Lsi09G004370 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi09G004370
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Ribosomal protein L15
Location	chr09 : 4639000 .. 4640282 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGCATACAAGTACGTGTCGGAGCTATGGAGGAAGAAGCAGTCCGATGTGATGAGATTTCTACAGAGGGTTAGATGCTGGGAGTATCGCCAACATCCATCCATTGTTCGCGTCAATCACCCCACTCGCCCTGATAAAGCCCGCCGTCTTGGTTACAAGGCCAAGCAGGTTAGAAAATTTGCTAATATTTCCTTATAAAGTTGTTTGTGTCTAGCCTTCCTGAGTTTTTTTTCTAGGTAATTTGGTTAGCACATTTTCAGTTATCACATCATTGAAATTTTTGGTATCCTTACTATATTTTGTTCCTAATGTTTTTCATTTTCTTCGGTAATTTATTGTTTGGAATTTCTAGAGTAATATTGCATTTTGTCTGTCTAACTTGGATTATTTGACGGTTTTGTACACTCTTTAATTAGGAATTGGTTGTCTGCTTCTGCCACGATTTTGTTGGCATTTGGAACTTTTTCAGTTTTTAGTATTCGGTTTGGGTATTACACATTGAAGTTTTAAACTATTAGCACATTCTTTTTCGAGAAGAAGAAAATAAAATCATGATATAACCAACCTTATTGACAAATGAGCTGATGTGCAGAGTCTTCCCTCATACTTTCTGGTTGAGTTTTCATTTTTTTTCTGGAACGATGTGGATATCATTTGCTTCAGCCGCAATAGTGAGCTCACAATTTTGTTGCAGGGTTATGTGGTTTACAGGGTCCGAGTGAGACGCGGTGGTAGGAAGAGGCCAGTTCCCAAGGGTATTGTGTATGGGAAGCCAACCAACCAGGGTGTTACCCAATTGAAGTTCCAGCGCAGCAAGCGATCAGTTGCAGAAGAACGAGCAGGGCGAAAGTTGGGTGGTTTGAGGGTTCTCAACTCGTACTGGATCAATGAGGTAATTGACTATACCTCCTTTTTTTCATTAGATAACTCGAGGCAAGGAGCAATGGGTGCATCTGAAATTGTGTGTACAACTTTTTAAATCCTTGCATACCATTCTCTGTCGTACCTACACTTTTCTGACTGTTCTTGAAATCGAAACAGGATTCTACCTACAAATACTATGAGGTGATTTTGGTCGATGTTGCCCGTAATGCAGTTCGAAATGACCCAAGAATCAACTGGATCTGCAATCCAGTCCACAAGCACAGGGAGCTCAGAGGACTTACATCCGCCGGCAAGAAGTACAGGGGTCTTCGTGGAAAAGGACACTTGCACCACAAGGCCAGGCCTTCTCGCAGAGCGACCTGGAAGAGGAACAACACTCTCTCCCTGCGTCGTTATCGT

mRNA sequence

GGGCATACAAGTACGTGTCGGAGCTATGGAGGAAGAAGCAGTCCGATGTGATGAGATTTCTACAGAGGGTTAGATGCTGGGAGTATCGCCAACATCCATCCATTGTTCGCGTCAATCACCCCACTCGCCCTGATAAAGCCCGCCGTCTTGGTTACAAGGCCAAGCAGGGTTATGTGGTTTACAGGGTCCGAGTGAGACGCGGTGGTAGGAAGAGGCCAGTTCCCAAGGGTATTGTGTATGGGAAGCCAACCAACCAGGGTGTTACCCAATTGAAGTTCCAGCGCAGCAAGCGATCAGTTGCAGAAGAACGAGCAGGGCGAAAGTTGGGTGGTTTGAGGGTTCTCAACTCGTACTGGATCAATGAGATAACTCGAGGCAAGGAGCAATGGGTGCATCTGAAATTGTGTGTACAACTTTTTAAATCCTTGCATACCATTCTCTGTCGTACCTACACTTTTCTGACTGATTCTACCTACAAATACTATGAGGTGATTTTGGTCGATGTTGCCCGTAATGCAGTTCGAAATGACCCAAGAATCAACTGGATCTGCAATCCAGTCCACAAGCACAGGGAGCTCAGAGGACTTACATCCGCCGGCAAGAAGTACAGGGGTCTTCGTGGAAAAGGACACTTGCACCACAAGGCCAGGCCTTCTCGCAGAGCGACCTGGAAGAGGAACAACACTCTCTCCCTGCGTCGTTATCGT

Coding sequence (CDS)

