Lsi09G009980 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi09G009980
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr09 : 13613847 .. 13614855 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGCAAGTGCCGTTCACATGGAACCTTTCCCCTCTTCGGCCTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAAGATCTGCACCGACGGCCGCTCCGCCCGGGCTCGCGCCCAAGGTTTTGCAGCGACCGTCGCGCCCTCCTACTCATCGGGGCCTGGCTCTTGCCCCGACGGCCGGGTATAGGTCGCGCGCTTCAGCGCCATCCATTTTCGGGGCTAGTTGATTCGGCAGGTGAGTTGTTACACACTCCTTAGCGGATTTCGACTTCCATGACCACCGTCCTGCTGTCTTAATCGACCAACACCCTTTGTGGGATCTAGGTTAGCGCGCAGTTAGGCACCGTAACCCGGCTTCCGGTTCATCCCGCATCGCCAGTTCTGCTTACCAAAAATGGCCCACTTGGAGCTCTCGATTCCGTGGCGCGGCTCAACAAAGCAGCCGCGCCGTCCTACCTATTTAAAGTTTGAGAATAGGTCGAGGGCGTTGCGCCCCCGATGCCTCTAATCATTGGCTTTACCCGATAGAACTCGCCCGCGGGCTCCAGCTATCCTGAGGGAAACTTCGGAGGGAACCAGCTACTAGACGGTTCGATTAGTCTTTCGCCCCTATACCCAAGTCAGACGAACGATTTGCACGTCAGTATCGCTGCGGGCCTCCACCAGAGTTTCCTCTGGCTTCGCCCCGCTCAGGCATAGTTCACCATCTTTCGGGTCCCGACAGGCATGCTCACACTCGAACCCTTCTCAGAAGATCAAGGTCGGTCGGTGGTGCAACCCACTAGGGGATCCCACCAGTCAGCTTCCTTGCGCCTTACGGGTTTACTCGCCCGTTAACTCGCACACATGTCAGACTCCTTGGTCCGTGTTTCAAGACGGGTCGAATGGGGAGCCCACAGGCCGATGCCAGGAGCGCGCAGATGCCGAAGCCCGCCCGAAGGCGCGCGCTGCCAGCCACGATCGGGACGACGACGTCTCCACAGGCGTAACAAAGGCCTGGGCTTAG

mRNA sequence

ATGTGCAAGTGCCGTTCACATGGAACCTTTCCCCTCTTCGGCCTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAAGATCTGCACCGACGGCCGCTCCGCCCGGGCTCGCGCCCAAGGTTTTGCAGCGACCGTCGCGCCCTCCTACTCATCGGGGCCTGGCTCTTGCCCCGACGGCCGGGTATAGGTCGCGCGCTTCAGCGCCATCCATTTTCGGGGCTAGTTGATTCGGCAGTATCGCTGCGGGCCTCCACCAGAGTTTCCTCTGGCTTCGCCCCGCTCAGGCATAGTTCACCATCTTTCGGGTCCCGACAGGCATGCTCACACTCGAACCCTTCTCAGAAGATCAAGGTCGGTCGGTGGTGCAACCCACTAGGGGATCCCACCAGTCAGCTTCCTTGCGCCTTACGGGTTTACTCGCCCGTTAACTCGCACACATGTCAGACTCCTTGGTCCGTGTTTCAAGACGGGTCGAATGGGGAGCCCACAGGCCGATGCCAGGAGCGCGCAGATGCCGAAGCCCGCCCGAAGGCGCGCGCTGCCAGCCACGATCGGGACGACGACGTCTCCACAGGCGTAACAAAGGCCTGGGCTTAG

Coding sequence (CDS)

