Lsi09G010170 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi09G010170
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionRetrotransposon protein, putative, Ty3-gypsy subclass
Locationchr09 : 14056451 .. 14056899 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ACAGTGTTAATTTGTGATTCATCTATATATGTGTTGATTGATTCTGGTTCTACGCATTCCTTTATATCTACTAGGAATGCTGAAATGTTAAGTATGAAACTAGAATTTTTGAGTGGTGACTTAGTAGTTAGTACCCCTATGGGAGATGTCTTAATAGCTGATTTAGTATGTAAGAATGGTGAAGTAAAGCTAAGAGATGCATGTATGCTAATTGATTTGATTCTGTTAGAACTTCATGAGTTTGATGTGATTTTGGGTATGGATTTCCTGACTAAATATCATGCTACTATGGATTGTTATAATAATGAGGTAGTCTTTAGAAAACAAGGGACGACTGAAGTTGTGTTTAAGGGTGATAGAAAAGCGGTGTCTGCACGCTTGATATCATCTATTAAGGTAGGGAAGATGTTGACCAAAGGATGTATAGCGTACCTAGCTTATGTAGTTGA

mRNA sequence

ACAGTGTTAATTTGTGATTCATCTATATATGTGTTGATTGATTCTGGTTCTACGCATTCCTTTATATCTACTAGGAATGCTGAAATGTTAAGTATGAAACTAGAATTTTTGAGTGGTGACTTAGTAGTTAGTACCCCTATGGGAGATGTCTTAATAGCTGATTTAGTATGTAAGAATGGTGAAGTAAAGCTAAGAGATGCATGTATGCTAATTGATTTGATTCTGTTAGAACTTCATGAGTTTGATGTGATTTTGGGTAGGGAAGATGTTGACCAAAGGATGTATAGCGTACCTAGCTTATGTAGTTGA

Coding sequence (CDS)

ACAGTGTTAATTTGTGATTCATCTATATATGTGTTGATTGATTCTGGTTCTACGCATTCCTTTATATCTACTAGGAATGCTGAAATGTTAAGTATGAAACTAGAATTTTTGAGTGGTGACTTAGTAGTTAGTACCCCTATGGGAGATGTCTTAATAGCTGATTTAGTATGTAAGAATGGTGAAGTAAAGCTAAGAGATGCATGTATGCTAATTGATTTGATTCTGTTAGAACTTCATGAGTTTGATGTGATTTTGGGTAGGGAAGATGTTGACCAAAGGATGTATAGCGTACCTAGCTTATGTAGTTGA

Protein sequence

TVLICDSSIYVLIDSGSTHSFISTRNAEMLSMKLEFLSGDLVVSTPMGDVLIADLVCKNGEVKLRDACMLIDLILLELHEFDVILGREDVDQRMYSVPSLCS
Homology
[Close]
BLAST of Lsi09G010170 vs. TrEMBL
Match: A5C9U3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010121 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 8.0e-10
Identity = 36/78 (46.15%), Postives = 54/78 (69.23%), Query Frame = 1 

Query: 11  VLIDSGSTHSFISTRNAEMLSMKLEFLSGDLVVSTPMGDVLIADLVCKNGEVKLRDACML 70
           VLID GSTHSF+S   A +L + +  +  DL+V+TP+GD ++A  + +N  V +    ML
Sbjct: 97  VLIDPGSTHSFVSVSFAGLLGLPVASMDFDLIVATPVGDFVVASRMLRNCIVMIGYREML 156

Query: 71  IDLILLELHEFDVILGRE 89
           +DL+LL+L +FDVILG +
Sbjct: 157 VDLVLLDLQDFDVILGMD 174

[Close]
BLAST of Lsi09G010170 vs. TrEMBL
Match: A0A022QVU9_ERYGU (Uncharacterized protein (Fragment) OS=Erythranthe guttata GN=MIMGU_mgv1a024293mg PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.4e-08
Identity = 35/88 (39.77%), Postives = 56/88 (63.64%), Query Frame = 1 

