Lsi09G005730 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi09G005730
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr09 : 6176771 .. 6177752 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAAAAAAAAAAAACCGAAAACAGAGAGGAGGAGCGAGCGCAGTTCCCGACCATACATCGGTACGGGAAAGCAAACAAGAACGATAGAACAAACCAATCAAGTAGCGCAGTTCGATTGATTCAGCTGCGGCCAAGACTTTGATGATGATGATTAAGGCTCCTCATGTGGCGTTCCGTCGGGTTCTTCCATTGTTTGTTCACCGCAACCAACCATTTTCGGTTGTCTCCCGCCAAATCACTTCCAACTCTGTCTGCACCGCCGCCGTTGTCGCCGCAATTACCTCCACATCCACCACCGGCGTCCGTAGTAAGAGCAGTAATGTTCCGAAATATAGCCGTGCTAATGGAACATTCCCGAAATGGGGTTCGAGTCGGAACTTGAGCATTAGAGCCACTCAAGTGAATGATTCTGGATCTATTGATTCCCCTCTCATGCAGTCAATGGAGAACAAGGTAATTTTTGTTTAGTTCTTGGTTTCTTCATGGTTTTAGATTTATACTTTTCTACGTTTTCATTTATGTGAGCAAACCAGTGCGTATGCTCTTTGAGGGAAACTAGGGCAAGTTACTGAGCTGATTTAAGAGGAATGGAATCTCCCAGTCGATTCTAGTTCAGAAATGTTCTTAGTAGCCAGTGATAACGACCTTAACGCCGATTTTATGTGATGATTTTTGCTTATCTTTTGTTTTCATTTTAACATGTTATCAAACTTATGATTTTCAGTTTCTTTTCTGCAAATGCGTATTTGTTTGTAAGACGGATGTAGTTTGTGTTTCTCGCTTCAATATATTATCCACCAAGTTGTTTAGTTCTAAGCGGAGCCATGTTATTAGAAGGGCTACGAGCACAGCTAGTTGACTTATTCATCCCGAGGTCACCTGTGCCGAAAGTGGCATATGTAGAAATTGATGGCATACTTGATCAAAAATCAATTTATTCTCCAAAGAAAAGGATATGTCCTTCAACGAAATACAGATAG

mRNA sequence

AAAAAAAAAAAAAAAACCGAAAACAGAGAGGAGGAGCGAGCGCAGTTCCCGACCATACATCGGTACGGGAAAGCAAACAAGAACGATAGAACAAACCAATCAAGTAGCGCAGTTCGATTGATTCAGCTGCGGCCAAGACTTTGATGATGATGATTAAGGCTCCTCATGTGGCGTTCCGTCGGGTTCTTCCATTGTTTGTTCACCGCAACCAACCATTTTCGGTTGTCTCCCGCCAAATCACTTCCAACTCTGTCTGCACCGCCGCCGTTGTCGCCGCAATTACCTCCACATCCACCACCGGCGTCCGTAGTAAGAGCAGTAATGTTCCGAAATATAGCCGTGCTAATGGAACATTCCCGAAATGGGGTTCGAGTCGGAACTTGAGCATTAGAGCCACTCAAGTGAATGATTCTGGATCTATTGATTCCCCTCTCATGCAGTCAATGGAGAACAAGTTTGTGTTTCTCGCTTCAATATATTATCCACCAAGTTGTTTAGTTCTAAGCGGAGCCATGTTATTAGAAGGGCTACGAGCACAGCTAGTTGACTTATTCATCCCGAGGTCACCTGTGCCGAAAGTGGCATATGTAGAAATTGATGGCATACTTGATCAAAAATCAATTTATTCTCCAAAGAAAAGGATATGTCCTTCAACGAAATACAGATAG

Coding sequence (CDS)

ATGATGATGATTAAGGCTCCTCATGTGGCGTTCCGTCGGGTTCTTCCATTGTTTGTTCACCGCAACCAACCATTTTCGGTTGTCTCCCGCCAAATCACTTCCAACTCTGTCTGCACCGCCGCCGTTGTCGCCGCAATTACCTCCACATCCACCACCGGCGTCCGTAGTAAGAGCAGTAATGTTCCGAAATATAGCCGTGCTAATGGAACATTCCCGAAATGGGGTTCGAGTCGGAACTTGAGCATTAGAGCCACTCAAGTGAATGATTCTGGATCTATTGATTCCCCTCTCATGCAGTCAATGGAGAACAAGTTTGTGTTTCTCGCTTCAATATATTATCCACCAAGTTGTTTAGTTCTAAGCGGAGCCATGTTATTAGAAGGGCTACGAGCACAGCTAGTTGACTTATTCATCCCGAGGTCACCTGTGCCGAAAGTGGCATATGTAGAAATTGATGGCATACTTGATCAAAAATCAATTTATTCTCCAAAGAAAAGGATATGTCCTTCAACGAAATACAGATAG

Protein sequence

MMMIKAPHVAFRRVLPLFVHRNQPFSVVSRQITSNSVCTAAVVAAITSTSTTGVRSKSSNVPKYSRANGTFPKWGSSRNLSIRATQVNDSGSIDSPLMQSMENKFVFLASIYYPPSCLVLSGAMLLEGLRAQLVDLFIPRSPVPKVAYVEIDGILDQKSIYSPKKRICPSTKYR
Homology
[Close]
BLAST of Lsi09G005730 vs. TrEMBL
Match: A0A0A0KRR5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G172860 PE=3 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 2.2e-39
Identity = 89/103 (86.41%), Postives = 95/103 (92.23%), Query Frame = 1 

