Lsi09G007060 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi09G007060
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionTHO complex subunit 2
Locationchr09 : 8008906 .. 8011429 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCAAACCCCTATACTGTCTTTCTTCATTCACAATTCTTCATAAATCTCAAACCCTAATTTCTCTCGTATAGTAATACTAAACCCCCATGAGAACCCCATTGATTATCGTTCTCTGCTCGTATTCTCCTTTTTGAAGCTGTTACAGCTCTCAAAACCCAGCTATTTTTTTTGGGGTCTCTTAAAGGGATTGTATAGCTTCTCCCGGCAATGGCTCTCCCTCCGGTTGAGTGTATGTATGTCGTAGAAAGCAATATTCGAGAATGGAAGTCCGGAAACTCGAGCTTTAGGGTTCCTCAGCCTGTCCCCGTGGTTCGCTTCCTTTACGAGCTCTGCTGGACGATGGTTCGTACTCAAATTGACATGTATTTATCCATTTCTTTGATCAGCATATGTTTTCATTTTCATGTGCCTGGTATTTTGCACCATGTAGAAGTTGTGGTTTTTAGTAACTAATAAGTGTTTCTTCTTCTTTTTTTTTTTTTTGGGGGGGGGGGGGGGGGGGGGGGGGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGTGGGGGTGGGGATATTAGTGGTGCAATGATTTCATTATTGATATATATTTGTTTATGTGGTTGTATCGGATTCAGGTCCGAGGGGAATTGCCATTTCAGAAGTGTAAAGCAGCATTGGATTCAGTTGAGTTCTCGGACAAAATGTCTGCGGAGGAGTTAGGATCAACTTTTGCTGATGTCATTACCCAATTGGCTCAAGATGTTAGTATTTAATTTTACATTATATCTTCGTTAACAGCAAGCTTCATGTTCTTTTTTTGATAAGAACATCTACCTTCATTTTCCATTTTATGCTTAAATGGATTTTTGCCAACTTGAAAATAGCTTAGCTAGTTAAAACAAATATGCTTGGCCTTAGGTTCGAAAAGCTGCTCACATATTGTTGAACTCAAAGGTGGATACACAAATTCTTCTACTTGTTTGATGACAAACCAACTTCTTTTAAGACGAATGAAAGAATACAAAGGAGGCCAAGCCAAATGTGGGGTTATGCCCACAAAAAAGGGGAAAAAAATAAAGAAGCAAATAGAAAGAACCCATGTTTGTTTTTTTTATGAAATGTAAAGGATGATTACAAAACGAATGAAATTAAGCACCTAAAAGAGATGTTTTAATCTGCATAAGATCCCAAACGTTATTTTACAAATCCATTTACCACCACAATTGTTTTCCAGTTCCTTTGTAATGCAACACTTTGTTTAAGAAGTTGACTTGTCAAAGAACACAACTTCTCCCTTGAAGGAAGGTTCTTGAGTACTTACTCCTAATAAACTCAAAATCGGCCTTGAAGGACTCATAGTATTGATGGGAAAGCACCATCATCATAAAATATGGTTCAAATTTTCTGCCCACTAGTTTTGCTCCAGTTAATGTTTGTTTTGAAGTTCCCCATCTTAAACCTATAAGTTGATATACAATTGTAATATTTTGGTTTGGTTGAAAGTCTCTTATTTGCAAAGTTTTCTTTATGCTTCATTTGAATTGTATACTATTCAAGTTTCTGATGGAGAAAATATCTTCAAATGTGAGAAGTTCTATGCTTATTAATCTAAATTTACTTAATTTGCAGATCACATTAGCGGGAGAGTATCGTGCACGTCTTTTAAAATTGGTGAGTATATAACCTATAAGAGATTATGATTATTGTCTCATGATGTAGGGCAGTTTTGTTTTTTTTGTTTAGGCTAGAAACGGAACCAAAATCAATTGGAAGCCAAAAGGGATATACAAAAAATGGAGAAGAGATATCCCCAACCCCCAAGGAGGTTACAAAAAGGTCCCAGTGCTAAAAAATGTACGGAAGACTATAGTTACAAAAAGTATAAAGAGTGCACCAAGTAGAGGGAAAAAAGTCTGA

