTTCAGTTGATCTTATGTTTGGCTAAATTCATACAAGAATCTCCTCCAAAATCAACGAGGTTCAACCTTCACCACATCACAGAGCTCGAAAATGGCGGGTGCTGGTGGCGGAAAGGTCTCCTTCAAAGTCACTCTCACCTCAGACCCCAAGCTCCCTTTCAAAGTGTTTAGTGTTCCAGAGGCCGCGCCCTTCACCGCAGTCCTCAAATTTGCCGCTGAAGAATTCAAGGTGCCCCCGCAAACCAGCGCCATCATCACCAATGATGGCGTTGGAATAAATCCTCAACAAAGTGCTGGTAAGCTGATTGATGGTCTTATTCTTAAGCTCTACAATTTATTGCGTCCTTGCTTCTGTTCTGGCAATGTCTTCCTCAAGCATGGCTCTGAACTACGCCTGATTCCTCGCGATAGGGTTGGAGCTGCCTGATCTCTCTGTGAATGTAAACTACAATCCCTTTGTCTACTCGCCTTAGTTAACTGGCTTAATTTGCAATTGTCAAGCTGGGAGAATTTCATACTTGTTCATCACATTATTGTAACTGATTGATGTCCTGCTTAATTAAATAAATGAGCCTCCTTATTTCGGGGCACTCTTTTTAATCATTTTAAACTTGGACAAAGTTACATAGTTGGAGACCAAATTTTAGTTTTAAAGCCTAGTCAGGATATCATTTTTTTTTTCTTTCTCCGCTAGATATGTGGAAATTGTTCCTTATTTTTCTAAAAATTTGGCCAGGTAAATTTGATTATGAGGAATTTTGC

Coding sequence (CDS)

ATGGCGGGTGCTGGTGGCGGAAAGGTCTCCTTCAAAGTCACTCTCACCTCAGACCCCAAGCTCCCTTTCAAAGTGTTTAGTGTTCCAGAGGCCGCGCCCTTCACCGCAGTCCTCAAATTTGCCGCTGAAGAATTCAAGGTGCCCCCGCAAACCAGCGCCATCATCACCAATGATGGCGTTGGAATAAATCCTCAACAAAGTGCTGGTAAGCTGATTGATGGTCTTATTCTTAAGCTCTACAATTTATTGCGTCCTTGCTTCTGTTCTGGCAATGTCTTCCTCAAGCATGGCTCTGAACTACGCCTGATTCCTCGCGATAGGGTTGGAGCTGCCTGA

Protein sequence

MAGAGGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQSAGKLIDGLILKLYNLLRPCFCSGNVFLKHGSELRLIPRDRVGAA

Homology

[Close]

BLAST of Lsi09G010440 vs. Swiss-Prot
Match: UFM1_ORYSJ (Ubiquitin-fold modifier 1 OS=Oryza sativa subsp. japonica GN=Os01g0962400 PE=3 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 4.9e-38
Identity = 84/107 (78.50%), Postives = 85/107 (79.44%), Query Frame = 1


Query: 4   AGGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGIN 63
           AGGGKVSFK+ LTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGIN
Sbjct: 12  AGGGKVSFKIILTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGIN 71

Query: 64  PQQSAGKLIDGLILKLYNLLRPCFCSGNVFLKHGSELRLIPRDRVGA 111
           PQQSA                     GNVFLKHGSELRLIPRDRVGA
Sbjct: 72  PQQSA---------------------GNVFLKHGSELRLIPRDRVGA 97

[Close]

BLAST of Lsi09G010440 vs. Swiss-Prot
Match: UFM1_ARATH (Ubiquitin-fold modifier 1 OS=Arabidopsis thaliana GN=At1g77710 PE=3 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 2.4e-37
Identity = 83/107 (77.57%), Postives = 84/107 (78.50%), Query Frame = 1


Query: 4   AGGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGIN 63
           A GGKVSFKVTLTSDPKLPFKVFSVPE APFTAVLKFAAEEFKVPPQTSAIITNDG+GIN
Sbjct: 2   ATGGKVSFKVTLTSDPKLPFKVFSVPEGAPFTAVLKFAAEEFKVPPQTSAIITNDGIGIN 61

Query: 64  PQQSAGKLIDGLILKLYNLLRPCFCSGNVFLKHGSELRLIPRDRVGA 111
           PQQSA                     GNVFLKHGSELRLIPRDRVGA
Sbjct: 62  PQQSA---------------------GNVFLKHGSELRLIPRDRVGA 87