Query: 1   TVLICDSSIYVLIDSGSTHSFISTRNAEMLSMKLEFLSGDLVVSTPMGDVLIADLVCKNG 60
           T L+ +S   VLID+G++HSFIS   A  L +K+E L   L + TP+   +    +C++ 
Sbjct: 437 TFLVFNSWASVLIDTGASHSFISLAFALSLGLKIEALDVPLCIDTPVSGGVTLREICRSC 496

Query: 61  EVKLRDACMLIDLILLELHEFDVILGRE 89
           E+K+ D  ++ DLI+L++  FDVILG +
Sbjct: 497 EIKIADHSLVFDLIILDMVSFDVILGMD 524

[Close]
BLAST of Lsi09G010170 vs. TrEMBL
Match: A0A151S8Y8_CAJCA (Retrotransposable element Tf2 OS=Cajanus cajan GN=KK1_026936 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 7.5e-08
Identity = 36/88 (40.91%), Postives = 49/88 (55.68%), Query Frame = 1 

Query: 1   TVLICDSSIYVLIDSGSTHSFISTRNAEMLSMKLEFLSGDLVVSTPMGDVLIADLVCKNG 60
           T  I ++   VL DSG+THSFIS    + L++ +  L  DLVV TP    +   LVC   
Sbjct: 296 TCFIAETPFVVLFDSGATHSFISVSCVQKLNLPVSLLDFDLVVETPTNGPVTTSLVCLKC 355

Query: 61  EVKLRDACMLIDLILLELHEFDVILGRE 89
            + + D   L+DLI L L + DVILG +
Sbjct: 356 PLTVSDKQFLVDLICLPLSQLDVILGMD 383

[Close]
BLAST of Lsi09G010170 vs. TrEMBL
Match: A0A151TRJ7_CAJCA (Transposon Ty3-G Gag-Pol polyprotein OS=Cajanus cajan GN=KK1_008879 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 7.5e-08
Identity = 36/88 (40.91%), Postives = 49/88 (55.68%), Query Frame = 1 

Query: 1   TVLICDSSIYVLIDSGSTHSFISTRNAEMLSMKLEFLSGDLVVSTPMGDVLIADLVCKNG 60
           T  I ++   VL DSG+THSFIS    + L++ +  L  DLVV TP    +   LVC   
Sbjct: 296 TCFIAETPFVVLFDSGATHSFISVSCVQKLNLPVSLLDFDLVVETPTNGPVTTSLVCLKC 355

Query: 61  EVKLRDACMLIDLILLELHEFDVILGRE 89
            + + D   L+DLI L L + DVILG +
Sbjct: 356 PLTVSDKQFLVDLICLPLSQLDVILGMD 383

[Close]
BLAST of Lsi09G010170 vs. TrEMBL
Match: A0A151UA69_CAJCA (Transposon Ty3-G Gag-Pol polyprotein OS=Cajanus cajan GN=KK1_020314 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 7.5e-08
Identity = 36/88 (40.91%), Postives = 49/88 (55.68%), Query Frame = 1 

Query: 1   TVLICDSSIYVLIDSGSTHSFISTRNAEMLSMKLEFLSGDLVVSTPMGDVLIADLVCKNG 60
           T  I ++   VL DSG+THSFIS    + L++ +  L  DLVV TP    +   LVC   
Sbjct: 296 TCFIAETPFVVLFDSGATHSFISVSCVQKLNLPVSLLDFDLVVETPTNGPVTTSLVCLKC 355

Query: 61  EVKLRDACMLIDLILLELHEFDVILGRE 89
            + + D   L+DLI L L + DVILG +
Sbjct: 356 PLTVSDKQFLVDLICLPLSQLDVILGMD 383

[Close]
BLAST of Lsi09G010170 vs. NCBI nr
Match: gi|659127634|ref|XP_008463805.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103501860 [Cucumis melo])