mRNA sequence

CCAAACCCCTATACTGTCTTTCTTCATTCACAATTCTTCATAAATCTCAAACCCTAATTTCTCTCGTATAGTAATACTAAACCCCCATGAGAACCCCATTGATTATCGTTCTCTGCTCGTATTCTCCTTTTTGAAGCTGTTACAGCTCTCAAAACCCAGCTATTTTTTTTGGGGTCTCTTAAAGGGATTGTATAGCTTCTCCCGGCAATGGCTCTCCCTCCGGTTGAGTGTATGTATGTCGTAGAAAGCAATATTCGAGAATGGAAGTCCGGAAACTCGAGCTTTAGGGTTCCTCAGCCTGTCCCCGTGGTTCGCTTCCTTTACGAGCTCTGCTGGACGATGGTCCGAGGGGAATTGCCATTTCAGAAGTGTAAAGCAGCATTGGATTCAGTTGAGTTCTCGGACAAAATGTCTGCGGAGGAGTTAGGATCAACTTTTGCTGATGTCATTACCCAATTGGCTCAAGATATCACATTAGCGGGAGAGTATCGTGCACGTCTTTTAAAATTGGCTAGAAACGGAACCAAAATCAATTGGAAGCCAAAAGGGATATACAAAAAATGGAGAAGAGATATCCCCAACCCCCAAGGAGGTTACAAAAAGGTCCCAGTGCTAAAAAATGTACGGAAGACTATAGTTACAAAAAGTATAAAGAGTGCACCAAGTAGAGGGAAAAAAGTCTGA

Coding sequence (CDS)

ATGGCTCTCCCTCCGGTTGAGTGTATGTATGTCGTAGAAAGCAATATTCGAGAATGGAAGTCCGGAAACTCGAGCTTTAGGGTTCCTCAGCCTGTCCCCGTGGTTCGCTTCCTTTACGAGCTCTGCTGGACGATGGTCCGAGGGGAATTGCCATTTCAGAAGTGTAAAGCAGCATTGGATTCAGTTGAGTTCTCGGACAAAATGTCTGCGGAGGAGTTAGGATCAACTTTTGCTGATGTCATTACCCAATTGGCTCAAGATATCACATTAGCGGGAGAGTATCGTGCACGTCTTTTAAAATTGGCTAGAAACGGAACCAAAATCAATTGGAAGCCAAAAGGGATATACAAAAAATGGAGAAGAGATATCCCCAACCCCCAAGGAGGTTACAAAAAGGTCCCAGTGCTAAAAAATGTACGGAAGACTATAGTTACAAAAAGTATAAAGAGTGCACCAAGTAGAGGGAAAAAAGTCTGA

Protein sequence

MALPPVECMYVVESNIREWKSGNSSFRVPQPVPVVRFLYELCWTMVRGELPFQKCKAALDSVEFSDKMSAEELGSTFADVITQLAQDITLAGEYRARLLKLARNGTKINWKPKGIYKKWRRDIPNPQGGYKKVPVLKNVRKTIVTKSIKSAPSRGKKV
Homology
[Close]
BLAST of Lsi09G007060 vs. Swiss-Prot
Match: THOC2_ARATH (THO complex subunit 2 OS=Arabidopsis thaliana GN=THO2 PE=1 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 8.2e-31
Identity = 61/103 (59.22%), Postives = 80/103 (77.67%), Query Frame = 1 

Query: 1   MALPPVECMYVVESNIREWKSGNSSFRVPQPVPVVRFLYELCWTMVRGELPFQKCKAALD 60
           M+LP +EC YV E  +RE K+GN   ++P  VP++RFLYEL W +VRGELP Q CKA L+
Sbjct: 1   MSLPLLECKYVTEEFVREGKNGNYGTKLPSSVPMLRFLYELSWILVRGELPIQSCKAVLE 60

Query: 61  SVEFSDKMSAEELGSTFADVITQLAQDITLAGEYRARLLKLAR 104
            VEF DK S EEL S FADV+TQ+AQD+T++G+ R+RL+KLA+
Sbjct: 61  GVEFLDKPSREELASCFADVVTQIAQDLTMSGDQRSRLIKLAK 103