[Close]

BLAST of Lsi09G010440 vs. Swiss-Prot
Match: UFM1_CHLIN (Ubiquitin-fold modifier 1 OS=Chlamydomonas incerta GN=PR46a PE=3 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 1.6e-33
Identity = 77/107 (71.96%), Postives = 81/107 (75.70%), Query Frame = 1


Query: 5   GGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINP 64
           G  KV+FKVTLTSDPKLPF+VFSVPE APFTAVLKFAAEEFKVP QTSAIITNDGVGINP
Sbjct: 10  GVTKVTFKVTLTSDPKLPFRVFSVPEEAPFTAVLKFAAEEFKVPAQTSAIITNDGVGINP 69

Query: 65  QQSAGKLIDGLILKLYNLLRPCFCSGNVFLKHGSELRLIPRDRVGAA 112
           QQ+A                     GNVFLKHGSELRLIPRDRVG +
Sbjct: 70  QQTA---------------------GNVFLKHGSELRLIPRDRVGGS 95

[Close]

BLAST of Lsi09G010440 vs. Swiss-Prot
Match: UFM1_CHLRE (Ubiquitin-fold modifier 1 OS=Chlamydomonas reinhardtii GN=PR46a PE=3 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 4.7e-33
Identity = 76/102 (74.51%), Postives = 78/102 (76.47%), Query Frame = 1


Query: 8   KVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQS 67
           KV+FKVTLTSDPKLPF+VFSVPE APFTAVLKFAAEEFKVP QTSAIITNDGVGINPQQ 
Sbjct: 10  KVTFKVTLTSDPKLPFRVFSVPEEAPFTAVLKFAAEEFKVPAQTSAIITNDGVGINPQQI 69

Query: 68  AGKLIDGLILKLYNLLRPCFCSGNVFLKHGSELRLIPRDRVG 110
           A                     GNVFLKHGSELRLIPRDRVG
Sbjct: 70  A---------------------GNVFLKHGSELRLIPRDRVG 90

[Close]

BLAST of Lsi09G010440 vs. Swiss-Prot
Match: UFM1_AEDAE (Ubiquitin-fold modifier 1 OS=Aedes aegypti GN=AAEL006251 PE=3 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 1.0e-32
Identity = 73/103 (70.87%), Postives = 79/103 (76.70%), Query Frame = 1


Query: 8   KVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGINPQQS 67
           KV+FK+TLTSDPKLPFKV SVPEA PFTAVLKFAAEEFKVPP TSAIIT+DG+GINPQQ+
Sbjct: 4   KVTFKITLTSDPKLPFKVLSVPEATPFTAVLKFAAEEFKVPPATSAIITDDGIGINPQQT 63

Query: 68  AGKLIDGLILKLYNLLRPCFCSGNVFLKHGSELRLIPRDRVGA 111
           A                     GNVFLKHGSELRLIPRDRVG+
Sbjct: 64  A---------------------GNVFLKHGSELRLIPRDRVGS 85

[Close]

BLAST of Lsi09G010440 vs. TrEMBL
Match: A0A0A0KTD7_CUCSA (Ubiquitin-fold modifier 1 OS=Cucumis sativus GN=Csa_5G374760 PE=3 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 5.2e-39
Identity = 90/111 (81.08%), Postives = 90/111 (81.08%), Query Frame = 1


Query: 1   MAGAGGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGV 60
           MAGAGGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGV
Sbjct: 1   MAGAGGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGV 60

Query: 61  GINPQQSAGKLIDGLILKLYNLLRPCFCSGNVFLKHGSELRLIPRDRVGAA 112
           GINPQQSA                     GNVFLKHGSELRLIPRDRVGAA
Sbjct: 61  GINPQQSA---------------------GNVFLKHGSELRLIPRDRVGAA 90

[Close]

BLAST of Lsi09G010440 vs. TrEMBL
Match: A0A059BWF1_EUCGR (Ubiquitin-fold modifier 1 OS=Eucalyptus grandis GN=EUGRSUZ_F03755 PE=3 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 4.9e-37
Identity = 86/108 (79.63%), Postives = 86/108 (79.63%), Query Frame = 1


Query: 3   GAGGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGI 62
           G GGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGI
Sbjct: 10  GGGGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGI 69

