Lsi09G006030 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi09G006030
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description50S ribosomal protein L2, chloroplastic
Locationchr09 : 6577187 .. 6579132 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGACCCTCCAATAAGTCTATTGGAATTGGCTCTGTATCGATGGAATCTCATCATCCATACATAACGAATTGGTGTGGTATATTCATATCATAACATATGAACAGTAAGAACTAGCATTCTTATTGAGACTCGAACTCATAGGGAAGAAAATTTATGGATGGAATCAAATATGCAGTATTTACAGACAAAAGTATTCGGTTATTGGGGAAAAATCAATATACTTCTAATGTCGAATCAGGATCAACTAGGACAGAAATAAAGCATTGGGTCGAACTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATCGACTCCCGGGAAAGGGTAGAAGAATGGGACCTATTATGGGACATACAATGCATTACAGACGTATGATCATTACGCTTCAACCGGGTTATTCTATTCCACCTCTTAGAAAGAAAAGAACTTAAATCAAAATACTTAATAGCATGGCGATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGAGCCGTAGACAGTCAAGTAAAATCCAATCCACGAAATAATTTGATCTATGGACAGCATCGTTGTGGTAAAGGTCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGGTCATAAGCGTCTATACCGTAAAATCGATTTTCGACGGAATGAAAAAGACATATATGGTAGAATCGTAACCATAGAATACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAAAGATATATTTTACATCCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTTCCTATAAAAATGGGAAATGCCCTACCTTTGAGTGCGGTTTGAACTATTGATTTACGTAATTGGAAGTAACCAATTAGGTTTACGACGAAACCTAGAAATCGATCACTGATCCAATTTGAGTACCTCCACAGGATAGACCTCAACAGAAAACTGAAGAGTAACGGCAGCAAGTGATTGAGTTCAGTAGTTCCTCATATAAAATTATTGACTCTAGAGATATAGTAATATGGAGAAGACTAAATTGTTTCAAGCACCGACAGAACCAGAAGCGTCCCTTGTTTCAAAGAGAGCAGGACGGGTTATTCACATTTCATTTGATGGTCAGAGGCAAATTGAAAGCTAAGCAGTGGTAATTCTAAGGATTCCCGAGGGGAAAAATAGAGATGTCTCCTACGTTACCCGTAATATGTGGAAGTATCGACGTAATTTCATAGAGTCATTCGGTCTGAATGCTACATGAAGAACATAAGCCAGATGAAGGAACGGGAAGACCTAGGATGTAGAAGATCATAACATGAGTGATTCGGCAGATTTGGATTCCTATATATCCACTCATGTGGTACTTCATTGTACGATATATATAAGATCCATATGTATAGATATCATCATCTACATCCAGAAAGCCGTATGCTTTGGAAGAAGCTTGTACAGTTTGGGAAGGGGTTTTGATTGATCAAAAAGAAGAATCTACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACTTGGGAAGGGGGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAATTGCTCAGCAACAGTCGGACAAGTGGGGAATGCTGGGGTAAACCAGAAAAGTTTGGGTAGAGCCGGATCTAAATGTTGGCTAGGTAAGCGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTAGACCATCCCCATGGGGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCGCAACCCCTTGGGGTTATCCTGCACTTGGAAGAAGAAGTAGAAAAAGGAATAAATATAGTGATAATTTGATTCTTCGTCGCCGTAGTAAATAA

mRNA sequence

ATGGGACCCTCCAATAAGTCTATTGGAATTGGCTCTGTATCGATGGAATCTCATCATCCATACATAACGAATTGGTGTGGATCAACTAGGACAGAAATAAAGCATTGGGTCGAACTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATCGACTCCCGGGAAAGGGTAGAAGAATGGGACCTATTATGGGACATACAATGCATTACAGACGTCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGGTCATAAGCGTCTATACCGTAAAATCGATTTTCGACGGAATGAAAAAGACATATATGGTAGAATCGTAACCATAGAATACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAAAGATATATTTTACATCCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTTCCTATAAAAATGGGAAATGCCCTACCTTTGAGTGCGATATCATCATCTACATCCAGAAAGCCGTATGCTTTGGAAGAAGCTTGTACAGTTTGGGAAGGGGTTTTGATTGATCAAAAAGAAGAATCTACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACTTGGGAAGGGGGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAATTGCTCAGCAACAGTCGGACAAGTGGGGAATGCTGGGGTAAACCAGAAAAGTTTGGGTAGAGCCGGATCTAAATGTTGGCTAGGTAAGCGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTAGACCATCCCCATGGGGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCGCAACCCCTTGGGGTTATCCTGCACTTGGAAGAAGAAGTAGAAAAAGGAATAAATATAGTGATAATTTGATTCTTCGTCGCCGTAGTAAATAA

Coding sequence (CDS)