[Close]
BLAST of Lsi09G007060 vs. TrEMBL
Match: A0A0A0KPA6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G550190 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 8.5e-51
Identity = 100/103 (97.09%), Postives = 103/103 (100.00%), Query Frame = 1 

Query: 1   MALPPVECMYVVESNIREWKSGNSSFRVPQPVPVVRFLYELCWTMVRGELPFQKCKAALD 60
           MALPPVECMYVVESNIREWKSGNSSFRVPQPVPVVRFLYELCWTMVRG+LPFQKCKAALD
Sbjct: 1   MALPPVECMYVVESNIREWKSGNSSFRVPQPVPVVRFLYELCWTMVRGDLPFQKCKAALD 60

Query: 61  SVEFSDKMSAEELGSTFADVITQLAQDITLAGEYRARLLKLAR 104
           SVEFS+KMSAEELGSTFADVITQLAQDITLAGEYRARLLKLA+
Sbjct: 61  SVEFSEKMSAEELGSTFADVITQLAQDITLAGEYRARLLKLAK 103

[Close]
BLAST of Lsi09G007060 vs. TrEMBL
Match: A0A067KT72_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04801 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 2.3e-40
Identity = 74/103 (71.84%), Postives = 94/103 (91.26%), Query Frame = 1 

Query: 1   MALPPVECMYVVESNIREWKSGNSSFRVPQPVPVVRFLYELCWTMVRGELPFQKCKAALD 60
           M+LPP++C+YV E  +REWKSGN +FRV  PVP++RFLYELCWTMVRGE PFQKCKAALD
Sbjct: 1   MSLPPIDCIYVTEECVREWKSGNQNFRVSSPVPMLRFLYELCWTMVRGEFPFQKCKAALD 60

Query: 61  SVEFSDKMSAEELGSTFADVITQLAQDITLAGEYRARLLKLAR 104
           SVEFSD++S++EL S+FAD++TQ+AQD+T+ GEYRARL+KLA+
Sbjct: 61  SVEFSDRVSSQELASSFADIVTQMAQDLTMPGEYRARLIKLAK 103

[Close]
BLAST of Lsi09G007060 vs. TrEMBL
Match: B9SNG7_RICCO (Tho2 protein, putative OS=Ricinus communis GN=RCOM_1148800 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.3e-38
Identity = 73/103 (70.87%), Postives = 93/103 (90.29%), Query Frame = 1 

Query: 1   MALPPVECMYVVESNIREWKSGNSSFRVPQPVPVVRFLYELCWTMVRGELPFQKCKAALD 60
           M+LPP++C+YV E  IREWKSG+SSFRVP PVP++RFLYELCWTMVRGELP+ KCKAAL+
Sbjct: 1   MSLPPIDCIYVREDYIREWKSGSSSFRVPDPVPMLRFLYELCWTMVRGELPYLKCKAALE 60

Query: 61  SVEFSDKMSAEELGSTFADVITQLAQDITLAGEYRARLLKLAR 104
           SVE+++ +SA  L STFAD++TQ+AQD+T+ GEYRARL+KLA+
Sbjct: 61  SVEYTESVSARVLASTFADIVTQMAQDLTMPGEYRARLIKLAK 103

[Close]
BLAST of Lsi09G007060 vs. TrEMBL
Match: A0A151T380_CAJCA (THO complex subunit 2 OS=Cajanus cajan GN=KK1_015986 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 3.1e-37
Identity = 70/103 (67.96%), Postives = 90/103 (87.38%), Query Frame = 1 

Query: 1   MALPPVECMYVVESNIREWKSGNSSFRVPQPVPVVRFLYELCWTMVRGELPFQKCKAALD 60
           M+LPP+EC+YV E  +REW+SGN + +V +PVP++RFLYELCWTMVRGELPFQKCK ALD
Sbjct: 1   MSLPPIECVYVTEDYVREWRSGNPALKVSEPVPMLRFLYELCWTMVRGELPFQKCKVALD 60