Query: 63  NPQQSAGKLIDGLILKLYNLLRPCFCSGNVFLKHGSELRLIPRDRVGA 111
           NPQQSA                     GNVFLKHGSELRLIPRDRVGA
Sbjct: 70  NPQQSA---------------------GNVFLKHGSELRLIPRDRVGA 96

[Close]

BLAST of Lsi09G010440 vs. TrEMBL
Match: A0A151R254_CAJCA (Ubiquitin-fold modifier 1 OS=Cajanus cajan GN=KK1_042292 PE=3 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 6.4e-37
Identity = 86/108 (79.63%), Postives = 87/108 (80.56%), Query Frame = 1


Query: 4   AGGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGIN 63
           AGGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGIN
Sbjct: 2   AGGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGIN 61

Query: 64  PQQSAGKLIDGLILKLYNLLRPCFCSGNVFLKHGSELRLIPRDRVGAA 112
           PQQSA                     GNVFLKHGSELRLIPRDRVGA+
Sbjct: 62  PQQSA---------------------GNVFLKHGSELRLIPRDRVGAS 88

[Close]

BLAST of Lsi09G010440 vs. TrEMBL
Match: A9PC65_POPTR (Ubiquitin-fold modifier 1 OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 6.4e-37
Identity = 86/110 (78.18%), Postives = 87/110 (79.09%), Query Frame = 1


Query: 2   AGAGGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVG 61
           A  GGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVG
Sbjct: 7   AAGGGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVG 66

Query: 62  INPQQSAGKLIDGLILKLYNLLRPCFCSGNVFLKHGSELRLIPRDRVGAA 112
           INPQQSA                     GNVFLKHGSELRLIPRDRVGA+
Sbjct: 67  INPQQSA---------------------GNVFLKHGSELRLIPRDRVGAS 95

[Close]

BLAST of Lsi09G010440 vs. TrEMBL
Match: A0A0S3RDI0_PHAAN (Ubiquitin-fold modifier 1 OS=Vigna angularis var. angularis GN=Vigan.02G129000 PE=3 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 8.3e-37
Identity = 86/107 (80.37%), Postives = 86/107 (80.37%), Query Frame = 1


Query: 4   AGGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGIN 63
           AGGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGIN
Sbjct: 2   AGGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGIN 61

Query: 64  PQQSAGKLIDGLILKLYNLLRPCFCSGNVFLKHGSELRLIPRDRVGA 111
           PQQSA                     GNVFLKHGSELRLIPRDRVGA
Sbjct: 62  PQQSA---------------------GNVFLKHGSELRLIPRDRVGA 87

[Close]

BLAST of Lsi09G010440 vs. TAIR10
Match: AT1G77710.1 (AT1G77710.1 Ubiquitin-like, Ufm1 (InterPro:IPR005375))

HSP 1 Score: 156.0 bits (393), Expect = 1.4e-38
Identity = 83/107 (77.57%), Postives = 84/107 (78.50%), Query Frame = 1


Query: 4   AGGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGIN 63
           A GGKVSFKVTLTSDPKLPFKVFSVPE APFTAVLKFAAEEFKVPPQTSAIITNDG+GIN
Sbjct: 2   ATGGKVSFKVTLTSDPKLPFKVFSVPEGAPFTAVLKFAAEEFKVPPQTSAIITNDGIGIN 61

Query: 64  PQQSAGKLIDGLILKLYNLLRPCFCSGNVFLKHGSELRLIPRDRVGA 111
           PQQSA                     GNVFLKHGSELRLIPRDRVGA
Sbjct: 62  PQQSA---------------------GNVFLKHGSELRLIPRDRVGA 87

[Close]

BLAST of Lsi09G010440 vs. NCBI nr
Match: gi|449445140|ref|XP_004140331.1| (PREDICTED: ubiquitin-fold modifier 1 [Cucumis sativus])

HSP 1 Score: 168.3 bits (425), Expect = 7.5e-39
Identity = 90/111 (81.08%), Postives = 90/111 (81.08%), Query Frame = 1


Query: 1   MAGAGGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGV 60
           MAGAGGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGV
Sbjct: 1   MAGAGGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGV 60

Query: 61  GINPQQSAGKLIDGLILKLYNLLRPCFCSGNVFLKHGSELRLIPRDRVGAA 112
           GINPQQSA                     GNVFLKHGSELRLIPRDRVGAA
Sbjct: 61  GINPQQSA---------------------GNVFLKHGSELRLIPRDRVGAA 90

[Close]