Query: 2   MMIKAPHVAFRRVLPLFVHRNQPFSVVSRQITSNSVCTAAVVAAITSTSTTGVRSKSSNV 61
           MMIK P VAFRRVLP+F+ RN+PFSVVSRQ+TSN VCT AVVA I STSTTG+RSKSSNV
Sbjct: 1   MMIKVPQVAFRRVLPIFLPRNRPFSVVSRQVTSNCVCTPAVVAVIISTSTTGLRSKSSNV 60

Query: 62  PKYSRANGTFPKWGSSRNLSIRATQVNDSGSIDSPLMQSMENK 105
            KYSRANGTFPKWGSSRNLSIRATQVN+SGSIDSPLMQSMENK
Sbjct: 61  AKYSRANGTFPKWGSSRNLSIRATQVNESGSIDSPLMQSMENK 103

[Close]
BLAST of Lsi09G005730 vs. NCBI nr
Match: gi|449451777|ref|XP_004143637.1| (PREDICTED: protein BOLA4, chloroplastic/mitochondrial [Cucumis sativus])

HSP 1 Score: 170.2 bits (430), Expect = 3.1e-39
Identity = 89/103 (86.41%), Postives = 95/103 (92.23%), Query Frame = 1 

Query: 2   MMIKAPHVAFRRVLPLFVHRNQPFSVVSRQITSNSVCTAAVVAAITSTSTTGVRSKSSNV 61
           MMIK P VAFRRVLP+F+ RN+PFSVVSRQ+TSN VCT AVVA I STSTTG+RSKSSNV
Sbjct: 1   MMIKVPQVAFRRVLPIFLPRNRPFSVVSRQVTSNCVCTPAVVAVIISTSTTGLRSKSSNV 60

Query: 62  PKYSRANGTFPKWGSSRNLSIRATQVNDSGSIDSPLMQSMENK 105
            KYSRANGTFPKWGSSRNLSIRATQVN+SGSIDSPLMQSMENK
Sbjct: 61  AKYSRANGTFPKWGSSRNLSIRATQVNESGSIDSPLMQSMENK 103

[Close]
BLAST of Lsi09G005730 vs. NCBI nr
Match: gi|659073074|ref|XP_008467240.1| (PREDICTED: uncharacterized protein LOC103504639 [Cucumis melo])

HSP 1 Score: 167.5 bits (423), Expect = 2.0e-38
Identity = 89/104 (85.58%), Postives = 94/104 (90.38%), Query Frame = 1 

Query: 1   MMMIKAPHVAFRRVLPLFVHRNQPFSVVSRQITSNSVCTAAVVAAITSTSTTGVRSKSSN 60
           M MIK P +AFRRVLP+ + RNQPFSVVSRQITSN VCTAAVVA ITS S TG+RSKSSN
Sbjct: 1   MTMIKVPQLAFRRVLPMLLPRNQPFSVVSRQITSNCVCTAAVVAVITSKSNTGLRSKSSN 60

Query: 61  VPKYSRANGTFPKWGSSRNLSIRATQVNDSGSIDSPLMQSMENK 105
           V KYSRANGTFPKWGSSRNLSIRATQVN+SGSIDSPLMQSMENK
Sbjct: 61  VVKYSRANGTFPKWGSSRNLSIRATQVNESGSIDSPLMQSMENK 104

The following BLAST results are available for this feature:
BLAST of Lsi09G005730 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi09G005730 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KRR5_CUCSA2.2e-3986.41Uncharacterized protein OS=Cucumis sativus GN=Csa_5G172860 PE=3 SV=1[more]
BLAST of Lsi09G005730 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi09G005730 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449451777|ref|XP_004143637.1|3.1e-3986.41PREDICTED: protein BOLA4, chloroplastic/mitochondrial [Cucumis sativus][more]
gi|659073074|ref|XP_008467240.1|2.0e-3885.58PREDICTED: uncharacterized protein LOC103504639 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi09G005730.1Lsi09G005730.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi09G005730Cla002349Watermelon (97103) v1lsiwmB030
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi09G005730Cucumber (Gy14) v1cgylsiB162
Lsi09G005730Cucurbita maxima (Rimu)cmalsiB261
Lsi09G005730Cucurbita maxima (Rimu)cmalsiB531
Lsi09G005730Cucurbita moschata (Rifu)cmolsiB248
Lsi09G005730Cucurbita moschata (Rifu)cmolsiB517
Lsi09G005730Cucurbita pepo (Zucchini)cpelsiB133
Lsi09G005730Cucurbita pepo (Zucchini)cpelsiB583
Lsi09G005730Wild cucumber (PI 183967)cpilsiB322
Lsi09G005730Cucumber (Chinese Long) v2culsiB322
Lsi09G005730Melon (DHL92) v3.5.1lsimeB013
Lsi09G005730Watermelon (Charleston Gray)lsiwcgB008
Lsi09G005730Cucumber (Gy14) v2cgyblsiB294
Lsi09G005730Melon (DHL92) v3.6.1lsimedB013
Lsi09G005730Silver-seed gourdcarlsiB648
Lsi09G005730Silver-seed gourdcarlsiB676
Lsi09G005730Cucumber (Chinese Long) v3cuclsiB345
Lsi09G005730Watermelon (97103) v2lsiwmbB007