Query: 61  SVEFSDKMSAEELGSTFADVITQLAQDITLAGEYRARLLKLAR 104
           SV FSDK S E++ S FAD++TQ+AQD T++GE+R+RL+KLAR
Sbjct: 61  SVIFSDKASTEKIASNFADIVTQMAQDHTMSGEFRSRLVKLAR 103

[Close]
BLAST of Lsi09G007060 vs. TrEMBL
Match: A0A0R0K6Z2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_05G241400 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 7.0e-37
Identity = 71/103 (68.93%), Postives = 89/103 (86.41%), Query Frame = 1 

Query: 1   MALPPVECMYVVESNIREWKSGNSSFRVPQPVPVVRFLYELCWTMVRGELPFQKCKAALD 60
           M+LPP+EC YV E  IREW+SGN + +V QPVP++RFLYELCWTMVRGELPFQKCK ALD
Sbjct: 1   MSLPPIECAYVTEECIREWRSGNPALKVSQPVPMLRFLYELCWTMVRGELPFQKCKVALD 60

Query: 61  SVEFSDKMSAEELGSTFADVITQLAQDITLAGEYRARLLKLAR 104
           SV FSDK S E++ S F+D++TQ+AQD T++GE+R+RL+KLAR
Sbjct: 61  SVIFSDKASNEKIASNFSDIVTQMAQDHTMSGEFRSRLIKLAR 103

[Close]
BLAST of Lsi09G007060 vs. TAIR10
Match: AT1G24706.2 (AT1G24706.2 THO2)

HSP 1 Score: 134.8 bits (338), Expect = 4.6e-32
Identity = 61/103 (59.22%), Postives = 80/103 (77.67%), Query Frame = 1 

Query: 1   MALPPVECMYVVESNIREWKSGNSSFRVPQPVPVVRFLYELCWTMVRGELPFQKCKAALD 60
           M+LP +EC YV E  +RE K+GN   ++P  VP++RFLYEL W +VRGELP Q CKA L+
Sbjct: 1   MSLPLLECKYVTEEFVREGKNGNYGTKLPSSVPMLRFLYELSWILVRGELPIQSCKAVLE 60

Query: 61  SVEFSDKMSAEELGSTFADVITQLAQDITLAGEYRARLLKLAR 104
            VEF DK S EEL S FADV+TQ+AQD+T++G+ R+RL+KLA+
Sbjct: 61  GVEFLDKPSREELASCFADVVTQIAQDLTMSGDQRSRLIKLAK 103

[Close]
BLAST of Lsi09G007060 vs. NCBI nr
Match: gi|449450219|ref|XP_004142861.1| (PREDICTED: THO complex subunit 2 [Cucumis sativus])

HSP 1 Score: 208.0 bits (528), Expect = 1.2e-50
Identity = 100/103 (97.09%), Postives = 103/103 (100.00%), Query Frame = 1 

Query: 1   MALPPVECMYVVESNIREWKSGNSSFRVPQPVPVVRFLYELCWTMVRGELPFQKCKAALD 60
           MALPPVECMYVVESNIREWKSGNSSFRVPQPVPVVRFLYELCWTMVRG+LPFQKCKAALD
Sbjct: 1   MALPPVECMYVVESNIREWKSGNSSFRVPQPVPVVRFLYELCWTMVRGDLPFQKCKAALD 60

Query: 61  SVEFSDKMSAEELGSTFADVITQLAQDITLAGEYRARLLKLAR 104
           SVEFS+KMSAEELGSTFADVITQLAQDITLAGEYRARLLKLA+
Sbjct: 61  SVEFSEKMSAEELGSTFADVITQLAQDITLAGEYRARLLKLAK 103

[Close]
BLAST of Lsi09G007060 vs. NCBI nr
Match: gi|659072782|ref|XP_008467094.1| (PREDICTED: THO complex subunit 2 [Cucumis melo])

HSP 1 Score: 205.7 bits (522), Expect = 6.0e-50
Identity = 99/103 (96.12%), Postives = 102/103 (99.03%), Query Frame = 1 