ATGGGACCCTCCAATAAGTCTATTGGAATTGGCTCTGTATCGATGGAATCTCATCATCCATACATAACGAATTGGTGTGGATCAACTAGGACAGAAATAAAGCATTGGGTCGAACTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATCGACTCCCGGGAAAGGGTAGAAGAATGGGACCTATTATGGGACATACAATGCATTACAGACGTCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGGTCATAAGCGTCTATACCGTAAAATCGATTTTCGACGGAATGAAAAAGACATATATGGTAGAATCGTAACCATAGAATACGACCCTAATCGAAATGCATACATTTGTCTCATACACTATGGGGATGGTGAGAAAAGATATATTTTACATCCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTTCCTATAAAAATGGGAAATGCCCTACCTTTGAGTGCGATATCATCATCTACATCCAGAAAGCCGTATGCTTTGGAAGAAGCTTGTACAGTTTGGGAAGGGGTTTTGATTGATCAAAAAGAAGAATCTACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAAATCACACTTGGGAAGGGGGGACAATTAGCTAGAGCAGCAGGTGCTGTAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAATTGCTCAGCAACAGTCGGACAAGTGGGGAATGCTGGGGTAAACCAGAAAAGTTTGGGTAGAGCCGGATCTAAATGTTGGCTAGGTAAGCGTCCTGTAGTAAGAGGAGTAGTTATGAACCCTGTAGACCATCCCCATGGGGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCGCAACCCCTTGGGGTTATCCTGCACTTGGAAGAAGAAGTAGAAAAAGGAATAAATATAGTGATAATTTGATTCTTCGTCGCCGTAGTAAATAA

Protein sequence

MGPSNKSIGIGSVSMESHHPYITNWCGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRRRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTVWEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK
Homology
[Close]
BLAST of Lsi09G006030 vs. Swiss-Prot
Match: RK2B_COFAR (50S ribosomal protein L2-B, chloroplastic OS=Coffea arabica GN=rpl2-B PE=3 SV=1)

HSP 1 Score: 445.7 bits (1145), Expect = 4.7e-124
Identity = 231/268 (86.19%), Postives = 232/268 (86.57%), Query Frame = 1 

Query: 73  RNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR 132
           RNARGIITAGHRGGGHKRLYRKIDFRR EKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR
Sbjct: 41  RNARGIITAGHRGGGHKRLYRKIDFRRTEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR 100

Query: 133 YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTVWEGVLIDQKE 192
           YILHPRGA+IGDTIVSGTEVPIKMGNALPLSA                            
Sbjct: 101 YILHPRGALIGDTIVSGTEVPIKMGNALPLSA---------------------------- 160

Query: 193 ESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNC 252
               TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNC
Sbjct: 161 ----TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNC 220

Query: 253 SATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPAT 312
           SATVGQVGN GVNQKSLGRAGSK WLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKP T
Sbjct: 221 SATVGQVGNVGVNQKSLGRAGSKRWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPTT 276

Query: 313 PWGYPALGRRSRKRNKYSDNLILRRRSK 341
           PWGYPALGRRSRKRNKYSDNLILRRRSK
Sbjct: 281 PWGYPALGRRSRKRNKYSDNLILRRRSK 276

[Close]
BLAST of Lsi09G006030 vs. Swiss-Prot
Match: RK2A_CHLSC (50S ribosomal protein L2-A, chloroplastic OS=Chloranthus spicatus GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 441.0 bits (1133), Expect = 1.1e-122
Identity = 227/266 (85.34%), Postives = 230/266 (86.47%), Query Frame = 1 

Query: 73  RNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR 132
           RNARGIITAGHRGGGHKRLYRKIDFRRNEKDI GRIVTIEYDPNRNAYICLIHYGDGEKR
Sbjct: 41  RNARGIITAGHRGGGHKRLYRKIDFRRNEKDISGRIVTIEYDPNRNAYICLIHYGDGEKR 100

Query: 133 YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTVWEGVLIDQKE 192
           YILHPRGAIIGDTIVSGTEVPI MGNALPLSA                            
Sbjct: 101 YILHPRGAIIGDTIVSGTEVPISMGNALPLSA---------------------------- 160

Query: 193 ESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNC 252
               TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATL+LPSGEVRLISKNC
Sbjct: 161 ----TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLRLPSGEVRLISKNC 220

Query: 253 SATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPAT 312
           SATVGQVGN GVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR+PIGRKKP T
Sbjct: 221 SATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRSPIGRKKPTT 274

Query: 313 PWGYPALGRRSRKRNKYSDNLILRRR 339
           PWGYPALGRRSRKRNKYSD+LILRRR
Sbjct: 281 PWGYPALGRRSRKRNKYSDSLILRRR 274

[Close]
BLAST of Lsi09G006030 vs. Swiss-Prot
Match: RK2_PLAOC (50S ribosomal protein L2, chloroplastic OS=Platanus occidentalis GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 427.6 bits (1098), Expect = 1.3e-118
Identity = 222/268 (82.84%), Postives = 227/268 (84.70%), Query Frame = 1 

Query: 73  RNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR 132
           RNARGIITAGHRGGGHKRLYRKIDFRRN+K+I GRIVTIEYDPNRNAYICLIHYGDGEKR
Sbjct: 41  RNARGIITAGHRGGGHKRLYRKIDFRRNKKNIEGRIVTIEYDPNRNAYICLIHYGDGEKR 100

Query: 133 YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTVWEGVLIDQKE 192
           YILHPRGAIIGD+IVSGTEV IKMGNAL L                              
Sbjct: 101 YILHPRGAIIGDSIVSGTEVSIKMGNALRLG----------------------------N 160