ATGTGCAAGTGCCGTTCACATGGAACCTTTCCCCTCTTCGGCCTTCAAAGTTCTCATTTGAATATTTGCTACTACCACCAAGATCTGCACCGACGGCCGCTCCGCCCGGGCTCGCGCCCAAGGTTTTGCAGCGACCGTCGCGCCCTCCTACTCATCGGGGCCTGGCTCTTGCCCCGACGGCCGGGTATAGGTCGCGCGCTTCAGCGCCATCCATTTTCGGGGCTAGTTGATTCGGCAGTATCGCTGCGGGCCTCCACCAGAGTTTCCTCTGGCTTCGCCCCGCTCAGGCATAGTTCACCATCTTTCGGGTCCCGACAGGCATGCTCACACTCGAACCCTTCTCAGAAGATCAAGGTCGGTCGGTGGTGCAACCCACTAGGGGATCCCACCAGTCAGCTTCCTTGCGCCTTACGGGTTTACTCGCCCGTTAACTCGCACACATGTCAGACTCCTTGGTCCGTGTTTCAAGACGGGTCGAATGGGGAGCCCACAGGCCGATGCCAGGAGCGCGCAGATGCCGAAGCCCGCCCGAAGGCGCGCGCTGCCAGCCACGATCGGGACGACGACGTCTCCACAGGCGTAACAAAGGCCTGGGCTTAG

Protein sequence

MCKCRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRPGSRPRFCSDRRALLLIGAWLLPRRPGIGRALQRHPFSGLVDSAVSLRASTRVSSGFAPLRHSSPSFGSRQACSHSNPSQKIKVGRWCNPLGDPTSQLPCALRVYSPVNSHTCQTPWSVFQDGSNGEPTGRCQERADAEARPKARAASHDRDDDVSTGVTKAWA
Homology
[Close]
BLAST of Lsi09G009980 vs. TrEMBL
Match: A0A0D2ZUF1_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 6.0e-62
Identity = 129/192 (67.19%), Postives = 144/192 (75.00%), Query Frame = 1 

Query: 1   MCKCRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRPGSRPRFCSDRRALLLIGAWLLPRR 60
           MCKCRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRP  R RFCSDRRALLLI AW+LPRR
Sbjct: 1   MCKCRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRPSLRLRFCSDRRALLLIEAWILPRR 60

Query: 61  PGIGRALQRHPFSGLVDSAVSLRASTRVSSGFAP-LRHSSPSFGSRQACS----HSNPSQ 120
           PGIGRALQRHPFSGLVDSA   R + +   G  P    +SP  G     S    H++   
Sbjct: 61  PGIGRALQRHPFSGLVDSA-DERFARQYRCGPPPEFPLASPRSGIVHHLSGPDRHAHTRT 120

Query: 121 KIKVGR--WCNPLGDPTSQLPCALRVYSPVNSHTCQTPWSVFQDGSNGEPTGRCQERADA 180
            ++  R   C P+ DP +QLP ALRVYSPV+SHTCQ+PWSVFQDGSNGEPTGRC + A+ 
Sbjct: 121 LLRRSRSVGCAPVRDPANQLPYALRVYSPVDSHTCQSPWSVFQDGSNGEPTGRCPKHANV 180

Query: 181 EARPKARAASHD 186
           E R +ARAA HD
Sbjct: 181 EERREARAADHD 191

[Close]
BLAST of Lsi09G009980 vs. TrEMBL
Match: M4FJ68_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 1.1e-55
Identity = 118/176 (67.05%), Postives = 129/176 (73.30%), Query Frame = 1 

Query: 1   MCKCRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRPGSRPRFCSDRRALLLIGAWLLPRR 60
           M KCRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRPG RPRFCSDRR LLLI AWLLPRR
Sbjct: 1   MWKCRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRPGLRPRFCSDRRTLLLIKAWLLPRR 60

Query: 61  PGIGRALQRHPFSGLVDSAVSLRASTRVSSGFAP-LRHSSPSFGSRQACS----HSNPSQ 120
           P I  ALQRHP  GLVDSA   R + +   G  P    +SP  G     S    H++   
Sbjct: 61  PDIVHALQRHPVLGLVDSA-DERFARQYRCGPPPEFPLASPRSGIVHHLSGPDRHAHTRT 120