HSP 1 Score: 82.4 bits (202), Expect = 5.0e-13
Identity = 42/88 (47.73%), Postives = 60/88 (68.18%), Query Frame = 1 

Query: 1   TVLICDSSIYVLIDSGSTHSFISTRNAEMLSMKLEFLSGDLVVSTPMGDVLIADLVCKNG 60
           T+LICD    +L+DSG+THSF+S+     L+  LE LS +LV+ TP+GD+L+   V ++ 
Sbjct: 143 TILICDVPARILLDSGTTHSFVSSMFLTKLNRMLEPLSEELVICTPVGDILLVSEVLRDC 202

Query: 61  EVKLRDACMLIDLILLELHEFDVILGRE 89
           EV +   CML+DL+ LEL   DVILG +
Sbjct: 203 EVVVEGLCMLVDLLPLELQALDVILGMD 230

[Close]
BLAST of Lsi09G010170 vs. NCBI nr
Match: gi|659133542|ref|XP_008466780.1| (PREDICTED: uncharacterized protein LOC103504112 [Cucumis melo])

HSP 1 Score: 80.5 bits (197), Expect = 1.9e-12
Identity = 43/88 (48.86%), Postives = 59/88 (67.05%), Query Frame = 1 

Query: 1   TVLICDSSIYVLIDSGSTHSFISTRNAEMLSMKLEFLSGDLVVSTPMGDVLIADLVCKNG 60
           T+LIC+    VL+DSG+THSF+S+     L+  LE LS +LV+ TP+GDVL+   V ++ 
Sbjct: 280 TILICNVPARVLLDSGATHSFVSSMFLTKLNRMLEPLSEELVICTPVGDVLLVSEVLRDC 339

Query: 61  EVKLRDACMLIDLILLELHEFDVILGRE 89
           EV +   CML+DL  LEL   DVILG +
Sbjct: 340 EVVVEGLCMLVDLFPLELQALDVILGMD 367

[Close]
BLAST of Lsi09G010170 vs. NCBI nr
Match: gi|672193193|ref|XP_008775966.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696207 [Phoenix dactylifera])

HSP 1 Score: 72.4 bits (176), Expect = 5.1e-10
Identity = 39/92 (42.39%), Postives = 61/92 (66.30%), Query Frame = 1 

Query: 1   TVLICDSSIYVLIDSGSTHSFIST----RNAEMLSMKLEFLSGDLVVSTPMGDVLIADLV 60
           T+ +  ++ YVLID G++HSF+S     RN  M+SM LE    +L VSTP GDV++ + V
Sbjct: 277 TIKVSSTNAYVLIDPGASHSFVSVDFVRRNNTMISMPLEI---ELCVSTPSGDVILVNSV 336

Query: 61  CKNGEVKLRDACMLIDLILLELHEFDVILGRE 89
           CK+  + +    M +DL++LE+ +FD+ILG +
Sbjct: 337 CKDCILNIEGRKMKVDLLVLEMKDFDMILGMD 365

[Close]
BLAST of Lsi09G010170 vs. NCBI nr
Match: gi|747105973|ref|XP_011101266.1| (PREDICTED: uncharacterized protein LOC105179359 [Sesamum indicum])

HSP 1 Score: 72.0 bits (175), Expect = 6.7e-10
Identity = 39/87 (44.83%), Postives = 58/87 (66.67%), Query Frame = 1 

Query: 2   VLICDSSIYVLIDSGSTHSFISTRNAEMLSMKLEFLSGDLVVSTPMGDVLIADLVCKNGE 61
           +L+ D+  YVLIDSGSTHS+IS+  A  +  +   L  +L+V  PMG  ++ + V K   
Sbjct: 246 ILLSDNMAYVLIDSGSTHSYISSEFASKIPRENSPLGCNLMVYLPMGGGVVVNSVRKGSF 305

Query: 62  VKLRDACMLIDLILLELHEFDVILGRE 89
           V++RD  + +DLI+L+L EFDVILG +
Sbjct: 306 VRIRDVNLPVDLIVLDLKEFDVILGMD 332