Query: 193 ESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNC 252
               TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNC
Sbjct: 161 ALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNC 220

Query: 253 SATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPAT 312
           SAT GQVGN GVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRK P T
Sbjct: 221 SATFGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKNPTT 280

Query: 313 PWGYPALGRRSRKRNKYSDNLILRRRSK 341
           PWGYPALGRRSRKRNKYSD+LILRRR+K
Sbjct: 281 PWGYPALGRRSRKRNKYSDSLILRRRTK 280

[Close]
BLAST of Lsi09G006030 vs. Swiss-Prot
Match: RK2A_LIRTU (50S ribosomal protein L2-A, chloroplastic OS=Liriodendron tulipifera GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 408.7 bits (1049), Expect = 6.3e-113
Identity = 216/275 (78.55%), Postives = 224/275 (81.45%), Query Frame = 1 

Query: 66  HTMHY--RRRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICL 125
           H  H+  + RNARGIITAGHRGGGHKRLYRKIDFRRNEKD  GRIVTIEYDPNRNAYICL
Sbjct: 31  HGQHHCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDTSGRIVTIEYDPNRNAYICL 90

Query: 126 IHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTVW 185
           IHYGDGEKRYILHPRGAIIGDTI          G  +P+S  ++                
Sbjct: 91  IHYGDGEKRYILHPRGAIIGDTI--------VSGTEVPISMGNALP-------------- 150

Query: 186 EGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSG 245
                       STDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATL+LPSG
Sbjct: 151 -----------LSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLRLPSG 210

Query: 246 EVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRA 305
           EVRLISKNCSATVGQVGN GVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRA
Sbjct: 211 EVRLISKNCSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRA 270

Query: 306 PIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRR 339
           PIGRKKP TPWGYPALGRRSRKRNKYSD+LILRRR
Sbjct: 271 PIGRKKPTTPWGYPALGRRSRKRNKYSDSLILRRR 272

[Close]
BLAST of Lsi09G006030 vs. Swiss-Prot
Match: RK2_GOSHI (50S ribosomal protein L2, chloroplastic OS=Gossypium hirsutum GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 405.6 bits (1041), Expect = 5.3e-112
Identity = 215/268 (80.22%), Postives = 221/268 (82.46%), Query Frame = 1 

Query: 73  RNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR 132
           RNARGIITA HRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR
Sbjct: 41  RNARGIITARHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR 100

Query: 133 YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTVWEGVLIDQKE 192
           YILHPRGAIIGDTIVSGTEVPIKMGNALPL+ +   T+                      
Sbjct: 101 YILHPRGAIIGDTIVSGTEVPIKMGNALPLTDMPLGTA---------------------- 160

Query: 193 ESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNC 252
              + ++ LG              QLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNC
Sbjct: 161 -IHNIEITLGRGG-----------QLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNC 220

Query: 253 SATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPAT 312
           SATVGQVGN GVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPAT
Sbjct: 221 SATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPAT 274

Query: 313 PWGYPALGRRSRKRNKYSDNLILRRRSK 341
           PWGYPALGRRSRKRNKYSDNLILRRRSK
Sbjct: 281 PWGYPALGRRSRKRNKYSDNLILRRRSK 274

[Close]
BLAST of Lsi09G006030 vs. TrEMBL
Match: A0A0N9YKK9_9ROSA (50S ribosomal protein L2, chloroplastic OS=Ficus racemosa GN=rpl2 PE=3 SV=1)

HSP 1 Score: 522.7 bits (1345), Expect = 3.3e-145
Identity = 263/269 (97.77%), Postives = 265/269 (98.51%), Query Frame = 1 

Query: 73  RNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR 132
           RNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYG+IVTIEYDPNRNAYICLIHYG GEKR
Sbjct: 47  RNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGKIVTIEYDPNRNAYICLIHYGGGEKR 106

Query: 133 YILHPRGAIIGDTIVSGTEVPIKMGNALPLSA-ISSSTSRKPYALEEACTVWEGVLIDQK 192
           YILHPRGA+IGDTIVSGTEVPIKMGNALPLSA ISSSTSRKPYALEEACTVWEGVLIDQK
Sbjct: 107 YILHPRGALIGDTIVSGTEVPIKMGNALPLSAVISSSTSRKPYALEEACTVWEGVLIDQK 166

Query: 193 EESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKN 252
           EESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLI KN
Sbjct: 167 EESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLIPKN 226

Query: 253 CSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPA 312
           CSATVGQVGN GVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPA
Sbjct: 227 CSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPA 286

Query: 313 TPWGYPALGRRSRKRNKYSDNLILRRRSK 341
           TPWGYPALGRRSRKRNKYSDNLILRRRSK
Sbjct: 287 TPWGYPALGRRSRKRNKYSDNLILRRRSK 315

[Close]
BLAST of Lsi09G006030 vs. TrEMBL
Match: T1WMD4_BERBE (50S ribosomal protein L2, chloroplastic OS=Berberis bealei GN=rpl2 PE=3 SV=1)

HSP 1 Score: 498.8 bits (1283), Expect = 5.2e-138
Identity = 256/278 (92.09%), Postives = 260/278 (93.53%), Query Frame = 1 