Query: 1   MALPPVECMYVVESNIREWKSGNSSFRVPQPVPVVRFLYELCWTMVRGELPFQKCKAALD 60
           MALPPVECMYVVESNIREWKSGNSSFRVPQPVPVVRFLYELCWTMVRGELPFQKCKAALD
Sbjct: 1   MALPPVECMYVVESNIREWKSGNSSFRVPQPVPVVRFLYELCWTMVRGELPFQKCKAALD 60

Query: 61  SVEFSDKMSAEELGSTFADVITQLAQDITLAGEYRARLLKLAR 104
           SVEFS+K+SAEELGS FADVITQLAQDITLAGEYRARLLKLA+
Sbjct: 61  SVEFSEKVSAEELGSAFADVITQLAQDITLAGEYRARLLKLAK 103

[Close]
BLAST of Lsi09G007060 vs. NCBI nr
Match: gi|643730726|gb|KDP38158.1| (hypothetical protein JCGZ_04801 [Jatropha curcas])

HSP 1 Score: 173.3 bits (438), Expect = 3.3e-40
Identity = 74/103 (71.84%), Postives = 94/103 (91.26%), Query Frame = 1 

Query: 1   MALPPVECMYVVESNIREWKSGNSSFRVPQPVPVVRFLYELCWTMVRGELPFQKCKAALD 60
           M+LPP++C+YV E  +REWKSGN +FRV  PVP++RFLYELCWTMVRGE PFQKCKAALD
Sbjct: 1   MSLPPIDCIYVTEECVREWKSGNQNFRVSSPVPMLRFLYELCWTMVRGEFPFQKCKAALD 60

Query: 61  SVEFSDKMSAEELGSTFADVITQLAQDITLAGEYRARLLKLAR 104
           SVEFSD++S++EL S+FAD++TQ+AQD+T+ GEYRARL+KLA+
Sbjct: 61  SVEFSDRVSSQELASSFADIVTQMAQDLTMPGEYRARLIKLAK 103

[Close]
BLAST of Lsi09G007060 vs. NCBI nr
Match: gi|802596780|ref|XP_012072357.1| (PREDICTED: THO complex subunit 2 [Jatropha curcas])

HSP 1 Score: 173.3 bits (438), Expect = 3.3e-40
Identity = 74/103 (71.84%), Postives = 94/103 (91.26%), Query Frame = 1 

Query: 1   MALPPVECMYVVESNIREWKSGNSSFRVPQPVPVVRFLYELCWTMVRGELPFQKCKAALD 60
           M+LPP++C+YV E  +REWKSGN +FRV  PVP++RFLYELCWTMVRGE PFQKCKAALD
Sbjct: 1   MSLPPIDCIYVTEECVREWKSGNQNFRVSSPVPMLRFLYELCWTMVRGEFPFQKCKAALD 60

Query: 61  SVEFSDKMSAEELGSTFADVITQLAQDITLAGEYRARLLKLAR 104
           SVEFSD++S++EL S+FAD++TQ+AQD+T+ GEYRARL+KLA+
Sbjct: 61  SVEFSDRVSSQELASSFADIVTQMAQDLTMPGEYRARLIKLAK 103

[Close]
BLAST of Lsi09G007060 vs. NCBI nr
Match: gi|720048690|ref|XP_010271208.1| (PREDICTED: THO complex subunit 2 isoform X1 [Nelumbo nucifera])

HSP 1 Score: 169.1 bits (427), Expect = 6.3e-39
Identity = 72/103 (69.90%), Postives = 92/103 (89.32%), Query Frame = 1 

Query: 1   MALPPVECMYVVESNIREWKSGNSSFRVPQPVPVVRFLYELCWTMVRGELPFQKCKAALD 60
           M+LPP+EC YV E  +REWK+GN++F+VP PVP +RFLYELCW MVRGELPF KCKAALD
Sbjct: 1   MSLPPIECKYVTEECLREWKNGNTNFKVPNPVPALRFLYELCWAMVRGELPFPKCKAALD 60

Query: 61  SVEFSDKMSAEELGSTFADVITQLAQDITLAGEYRARLLKLAR 104
           SVEFS+K+S+EE+GS  AD++TQ+AQD+TL GE+RARL+K+A+
Sbjct: 61  SVEFSEKISSEEMGSNLADIVTQMAQDLTLPGEHRARLIKMAK 103