BLAST of Lsi09G010440 vs. NCBI nr
Match: gi|747057165|ref|XP_011074872.1| (PREDICTED: ubiquitin-fold modifier 1-like [Sesamum indicum])

HSP 1 Score: 162.2 bits (409), Expect = 5.4e-37
Identity = 86/108 (79.63%), Postives = 87/108 (80.56%), Query Frame = 1


Query: 3   GAGGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGI 62
           GAGGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGI
Sbjct: 32  GAGGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGI 91

Query: 63  NPQQSAGKLIDGLILKLYNLLRPCFCSGNVFLKHGSELRLIPRDRVGA 111
           NPQQSA                     GNVFLKHGSELRLIPRDRVG+
Sbjct: 92  NPQQSA---------------------GNVFLKHGSELRLIPRDRVGS 118

[Close]

BLAST of Lsi09G010440 vs. NCBI nr
Match: gi|702379978|ref|XP_010063353.1| (PREDICTED: ubiquitin-fold modifier 1 [Eucalyptus grandis])

HSP 1 Score: 161.8 bits (408), Expect = 7.0e-37
Identity = 86/108 (79.63%), Postives = 86/108 (79.63%), Query Frame = 1


Query: 3   GAGGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGI 62
           G GGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGI
Sbjct: 10  GGGGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGI 69

Query: 63  NPQQSAGKLIDGLILKLYNLLRPCFCSGNVFLKHGSELRLIPRDRVGA 111
           NPQQSA                     GNVFLKHGSELRLIPRDRVGA
Sbjct: 70  NPQQSA---------------------GNVFLKHGSELRLIPRDRVGA 96

[Close]

BLAST of Lsi09G010440 vs. NCBI nr
Match: gi|697112351|ref|XP_009610052.1| (PREDICTED: ubiquitin-fold modifier 1-like [Nicotiana tomentosiformis])

HSP 1 Score: 161.8 bits (408), Expect = 7.0e-37
Identity = 86/109 (78.90%), Postives = 87/109 (79.82%), Query Frame = 1


Query: 2   AGAGGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVG 61
           +G GGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVG
Sbjct: 3   SGGGGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVG 62

Query: 62  INPQQSAGKLIDGLILKLYNLLRPCFCSGNVFLKHGSELRLIPRDRVGA 111
           INPQQSA                     GNVFLKHGSELRLIPRDRVGA
Sbjct: 63  INPQQSA---------------------GNVFLKHGSELRLIPRDRVGA 90

[Close]

BLAST of Lsi09G010440 vs. NCBI nr
Match: gi|747046120|ref|XP_011097797.1| (PREDICTED: ubiquitin-fold modifier 1 [Sesamum indicum])

HSP 1 Score: 161.8 bits (408), Expect = 7.0e-37
Identity = 86/108 (79.63%), Postives = 86/108 (79.63%), Query Frame = 1


Query: 3   GAGGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGI 62
           G GGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGI
Sbjct: 9   GGGGGKVSFKVTLTSDPKLPFKVFSVPEAAPFTAVLKFAAEEFKVPPQTSAIITNDGVGI 68

Query: 63  NPQQSAGKLIDGLILKLYNLLRPCFCSGNVFLKHGSELRLIPRDRVGA 111
           NPQQSA                     GNVFLKHGSELRLIPRDRVGA
Sbjct: 69  NPQQSA---------------------GNVFLKHGSELRLIPRDRVGA 95

The following BLAST results are available for this feature:

BLAST of Lsi09G010440 vs. Swiss-Prot


Match Name	E-value	Identity	Description
UFM1_ORYSJ	4.9e-38	78.50	Ubiquitin-fold modifier 1 OS=Oryza sativa subsp. japonica GN=Os01g0962400 PE=3 S...	[more]
UFM1_ARATH	2.4e-37	77.57	Ubiquitin-fold modifier 1 OS=Arabidopsis thaliana GN=At1g77710 PE=3 SV=1	[more]
UFM1_CHLIN	1.6e-33	71.96	Ubiquitin-fold modifier 1 OS=Chlamydomonas incerta GN=PR46a PE=3 SV=1	[more]
UFM1_CHLRE	4.7e-33	74.51	Ubiquitin-fold modifier 1 OS=Chlamydomonas reinhardtii GN=PR46a PE=3 SV=1	[more]
UFM1_AEDAE	1.0e-32	70.87	Ubiquitin-fold modifier 1 OS=Aedes aegypti GN=AAEL006251 PE=3 SV=1	[more]