Query: 63  IMGHTMHYRRRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYIC 122
           I G     + RNARGIITA HRGGGHKRLYRKIDFRRNEKDI GRIVTIEYDPNRNA IC
Sbjct: 34  IYGQRRCGKGRNARGIITARHRGGGHKRLYRKIDFRRNEKDISGRIVTIEYDPNRNANIC 93

Query: 123 LIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTV 182
           LIHY DGEKRYILHPRGAIIGDTIVSGTEVPI MGNALPLS ISS TS KPYALEEACTV
Sbjct: 94  LIHYRDGEKRYILHPRGAIIGDTIVSGTEVPISMGNALPLS-ISSYTSGKPYALEEACTV 153

Query: 183 WEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS 242
           WEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS
Sbjct: 154 WEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS 213

Query: 243 GEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR 302
           GEVRLISKNCSATVGQVGN GVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR
Sbjct: 214 GEVRLISKNCSATVGQVGNLGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR 273

Query: 303 APIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK 341
           APIGRKKP TPWGYPALGRR+RK+ KYSD+LILRRRSK
Sbjct: 274 APIGRKKPTTPWGYPALGRRNRKKKKYSDSLILRRRSK 310

[Close]
BLAST of Lsi09G006030 vs. TrEMBL
Match: A0A0D3RWJ5_9LAMI (Ribosomal protein L2 OS=Ruellia breedlovei GN=rpl2 PE=3 SV=1)

HSP 1 Score: 485.3 bits (1248), Expect = 5.9e-134
Identity = 245/268 (91.42%), Postives = 249/268 (92.91%), Query Frame = 1 

Query: 73  RNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR 132
           RNARGIITA HRGGGHKRLYRKIDFRRNE+DIYGRIVTIEYDPNRNA ICLIHYGDGEKR
Sbjct: 41  RNARGIITARHRGGGHKRLYRKIDFRRNEQDIYGRIVTIEYDPNRNACICLIHYGDGEKR 100

Query: 133 YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTVWEGVLIDQKE 192
           YILHPRGA+IGDTIVSGTEVPIKMGNALPLS            LEEACTVWEGVLIDQKE
Sbjct: 101 YILHPRGALIGDTIVSGTEVPIKMGNALPLSRNHHLHPESRMLLEEACTVWEGVLIDQKE 160

Query: 193 ESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNC 252
           ESTSTDMPLGTAIHNIEITLGKGGQL RAAGAVAKLIAKEG+SATLKLPSGEVRLISKNC
Sbjct: 161 ESTSTDMPLGTAIHNIEITLGKGGQLVRAAGAVAKLIAKEGESATLKLPSGEVRLISKNC 220

Query: 253 SATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPAT 312
           SATVGQVGN G NQKSLGRAGSK WLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKP T
Sbjct: 221 SATVGQVGNVGANQKSLGRAGSKRWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPTT 280

Query: 313 PWGYPALGRRSRKRNKYSDNLILRRRSK 341
           PWGYPALGRRSRKRNKYSDNLI+RRRSK
Sbjct: 281 PWGYPALGRRSRKRNKYSDNLIVRRRSK 308

[Close]
BLAST of Lsi09G006030 vs. TrEMBL
Match: A0A0E3XCS0_9ROSI (50S ribosomal protein L2, chloroplastic OS=Quercus aquifolioides GN=rpl2 PE=3 SV=1)

HSP 1 Score: 477.2 bits (1227), Expect = 1.6e-131
Identity = 245/268 (91.42%), Postives = 245/268 (91.42%), Query Frame = 1 

Query: 73  RNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR 132
           RNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR
Sbjct: 41  RNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR 100

Query: 133 YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTVWEGVLIDQKE 192
           YILHPRGAIIGDTIVSGTEVPIKMGNALPLS                      VLIDQKE
Sbjct: 101 YILHPRGAIIGDTIVSGTEVPIKMGNALPLSE---------------------VLIDQKE 160

Query: 193 ESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNC 252
           ESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNC
Sbjct: 161 ESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNC 220

Query: 253 SATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPAT 312
           SATVGQVGN GVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPAT
Sbjct: 221 SATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPAT 280

Query: 313 PWGYPALGRRSRKRNKYSDNLILRRRSK 341
           PWGYPALGRRSRKRNKYSDNLILRRRSK
Sbjct: 281 PWGYPALGRRSRKRNKYSDNLILRRRSK 287

[Close]
BLAST of Lsi09G006030 vs. TrEMBL
Match: A0A140CPU8_9ROSI (50S ribosomal protein L2, chloroplastic OS=Quercus baronii GN=rpl2 PE=3 SV=1)

HSP 1 Score: 477.2 bits (1227), Expect = 1.6e-131
Identity = 245/268 (91.42%), Postives = 245/268 (91.42%), Query Frame = 1 

Query: 73  RNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR 132
           RNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR
Sbjct: 41  RNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR 100

Query: 133 YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTVWEGVLIDQKE 192
           YILHPRGAIIGDTIVSGTEVPIKMGNALPLS                      VLIDQKE
Sbjct: 101 YILHPRGAIIGDTIVSGTEVPIKMGNALPLSE---------------------VLIDQKE 160

Query: 193 ESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNC 252
           ESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNC
Sbjct: 161 ESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNC 220

Query: 253 SATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPAT 312
           SATVGQVGN GVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPAT
Sbjct: 221 SATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPAT 280