The following BLAST results are available for this feature:
BLAST of Lsi09G007060 vs. Swiss-Prot
Match NameE-valueIdentityDescription
THOC2_ARATH8.2e-3159.22THO complex subunit 2 OS=Arabidopsis thaliana GN=THO2 PE=1 SV=1[more]
BLAST of Lsi09G007060 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KPA6_CUCSA8.5e-5197.09Uncharacterized protein OS=Cucumis sativus GN=Csa_5G550190 PE=4 SV=1[more]
A0A067KT72_JATCU2.3e-4071.84Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04801 PE=4 SV=1[more]
B9SNG7_RICCO1.3e-3870.87Tho2 protein, putative OS=Ricinus communis GN=RCOM_1148800 PE=4 SV=1[more]
A0A151T380_CAJCA3.1e-3767.96THO complex subunit 2 OS=Cajanus cajan GN=KK1_015986 PE=4 SV=1[more]
A0A0R0K6Z2_SOYBN7.0e-3768.93Uncharacterized protein OS=Glycine max GN=GLYMA_05G241400 PE=4 SV=1[more]
BLAST of Lsi09G007060 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G24706.24.6e-3259.22 THO2[more]
BLAST of Lsi09G007060 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449450219|ref|XP_004142861.1|1.2e-5097.09PREDICTED: THO complex subunit 2 [Cucumis sativus][more]
gi|659072782|ref|XP_008467094.1|6.0e-5096.12PREDICTED: THO complex subunit 2 [Cucumis melo][more]
gi|643730726|gb|KDP38158.1|3.3e-4071.84hypothetical protein JCGZ_04801 [Jatropha curcas][more]
gi|802596780|ref|XP_012072357.1|3.3e-4071.84PREDICTED: THO complex subunit 2 [Jatropha curcas][more]
gi|720048690|ref|XP_010271208.1|6.3e-3969.90PREDICTED: THO complex subunit 2 isoform X1 [Nelumbo nucifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0000160 phosphorelay signal transduction system
biological_process GO:0023014 signal transduction by protein phosphorylation
cellular_component GO:0005575 cellular_component
cellular_component GO:0005622 intracellular
cellular_component GO:0016020 membrane
cellular_component GO:0009365 protein histidine kinase complex
molecular_function GO:0003674 molecular_function
molecular_function GO:0000155 phosphorelay sensor kinase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi09G007060.1Lsi09G007060.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR21597THO2 PROTEINcoord: 7..103
score: 7.6
NoneNo IPR availablePANTHERPTHR21597:SF0THO COMPLEX SUBUNIT 2coord: 7..103
score: 7.6

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi09G007060CmaCh04G021400Cucurbita maxima (Rimu)cmalsiB622
Lsi09G007060MELO3C005266Melon (DHL92) v3.5.1lsimeB008
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi09G007060Cucumber (Gy14) v1cgylsiB316
Lsi09G007060Cucurbita maxima (Rimu)cmalsiB268
Lsi09G007060Cucurbita moschata (Rifu)cmolsiB256
Lsi09G007060Cucurbita moschata (Rifu)cmolsiB610
Lsi09G007060Cucurbita pepo (Zucchini)cpelsiB130
Lsi09G007060Cucurbita pepo (Zucchini)cpelsiB311
Lsi09G007060Wild cucumber (PI 183967)cpilsiB329
Lsi09G007060Cucumber (Chinese Long) v2culsiB329
Lsi09G007060Melon (DHL92) v3.5.1lsimeB013
Lsi09G007060Watermelon (Charleston Gray)lsiwcgB008
Lsi09G007060Watermelon (97103) v1lsiwmB028
Lsi09G007060Cucumber (Gy14) v2cgyblsiB301
Lsi09G007060Melon (DHL92) v3.6.1lsimedB008
Lsi09G007060Silver-seed gourdcarlsiB754
Lsi09G007060Silver-seed gourdcarlsiB799
Lsi09G007060Cucumber (Chinese Long) v3cuclsiB352
Lsi09G007060Watermelon (97103) v2lsiwmbB007
Lsi09G007060Wax gourdlsiwgoB006