[Close]
BLAST of Lsi09G010170 vs. NCBI nr
Match: gi|147792776|emb|CAN62233.1| (hypothetical protein VITISV_010121 [Vitis vinifera])

HSP 1 Score: 71.2 bits (173), Expect = 1.1e-09
Identity = 36/78 (46.15%), Postives = 54/78 (69.23%), Query Frame = 1 

Query: 11  VLIDSGSTHSFISTRNAEMLSMKLEFLSGDLVVSTPMGDVLIADLVCKNGEVKLRDACML 70
           VLID GSTHSF+S   A +L + +  +  DL+V+TP+GD ++A  + +N  V +    ML
Sbjct: 97  VLIDPGSTHSFVSVSFAGLLGLPVASMDFDLIVATPVGDFVVASRMLRNCIVMIGYREML 156

Query: 71  IDLILLELHEFDVILGRE 89
           +DL+LL+L +FDVILG +
Sbjct: 157 VDLVLLDLQDFDVILGMD 174

The following BLAST results are available for this feature:
BLAST of Lsi09G010170 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi09G010170 vs. TrEMBL
Match NameE-valueIdentityDescription
A5C9U3_VITVI8.0e-1046.15Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_010121 PE=4 SV=1[more]
A0A022QVU9_ERYGU3.4e-0839.77Uncharacterized protein (Fragment) OS=Erythranthe guttata GN=MIMGU_mgv1a024293mg... [more]
A0A151S8Y8_CAJCA7.5e-0840.91Retrotransposable element Tf2 OS=Cajanus cajan GN=KK1_026936 PE=4 SV=1[more]
A0A151TRJ7_CAJCA7.5e-0840.91Transposon Ty3-G Gag-Pol polyprotein OS=Cajanus cajan GN=KK1_008879 PE=4 SV=1[more]
A0A151UA69_CAJCA7.5e-0840.91Transposon Ty3-G Gag-Pol polyprotein OS=Cajanus cajan GN=KK1_020314 PE=4 SV=1[more]
BLAST of Lsi09G010170 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi09G010170 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659127634|ref|XP_008463805.1|5.0e-1347.73PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103501860 [Cucumis me... [more]
gi|659133542|ref|XP_008466780.1|1.9e-1248.86PREDICTED: uncharacterized protein LOC103504112 [Cucumis melo][more]
gi|672193193|ref|XP_008775966.1|5.1e-1042.39PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696207 [Phoenix da... [more]
gi|747105973|ref|XP_011101266.1|6.7e-1044.83PREDICTED: uncharacterized protein LOC105179359 [Sesamum indicum][more]
gi|147792776|emb|CAN62233.1|1.1e-0946.15hypothetical protein VITISV_010121 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
Vocabulary: Molecular Function
TermDefinition
GO:0004190aspartic-type endopeptidase activity
Vocabulary: INTERPRO
TermDefinition
IPR013242Retroviral aspartyl protease
IPR001969Aspartic_peptidase_AS
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
cellular_component GO:0005575 cellular_component
molecular_function GO:0004190 aspartic-type endopeptidase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi09G010170.1Lsi09G010170.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001969Aspartic peptidase, active sitePROSITEPS00141ASP_PROTEASEcoord: 11..22
scor
IPR013242Retroviral aspartyl proteasePFAMPF08284RVP_2coord: 9..88
score: 5.8

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi09G010170Watermelon (97103) v2lsiwmbB027
Lsi09G010170Wax gourdlsiwgoB030
Lsi09G010170Cucurbita maxima (Rimu)cmalsiB623
Lsi09G010170Cucurbita moschata (Rifu)cmolsiB257
Lsi09G010170Cucurbita moschata (Rifu)cmolsiB612
Lsi09G010170Cucurbita moschata (Rifu)cmolsiB618
Lsi09G010170Cucurbita pepo (Zucchini)cpelsiB313
Lsi09G010170Watermelon (Charleston Gray)lsiwcgB030