Query: 313 PWGYPALGRRSRKRNKYSDNLILRRRSK 341
           PWGYPALGRRSRKRNKYSDNLILRRRSK
Sbjct: 281 PWGYPALGRRSRKRNKYSDNLILRRRSK 287

[Close]
BLAST of Lsi09G006030 vs. TAIR10
Match: ATCG00830.1 (ATCG00830.1 ribosomal protein L2)

HSP 1 Score: 394.4 bits (1012), Expect = 6.9e-110
Identity = 209/268 (77.99%), Postives = 217/268 (80.97%), Query Frame = 1 

Query: 73  RNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR 132
           RNARGIITA HRGGGHKRLYRKIDFRRN KDIYGRIVTIEYDPNRNAYICLIHYGDGEKR
Sbjct: 41  RNARGIITARHRGGGHKRLYRKIDFRRNAKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR 100

Query: 133 YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTVWEGVLIDQKE 192
           YILHPRGAIIGDTIVSGTEVPIKMGNALPL+ +   T+                      
Sbjct: 101 YILHPRGAIIGDTIVSGTEVPIKMGNALPLTDMPLGTA---------------------- 160

Query: 193 ESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNC 252
              + ++ LG              QLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNC
Sbjct: 161 -IHNIEITLGRGG-----------QLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNC 220

Query: 253 SATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPAT 312
           SATVGQVGN GVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKP T
Sbjct: 221 SATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPVT 274

Query: 313 PWGYPALGRRSRKRNKYSDNLILRRRSK 341
           PWGYPALGRR+RKR KYS+ LILRRRSK
Sbjct: 281 PWGYPALGRRTRKRKKYSETLILRRRSK 274

[Close]
BLAST of Lsi09G006030 vs. TAIR10
Match: ATCG01310.1 (ATCG01310.1 ribosomal protein L2)

HSP 1 Score: 394.4 bits (1012), Expect = 6.9e-110
Identity = 209/268 (77.99%), Postives = 217/268 (80.97%), Query Frame = 1 

Query: 73  RNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR 132
           RNARGIITA HRGGGHKRLYRKIDFRRN KDIYGRIVTIEYDPNRNAYICLIHYGDGEKR
Sbjct: 41  RNARGIITARHRGGGHKRLYRKIDFRRNAKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR 100

Query: 133 YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTVWEGVLIDQKE 192
           YILHPRGAIIGDTIVSGTEVPIKMGNALPL+ +   T+                      
Sbjct: 101 YILHPRGAIIGDTIVSGTEVPIKMGNALPLTDMPLGTA---------------------- 160

Query: 193 ESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNC 252
              + ++ LG              QLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNC
Sbjct: 161 -IHNIEITLGRGG-----------QLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNC 220

Query: 253 SATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPAT 312
           SATVGQVGN GVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKP T
Sbjct: 221 SATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPVT 274

Query: 313 PWGYPALGRRSRKRNKYSDNLILRRRSK 341
           PWGYPALGRR+RKR KYS+ LILRRRSK
Sbjct: 281 PWGYPALGRRTRKRKKYSETLILRRRSK 274

[Close]
BLAST of Lsi09G006030 vs. TAIR10
Match: AT2G44065.1 (AT2G44065.1 Ribosomal protein L2 family)

HSP 1 Score: 115.2 bits (287), Expect = 8.1e-26
Identity = 61/126 (48.41%), Postives = 77/126 (61.11%), Query Frame = 1 

Query: 199 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATL-KLPSGEVRLISKNCSATVG 258
           M +GT IHNIE+  G+G ++ RAAG  AK++ +  K   L KLPSG+ + I+  C AT+G
Sbjct: 68  MRIGTIIHNIEMNPGQGAKMVRAAGTNAKILKEPAKGKCLIKLPSGDTKWINAKCRATIG 127

Query: 259 QVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPAT---PW 318
            V N     K L +AG   WLG RP VRGV MNP DHPHGGGEG++     +  T   PW
Sbjct: 128 TVSNPSHGTKKLYKAGQSRWLGIRPKVRGVAMNPCDHPHGGGEGKSKSSGSRGRTSVSPW 187

Query: 319 GYPALG 321
           G P  G
Sbjct: 188 GKPCKG 193

[Close]
BLAST of Lsi09G006030 vs. TAIR10
Match: ATCG00840.1 (ATCG00840.1 ribosomal protein L23.1)

HSP 1 Score: 95.9 bits (237), Expect = 5.1e-20
Identity = 43/46 (93.48%), Postives = 45/46 (97.83%), Query Frame = 1 

Query: 27 GSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRR 73
          GSTRTEIKHWVELFFGVKVIAMNSHRLPGK +RMGPI+GHTMHYRR
Sbjct: 29 GSTRTEIKHWVELFFGVKVIAMNSHRLPGKVKRMGPILGHTMHYRR 74

[Close]
BLAST of Lsi09G006030 vs. TAIR10
Match: ATCG01300.1 (ATCG01300.1 ribosomal protein L23)

HSP 1 Score: 95.9 bits (237), Expect = 5.1e-20
Identity = 43/46 (93.48%), Postives = 45/46 (97.83%), Query Frame = 1 