Query: 121 KIKVGR--WCNPLGDPTSQLPCALRVYSPVNSHTCQTPWSVFQDGSNGEPTGRCQE 170
            ++  R   C P+ DP +QLPCALRVYSPV+SHTCQTPWSVF+DGSNGEPTGRC E
Sbjct: 121 LLRRSRSVGCAPVRDPANQLPCALRVYSPVDSHTCQTPWSVFKDGSNGEPTGRCPE 175

[Close]
BLAST of Lsi09G009980 vs. TrEMBL
Match: A0A0R0GH91_SOYBN (Uncharacterized protein (Fragment) OS=Glycine max GN=GLYMA_13G015000 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 3.8e-48
Identity = 102/147 (69.39%), Postives = 108/147 (73.47%), Query Frame = 1 

Query: 17  SSHLNICYYHQDLHRRPLRPGSRPRFCSDRRALLLIGAWLLPRRPGIGRALQRHPFSGLV 76
           +SHLNICYYHQDLHRRPLRPGSRP FCSDRRALLLIGAW LPRRP               
Sbjct: 239 TSHLNICYYHQDLHRRPLRPGSRPGFCSDRRALLLIGAWSLPRRP--------------- 298

Query: 77  DSAVSLRASTRVSSGFAPLRHSSPSFGSRQACSHSNPSQKIKVGRWCNPLGDPTSQLPCA 136
              VSLRASTRVSSGFAPLRHSSPSFGSRQ CSHSNPSQKI+VGR CNP GDPT+QLPCA
Sbjct: 299 ---VSLRASTRVSSGFAPLRHSSPSFGSRQVCSHSNPSQKIRVGRRCNPQGDPTNQLPCA 358

Query: 137 LRVYSPVNSHTCQTPWSVFQDGSNGEP 164
           LRV  P+     +     F+ G  G P
Sbjct: 359 LRVTRPLTRTHVRLLGPCFKTGRMGSP 367

[Close]
BLAST of Lsi09G009980 vs. TrEMBL
Match: M1DZ24_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400046276 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 1.5e-41
Identity = 87/101 (86.14%), Postives = 93/101 (92.08%), Query Frame = 1 

Query: 78  SAVSLRASTRVSSGFAPLRHSSPSFGSRQACSHSNPSQKIKVGRWCNPLGDPTSQLPCAL 137
           ++VSLRASTRVSSGFAPLRHSSPSFGSRQ CSHSNPSQKIKVGR C P GDPT+QLP AL
Sbjct: 17  TSVSLRASTRVSSGFAPLRHSSPSFGSRQVCSHSNPSQKIKVGRRCTPQGDPTNQLPYAL 76

Query: 138 RVYSPVNSHTCQTPWSVFQDGSNGEPTGRCQERADAEARPK 179
           RVYSPV+SHTCQTPWSVFQDGSNGEPTG+  ERADAEAR +
Sbjct: 77  RVYSPVDSHTCQTPWSVFQDGSNGEPTGQRPERADAEARQR 117

[Close]
BLAST of Lsi09G009980 vs. TrEMBL
Match: A0A0A0KWL1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G243140 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 5.9e-41
Identity = 80/82 (97.56%), Postives = 80/82 (97.56%), Query Frame = 1 

Query: 1  MCKCRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRPGSRPRFCSDRRALLLIGAWLLPRR 60
          MCKCRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRPGSRPRFCSDRRALLLIGAWLLPRR
Sbjct: 1  MCKCRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRPGSRPRFCSDRRALLLIGAWLLPRR 60

Query: 61 PGIGRALQRHPFSGLVDSAVSL 83
          PGIGRALQRHPFSGLVDSA  L
Sbjct: 61 PGIGRALQRHPFSGLVDSAGEL 82

[Close]
BLAST of Lsi09G009980 vs. NCBI nr
Match: gi|947068886|gb|KRH17777.1| (hypothetical protein GLYMA_13G015000, partial [Glycine max])