BLAST of Lsi09G010440 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KTD7_CUCSA	5.2e-39	81.08	Ubiquitin-fold modifier 1 OS=Cucumis sativus GN=Csa_5G374760 PE=3 SV=1	[more]
A0A059BWF1_EUCGR	4.9e-37	79.63	Ubiquitin-fold modifier 1 OS=Eucalyptus grandis GN=EUGRSUZ_F03755 PE=3 SV=1	[more]
A0A151R254_CAJCA	6.4e-37	79.63	Ubiquitin-fold modifier 1 OS=Cajanus cajan GN=KK1_042292 PE=3 SV=1	[more]
A9PC65_POPTR	6.4e-37	78.18	Ubiquitin-fold modifier 1 OS=Populus trichocarpa PE=2 SV=1	[more]
A0A0S3RDI0_PHAAN	8.3e-37	80.37	Ubiquitin-fold modifier 1 OS=Vigna angularis var. angularis GN=Vigan.02G129000 P...	[more]

BLAST of Lsi09G010440 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G77710.1	1.4e-38	77.57	Ubiquitin-like, Ufm1 (InterPro:IPR005375)	[more]

BLAST of Lsi09G010440 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449445140\|ref\|XP_004140331.1\|	7.5e-39	81.08	PREDICTED: ubiquitin-fold modifier 1 [Cucumis sativus]	[more]
gi\|747057165\|ref\|XP_011074872.1\|	5.4e-37	79.63	PREDICTED: ubiquitin-fold modifier 1-like [Sesamum indicum]	[more]
gi\|702379978\|ref\|XP_010063353.1\|	7.0e-37	79.63	PREDICTED: ubiquitin-fold modifier 1 [Eucalyptus grandis]	[more]
gi\|697112351\|ref\|XP_009610052.1\|	7.0e-37	78.90	PREDICTED: ubiquitin-fold modifier 1-like [Nicotiana tomentosiformis]	[more]
gi\|747046120\|ref\|XP_011097797.1\|	7.0e-37	79.63	PREDICTED: ubiquitin-fold modifier 1 [Sesamum indicum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005375	UFM1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006661	phosphatidylinositol biosynthetic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G010440.1	Lsi09G010440.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005375	Ubiquitin-fold modifier 1	PFAM	PF03671	Ufm1	coord: 8..71 score: 6.3
None	No IPR available	GENE3D	G3DSA:3.10.20.90		coord: 7..71 score: 4.2E-37coord: 87..110 score: 2.
None	No IPR available	PANTHER	PTHR15825	FAMILY NOT NAMED	coord: 1..69 score: 4.5E-68coord: 91..111 score: 4.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi09G010440	Csa5G374760	Cucumber (Chinese Long) v2	culsiB326
Lsi09G010440	CSPI05G14140	Wild cucumber (PI 183967)	cpilsiB325
Lsi09G010440	Cucsa.248520	Cucumber (Gy14) v1	cgylsiB406
Lsi09G010440	CmaCh15G006980	Cucurbita maxima (Rimu)	cmalsiB264
Lsi09G010440	CmoCh04G024510	Cucurbita moschata (Rifu)	cmolsiB616
Lsi09G010440	CmoCh15G007140	Cucurbita moschata (Rifu)	cmolsiB251
Lsi09G010440	Cla002801	Watermelon (97103) v1	lsiwmB012
Lsi09G010440	MELO3C003038	Melon (DHL92) v3.5.1	lsimeB007
Lsi09G010440	ClCG03G009400	Watermelon (Charleston Gray)	lsiwcgB015
Lsi09G010440	MELO3C003038.2	Melon (DHL92) v3.6.1	lsimedB007
Lsi09G010440	Cla97C03G060560	Watermelon (97103) v2	lsiwmbB014
Lsi09G010440	Bhi12G001144	Wax gourd	lsiwgoB030
Lsi09G010440	Cp4.1LG13g04700	Cucurbita pepo (Zucchini)	cpelsiB136
Lsi09G010440	Carg01509	Silver-seed gourd	carlsiB755
Lsi09G010440	CsaV3_5G023210	Cucumber (Chinese Long) v3	cuclsiB349

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi09G010440	Cucumber (Gy14) v2	cgyblsiB298
Lsi09G010440	Silver-seed gourd	carlsiB479
Lsi09G010440	Cucurbita maxima (Rimu)	cmalsiB628
Lsi09G010440	Cucurbita pepo (Zucchini)	cpelsiB316