Query: 27 GSTRTEIKHWVELFFGVKVIAMNSHRLPGKGRRMGPIMGHTMHYRR 73
          GSTRTEIKHWVELFFGVKVIAMNSHRLPGK +RMGPI+GHTMHYRR
Sbjct: 29 GSTRTEIKHWVELFFGVKVIAMNSHRLPGKVKRMGPILGHTMHYRR 74

[Close]
BLAST of Lsi09G006030 vs. NCBI nr
Match: gi|944542124|ref|YP_009176044.1| (ribosomal protein L2 (chloroplast) [Ficus racemosa])

HSP 1 Score: 522.7 bits (1345), Expect = 4.8e-145
Identity = 263/269 (97.77%), Postives = 265/269 (98.51%), Query Frame = 1 

Query: 73  RNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR 132
           RNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYG+IVTIEYDPNRNAYICLIHYG GEKR
Sbjct: 47  RNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGKIVTIEYDPNRNAYICLIHYGGGEKR 106

Query: 133 YILHPRGAIIGDTIVSGTEVPIKMGNALPLSA-ISSSTSRKPYALEEACTVWEGVLIDQK 192
           YILHPRGA+IGDTIVSGTEVPIKMGNALPLSA ISSSTSRKPYALEEACTVWEGVLIDQK
Sbjct: 107 YILHPRGALIGDTIVSGTEVPIKMGNALPLSAVISSSTSRKPYALEEACTVWEGVLIDQK 166

Query: 193 EESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKN 252
           EESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLI KN
Sbjct: 167 EESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLIPKN 226

Query: 253 CSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPA 312
           CSATVGQVGN GVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPA
Sbjct: 227 CSATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPA 286

Query: 313 TPWGYPALGRRSRKRNKYSDNLILRRRSK 341
           TPWGYPALGRRSRKRNKYSDNLILRRRSK
Sbjct: 287 TPWGYPALGRRSRKRNKYSDNLILRRRSK 315

[Close]
BLAST of Lsi09G006030 vs. NCBI nr
Match: gi|552546157|ref|YP_008592707.1| (ribosomal protein L2 (chloroplast) [Berberis bealei])

HSP 1 Score: 498.8 bits (1283), Expect = 7.4e-138
Identity = 256/278 (92.09%), Postives = 260/278 (93.53%), Query Frame = 1 

Query: 63  IMGHTMHYRRRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYIC 122
           I G     + RNARGIITA HRGGGHKRLYRKIDFRRNEKDI GRIVTIEYDPNRNA IC
Sbjct: 34  IYGQRRCGKGRNARGIITARHRGGGHKRLYRKIDFRRNEKDISGRIVTIEYDPNRNANIC 93

Query: 123 LIHYGDGEKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTV 182
           LIHY DGEKRYILHPRGAIIGDTIVSGTEVPI MGNALPLS ISS TS KPYALEEACTV
Sbjct: 94  LIHYRDGEKRYILHPRGAIIGDTIVSGTEVPISMGNALPLS-ISSYTSGKPYALEEACTV 153

Query: 183 WEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS 242
           WEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS
Sbjct: 154 WEGVLIDQKEESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPS 213

Query: 243 GEVRLISKNCSATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR 302
           GEVRLISKNCSATVGQVGN GVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR
Sbjct: 214 GEVRLISKNCSATVGQVGNLGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGR 273

Query: 303 APIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK 341
           APIGRKKP TPWGYPALGRR+RK+ KYSD+LILRRRSK
Sbjct: 274 APIGRKKPTTPWGYPALGRRNRKKKKYSDSLILRRRSK 310

[Close]
BLAST of Lsi09G006030 vs. NCBI nr
Match: gi|766544210|gb|AJS14460.1| (ribosomal protein L2 [Ruellia breedlovei])

HSP 1 Score: 485.3 bits (1248), Expect = 8.5e-134
Identity = 245/268 (91.42%), Postives = 249/268 (92.91%), Query Frame = 1 

Query: 73  RNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR 132
           RNARGIITA HRGGGHKRLYRKIDFRRNE+DIYGRIVTIEYDPNRNA ICLIHYGDGEKR
Sbjct: 41  RNARGIITARHRGGGHKRLYRKIDFRRNEQDIYGRIVTIEYDPNRNACICLIHYGDGEKR 100

Query: 133 YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTVWEGVLIDQKE 192
           YILHPRGA+IGDTIVSGTEVPIKMGNALPLS            LEEACTVWEGVLIDQKE
Sbjct: 101 YILHPRGALIGDTIVSGTEVPIKMGNALPLSRNHHLHPESRMLLEEACTVWEGVLIDQKE 160

Query: 193 ESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNC 252
           ESTSTDMPLGTAIHNIEITLGKGGQL RAAGAVAKLIAKEG+SATLKLPSGEVRLISKNC
Sbjct: 161 ESTSTDMPLGTAIHNIEITLGKGGQLVRAAGAVAKLIAKEGESATLKLPSGEVRLISKNC 220

Query: 253 SATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPAT 312
           SATVGQVGN G NQKSLGRAGSK WLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKP T
Sbjct: 221 SATVGQVGNVGANQKSLGRAGSKRWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPTT 280