HSP 1 Score: 199.5 bits (506), Expect = 5.4e-48
Identity = 102/147 (69.39%), Postives = 108/147 (73.47%), Query Frame = 1 

Query: 17  SSHLNICYYHQDLHRRPLRPGSRPRFCSDRRALLLIGAWLLPRRPGIGRALQRHPFSGLV 76
           +SHLNICYYHQDLHRRPLRPGSRP FCSDRRALLLIGAW LPRRP               
Sbjct: 239 TSHLNICYYHQDLHRRPLRPGSRPGFCSDRRALLLIGAWSLPRRP--------------- 298

Query: 77  DSAVSLRASTRVSSGFAPLRHSSPSFGSRQACSHSNPSQKIKVGRWCNPLGDPTSQLPCA 136
              VSLRASTRVSSGFAPLRHSSPSFGSRQ CSHSNPSQKI+VGR CNP GDPT+QLPCA
Sbjct: 299 ---VSLRASTRVSSGFAPLRHSSPSFGSRQVCSHSNPSQKIRVGRRCNPQGDPTNQLPCA 358

Query: 137 LRVYSPVNSHTCQTPWSVFQDGSNGEP 164
           LRV  P+     +     F+ G  G P
Sbjct: 359 LRVTRPLTRTHVRLLGPCFKTGRMGSP 367

[Close]
BLAST of Lsi09G009980 vs. NCBI nr
Match: gi|700198832|gb|KGN53990.1| (hypothetical protein Csa_4G243140 [Cucumis sativus])

HSP 1 Score: 175.6 bits (444), Expect = 8.4e-41
Identity = 80/82 (97.56%), Postives = 80/82 (97.56%), Query Frame = 1 

Query: 1  MCKCRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRPGSRPRFCSDRRALLLIGAWLLPRR 60
          MCKCRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRPGSRPRFCSDRRALLLIGAWLLPRR
Sbjct: 1  MCKCRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRPGSRPRFCSDRRALLLIGAWLLPRR 60

Query: 61 PGIGRALQRHPFSGLVDSAVSL 83
          PGIGRALQRHPFSGLVDSA  L
Sbjct: 61 PGIGRALQRHPFSGLVDSAGEL 82

[Close]
BLAST of Lsi09G009980 vs. NCBI nr
Match: gi|902213626|gb|KNA17311.1| (hypothetical protein SOVF_081120 [Spinacia oleracea])

HSP 1 Score: 162.9 bits (411), Expect = 5.6e-37
Identity = 75/82 (91.46%), Postives = 76/82 (92.68%), Query Frame = 1 

Query: 1  MCKCRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRPGSRPRFCSDRRALLLIGAWLLPRR 60
          MCKCRSHGTFPLFGLQSSHLNICYYHQDLH+RPLRPGSR RFCSDR ALLLIGAW LPRR
Sbjct: 1  MCKCRSHGTFPLFGLQSSHLNICYYHQDLHQRPLRPGSRHRFCSDRCALLLIGAWHLPRR 60

Query: 61 PGIGRALQRHPFSGLVDSAVSL 83
          PGIG ALQRHPFSGLVDSA  L
Sbjct: 61 PGIGHALQRHPFSGLVDSAGEL 82

[Close]
BLAST of Lsi09G009980 vs. NCBI nr
Match: gi|253759791|ref|XP_002488947.1| (hypothetical protein SORBIDRAFT_1368s002010, partial [Sorghum bicolor])

HSP 1 Score: 158.3 bits (399), Expect = 1.4e-35
Identity = 73/82 (89.02%), Postives = 74/82 (90.24%), Query Frame = 1 

Query: 1  MCKCRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRPGSRPRFCSDRRALLLIGAWLLPRR 60
          MCKCRSHGTF LFGLQSSHLNICYYHQDLHRRPLRPGSRP FCS RRALLLIGAW  PR 
Sbjct: 1  MCKCRSHGTFLLFGLQSSHLNICYYHQDLHRRPLRPGSRPGFCSGRRALLLIGAWRSPRW 60