Query: 313 PWGYPALGRRSRKRNKYSDNLILRRRSK 341
           PWGYPALGRRSRKRNKYSDNLI+RRRSK
Sbjct: 281 PWGYPALGRRSRKRNKYSDNLIVRRRSK 308

[Close]
BLAST of Lsi09G006030 vs. NCBI nr
Match: gi|443267374|ref|YP_007375110.1| (ribosomal protein L2 [Quercus rubra])

HSP 1 Score: 477.2 bits (1227), Expect = 2.3e-131
Identity = 245/268 (91.42%), Postives = 245/268 (91.42%), Query Frame = 1 

Query: 73  RNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR 132
           RNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR
Sbjct: 41  RNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR 100

Query: 133 YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTVWEGVLIDQKE 192
           YILHPRGAIIGDTIVSGTEVPIKMGNALPLS                      VLIDQKE
Sbjct: 101 YILHPRGAIIGDTIVSGTEVPIKMGNALPLSE---------------------VLIDQKE 160

Query: 193 ESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNC 252
           ESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNC
Sbjct: 161 ESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNC 220

Query: 253 SATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPAT 312
           SATVGQVGN GVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPAT
Sbjct: 221 SATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPAT 280

Query: 313 PWGYPALGRRSRKRNKYSDNLILRRRSK 341
           PWGYPALGRRSRKRNKYSDNLILRRRSK
Sbjct: 281 PWGYPALGRRSRKRNKYSDNLILRRRSK 287

[Close]
BLAST of Lsi09G006030 vs. NCBI nr
Match: gi|948299668|ref|YP_009179097.1| (ribosomal protein L2 (chloroplast) [Ostrya rehderiana])

HSP 1 Score: 476.1 bits (1224), Expect = 5.1e-131
Identity = 244/268 (91.04%), Postives = 245/268 (91.42%), Query Frame = 1 

Query: 73  RNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR 132
           RN+RGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR
Sbjct: 41  RNSRGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDGEKR 100

Query: 133 YILHPRGAIIGDTIVSGTEVPIKMGNALPLSAISSSTSRKPYALEEACTVWEGVLIDQKE 192
           YILHPRGAIIGDTIVSGTEVPIKMGNALPLS                      VLIDQKE
Sbjct: 101 YILHPRGAIIGDTIVSGTEVPIKMGNALPLSE---------------------VLIDQKE 160

Query: 193 ESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNC 252
           ESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNC
Sbjct: 161 ESTSTDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNC 220

Query: 253 SATVGQVGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPAT 312
           SATVGQVGN GVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPAT
Sbjct: 221 SATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPAT 280

Query: 313 PWGYPALGRRSRKRNKYSDNLILRRRSK 341
           PWGYPALGRRSRKRNKYSDNLILRRRSK
Sbjct: 281 PWGYPALGRRSRKRNKYSDNLILRRRSK 287

The following BLAST results are available for this feature:
BLAST of Lsi09G006030 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RK2B_COFAR4.7e-12486.1950S ribosomal protein L2-B, chloroplastic OS=Coffea arabica GN=rpl2-B PE=3 SV=1[more]
RK2A_CHLSC1.1e-12285.3450S ribosomal protein L2-A, chloroplastic OS=Chloranthus spicatus GN=rpl2-A PE=3... [more]
RK2_PLAOC1.3e-11882.8450S ribosomal protein L2, chloroplastic OS=Platanus occidentalis GN=rpl2-A PE=3 ... [more]
RK2A_LIRTU6.3e-11378.5550S ribosomal protein L2-A, chloroplastic OS=Liriodendron tulipifera GN=rpl2-A P... [more]
RK2_GOSHI5.3e-11280.2250S ribosomal protein L2, chloroplastic OS=Gossypium hirsutum GN=rpl2-A PE=3 SV=... [more]
BLAST of Lsi09G006030 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0N9YKK9_9ROSA3.3e-14597.7750S ribosomal protein L2, chloroplastic OS=Ficus racemosa GN=rpl2 PE=3 SV=1[more]
T1WMD4_BERBE5.2e-13892.0950S ribosomal protein L2, chloroplastic OS=Berberis bealei GN=rpl2 PE=3 SV=1[more]
A0A0D3RWJ5_9LAMI5.9e-13491.42Ribosomal protein L2 OS=Ruellia breedlovei GN=rpl2 PE=3 SV=1[more]
A0A0E3XCS0_9ROSI1.6e-13191.4250S ribosomal protein L2, chloroplastic OS=Quercus aquifolioides GN=rpl2 PE=3 SV... [more]
A0A140CPU8_9ROSI1.6e-13191.4250S ribosomal protein L2, chloroplastic OS=Quercus baronii GN=rpl2 PE=3 SV=1[more]
BLAST of Lsi09G006030 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00830.16.9e-11077.99ATCG00830.1 ribosomal protein L2[more]
ATCG01310.16.9e-11077.99ATCG01310.1 ribosomal protein L2[more]
AT2G44065.18.1e-2648.41 Ribosomal protein L2 family[more]
ATCG00840.15.1e-2093.48ATCG00840.1 ribosomal protein L23.1[more]
ATCG01300.15.1e-2093.48ATCG01300.1 ribosomal protein L23[more]
BLAST of Lsi09G006030 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|944542124|ref|YP_009176044.1|4.8e-14597.77ribosomal protein L2 (chloroplast) [Ficus racemosa][more]
gi|552546157|ref|YP_008592707.1|7.4e-13892.09ribosomal protein L2 (chloroplast) [Berberis bealei][more]
gi|766544210|gb|AJS14460.1|8.5e-13491.42ribosomal protein L2 [Ruellia breedlovei][more]
gi|443267374|ref|YP_007375110.1|2.3e-13191.42ribosomal protein L2 [Quercus rubra][more]
gi|948299668|ref|YP_009179097.1|5.1e-13191.04ribosomal protein L2 (chloroplast) [Ostrya rehderiana][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0016740transferase activity
GO:0003723RNA binding
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0015934large ribosomal subunit
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR022671Ribosomal_L2_CS
IPR022669Ribosomal_L2_C
IPR022666Rbsml_prot_L2_RNA-bd_dom
IPR014726Ribosomal_L2_dom3
IPR014722Rib_L2_dom2
IPR013025Ribosomal_L25/23
IPR012678Ribosomal_L23/L15e_core_dom_sf
IPR012677Nucleotide-bd_a/b_plait_sf
IPR012340NA-bd_OB-fold
IPR008991Translation_prot_SH3-like_sf
IPR005880Ribosomal_L2_bac/org-type
IPR002171Ribosomal_L2
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0015934 large ribosomal subunit
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0016740 transferase activity
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi09G006030.1Lsi09G006030.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002171Ribosomal protein L2PANTHERPTHR13691RIBOSOMAL PROTEIN L2coord: 197..340
score: 5.0E-173coord: 63..162
score: 5.0E
IPR002171Ribosomal protein L2SMARTSM01383Ribosomal_L2_2coord: 73..148
score: 1.1
IPR005880Ribosomal protein L2, bacterial/organellar-typeHAMAPMF_01320_BRibosomal_L2_Bcoord: 13..339
score: 40
IPR005880Ribosomal protein L2, bacterial/organellar-typeTIGRFAMsTIGR01171TIGR01171coord: 197..339
score: 1.6
IPR008991Translation protein SH3-like domainunknownSSF50104Translation proteins SH3-like domaincoord: 198..337
score: 4.63
IPR012340Nucleic acid-binding, OB-foldGENE3DG3DSA:2.40.50.140coord: 73..144
score: 9.7
IPR012340Nucleic acid-binding, OB-foldunknownSSF50249Nucleic acid-binding proteinscoord: 68..155
score: 3.19
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 28..72
score: 3.9
IPR012678Ribosomal protein L23/L15e core domainunknownSSF54189Ribosomal proteins S24e, L23 and L15ecoord: 27..72
score: 5.76
IPR013025Ribosomal protein L25/L23PFAMPF00276Ribosomal_L23coord: 28..72
score: 1.
IPR014722Ribosomal protein L2 domain 2GENE3DG3DSA:2.30.30.30coord: 148..163
score: 8.2E-31coord: 198..259
score: 8.2
IPR014726Ribosomal protein L2, domain 3GENE3DG3DSA:4.10.950.10coord: 260..338
score: 2.5
IPR022666Ribosomal Proteins L2, RNA binding domainPFAMPF00181Ribosomal_L2coord: 73..148
score: 1.1
IPR022669Ribosomal protein L2, C-terminalPFAMPF03947Ribosomal_L2_Ccoord: 198..315
score: 6.5
IPR022669Ribosomal protein L2, C-terminalSMARTSM01382Ribosomal_L2_C_2coord: 154..317
score: 5.7
IPR022671Ribosomal protein L2, conserved sitePROSITEPS00467RIBOSOMAL_L2coord: 282..293
scor
NoneNo IPR availablePANTHERPTHR13691:SF1950S RIBOSOMAL PROTEIN L2, CHLOROPLASTICcoord: 63..162
score: 5.0E-173coord: 197..340
score: 5.0E

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi09G006030Cucumber (Gy14) v1cgylsiB452
Lsi09G006030Cucurbita maxima (Rimu)cmalsiB261
Lsi09G006030Cucurbita moschata (Rifu)cmolsiB248
Lsi09G006030Cucurbita moschata (Rifu)cmolsiB613
Lsi09G006030Cucurbita pepo (Zucchini)cpelsiB133
Lsi09G006030Wild cucumber (PI 183967)cpilsiB329
Lsi09G006030Cucumber (Chinese Long) v2culsiB329
Lsi09G006030Melon (DHL92) v3.5.1lsimeB013
Lsi09G006030Watermelon (Charleston Gray)lsiwcgB008
Lsi09G006030Watermelon (97103) v1lsiwmB030
Lsi09G006030Cucumber (Gy14) v2cgyblsiB301
Lsi09G006030Melon (DHL92) v3.6.1lsimedB013
Lsi09G006030Melon (DHL92) v3.6.1lsimedB017
Lsi09G006030Silver-seed gourdcarlsiB676
Lsi09G006030Cucumber (Chinese Long) v3cuclsiB352
Lsi09G006030Cucumber (Chinese Long) v3cuclsiB357
Lsi09G006030Watermelon (97103) v2lsiwmbB007
Lsi09G006030Watermelon (97103) v2lsiwmbB017
Lsi09G006030Wax gourdlsiwgoB006
Lsi09G006030Wax gourdlsiwgoB055