Query: 61 PGIGRALQRHPFSGLVDSAVSL 83
          PG+GRALQRHPFSGLVDSA  L
Sbjct: 61 PGVGRALQRHPFSGLVDSAGEL 82

[Close]
BLAST of Lsi09G009980 vs. NCBI nr
Match: gi|947068858|gb|KRH17749.1| (hypothetical protein GLYMA_13G012400 [Glycine max])

HSP 1 Score: 154.8 bits (390), Expect = 1.5e-34
Identity = 108/233 (46.35%), Postives = 125/233 (53.65%), Query Frame = 1 

Query: 4    CRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRPGSRPRFCSDRRALLLIGAWLLPRRPGI 63
            CRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRPGSRP FCSDRRALLLIGAW LPRRP  
Sbjct: 1049 CRSHGTFPLFGLQSSHLNICYYHQDLHRRPLRPGSRPGFCSDRRALLLIGAWSLPRRPDE 1108

Query: 64   GRALQ-----------RHPFSGLVD--SAVSLRASTR------------VSSGFAPLRHS 123
              A Q             P SG+V   S     A TR               G  P+   
Sbjct: 1109 RFARQYRCGPPPEFPLASPRSGIVHHLSGPDRYALTRTLHRRSGSVGGATHRGIPPISFL 1168

Query: 124  SPSFGSRQACSHSNP---SQKIKVGRWCNP-------LGDPTSQLPCALRVYSPVNSHTC 183
            +P +G  +  + ++        K GR  +P        GDPT+QLPCALRV  P+     
Sbjct: 1169 AP-YGFTRPLTRTHVRLLGPCFKTGRMGSPQADARSAQGDPTNQLPCALRVTRPL----- 1228

Query: 184  QTPWSVFQDGSNGEPTGRCQERADAEARPKARAASHDRDDDVSTGVT--KAWA 200
             T   V   G       RC+        P+ARAA H+RDDDVST ++  +AWA
Sbjct: 1229 -TRTHVRLLGPPTPGARRCR------GTPRARAAIHNRDDDVSTSISTARAWA 1268

The following BLAST results are available for this feature:
BLAST of Lsi09G009980 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi09G009980 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0D2ZUF1_BRAOL6.0e-6267.19Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1[more]
M4FJ68_BRARP1.1e-5567.05Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1[more]
A0A0R0GH91_SOYBN3.8e-4869.39Uncharacterized protein (Fragment) OS=Glycine max GN=GLYMA_13G015000 PE=4 SV=1[more]
M1DZ24_SOLTU1.5e-4186.14Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400046276 PE=4 SV=1[more]
A0A0A0KWL1_CUCSA5.9e-4197.56Uncharacterized protein OS=Cucumis sativus GN=Csa_4G243140 PE=4 SV=1[more]
BLAST of Lsi09G009980 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi09G009980 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|947068886|gb|KRH17777.1|5.4e-4869.39hypothetical protein GLYMA_13G015000, partial [Glycine max][more]
gi|700198832|gb|KGN53990.1|8.4e-4197.56hypothetical protein Csa_4G243140 [Cucumis sativus][more]
gi|902213626|gb|KNA17311.1|5.6e-3791.46hypothetical protein SOVF_081120 [Spinacia oleracea][more]
gi|253759791|ref|XP_002488947.1|1.4e-3589.02hypothetical protein SORBIDRAFT_1368s002010, partial [Sorghum bicolor][more]
gi|947068858|gb|KRH17749.1|1.5e-3446.35hypothetical protein GLYMA_13G012400 [Glycine max][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi09G009980.1Lsi09G009980.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR37395FAMILY NOT NAMEDcoord: 1..82
score: 8.4
NoneNo IPR availablePANTHERPTHR37395:SF2SUBFAMILY NOT NAMEDcoord: 1..82
score: 8.4

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi09G009980Cucurbita moschata (Rifu)cmolsiB257