ATGAGATTTCTACAGAGGGTTAGATGCTGGGAGTATCGCCAACATCCATCCATTGTTCGCGTCAATCACCCCACTCGCCCTGATAAAGCCCGCCGTCTTGGTTACAAGGCCAAGCAGGGTTATGTGGTTTACAGGGTCCGAGTGAGACGCGGTGGTAGGAAGAGGCCAGTTCCCAAGGGTATTGTGTATGGGAAGCCAACCAACCAGGGTGTTACCCAATTGAAGTTCCAGCGCAGCAAGCGATCAGTTGCAGAAGAACGAGCAGGGCGAAAGTTGGGTGGTTTGAGGGTTCTCAACTCGTACTGGATCAATGAGATAACTCGAGGCAAGGAGCAATGGGTGCATCTGAAATTGTGTGTACAACTTTTTAAATCCTTGCATACCATTCTCTGTCGTACCTACACTTTTCTGACTGATTCTACCTACAAATACTATGAGGTGATTTTGGTCGATGTTGCCCGTAATGCAGTTCGAAATGACCCAAGAATCAACTGGATCTGCAATCCAGTCCACAAGCACAGGGAGCTCAGAGGACTTACATCCGCCGGCAAGAAGTACAGGGGTCTTCGTGGAAAAGGACACTTGCACCACAAGGCCAGGCCTTCTCGCAGAGCGACCTGGAAGAGGAACAACACTCTCTCCCTGCGTCGTTATCGT

Protein sequence

MRFLQRVRCWEYRQHPSIVRVNHPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEITRGKEQWVHLKLCVQLFKSLHTILCRTYTFLTDSTYKYYEVILVDVARNAVRNDPRINWICNPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNNTLSLRRYR

Homology

[Close]

BLAST of Lsi09G004370 vs. Swiss-Prot
Match: RL15B_PICMA (60S ribosomal protein L15-2 OS=Picea mariana GN=SB62 PE=2 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 5.7e-83
Identity = 160/219 (73.06%), Postives = 169/219 (77.17%), Query Frame = 1


Query: 1   MRFLQRVRCWEYRQHPSIVRVNHPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG 60
           MRFLQRVRCWEYRQ P IVR+ HPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG
Sbjct: 19  MRFLQRVRCWEYRQLPGIVRITHPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG 78

Query: 61  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEITRGKEQWVHLKLCV 120
           IVYGKP NQG+TQLKFQRS RSVAEERAGRKLGGLRVLNSYWIN+ +  K         V
Sbjct: 79  IVYGKPKNQGITQLKFQRSLRSVAEERAGRKLGGLRVLNSYWINQDSTYKYYE------V 138

Query: 121 QLFKSLHTILCRTYTFLTDSTYKYYEVILVDVARNAVRNDPRINWICNPVHKHRELRGLT 180
            L    HT+                           +RNDPRINWICN VHKHRELRGLT
Sbjct: 139 VLVDQAHTV---------------------------IRNDPRINWICNAVHKHRELRGLT 198

Query: 181 SAGKKYRGLRGKGHLHHKARPSRRATWKRNNTLSLRRYR 220
           SAGKKYRGLRG+GHL+HKARPS+RATWKRNNTLSLRRYR
Sbjct: 199 SAGKKYRGLRGRGHLYHKARPSKRATWKRNNTLSLRRYR 204

[Close]

BLAST of Lsi09G004370 vs. Swiss-Prot
Match: RL15_PETHY (60S ribosomal protein L15 OS=Petunia hybrida GN=RPL15 PE=2 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 6.3e-82
Identity = 161/219 (73.52%), Postives = 169/219 (77.17%), Query Frame = 1


Query: 1   MRFLQRVRCWEYRQHPSIVRVNHPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG 60
           MRFLQRVRCWEYRQ PSIVRV  PTRPDKARRLGYKAKQGYVVYRVRV+RGGRKRPVPKG
Sbjct: 19  MRFLQRVRCWEYRQLPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVKRGGRKRPVPKG 78

Query: 61  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEITRGKEQWVHLKLCV 120
           IVYGKPTNQGVTQLKFQR+KRSVAEERAGRKLGGLRVLNSYWINE +             
Sbjct: 79  IVYGKPTNQGVTQLKFQRTKRSVAEERAGRKLGGLRVLNSYWINEDS------------- 138

Query: 121 QLFKSLHTILCRTYTFLTDSTYKYYEVILVDVARNAVRNDPRINWICNPVHKHRELRGLT 180
             +K    I       L D  +             A+RNDPRINWICNPVHKHRELRGLT
Sbjct: 139 -TYKYFEVI-------LVDQAHA------------AIRNDPRINWICNPVHKHRELRGLT 198

Query: 181 SAGKKYRGLRGKGHLHHKARPSRRATWKRNNTLSLRRYR 220
           SAGKKYRGLRG+GHLH+KA PSRRA WKRN TLSL RYR
Sbjct: 199 SAGKKYRGLRGRGHLHNKAPPSRRANWKRNQTLSLPRYR 204

[Close]

BLAST of Lsi09G004370 vs. Swiss-Prot
Match: RL15A_PICMA (60S ribosomal protein L15-1 OS=Picea mariana GN=SB61 PE=2 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 1.2e-80
Identity = 156/219 (71.23%), Postives = 168/219 (76.71%), Query Frame = 1


Query: 1   MRFLQRVRCWEYRQHPSIVRVNHPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG 60
           MRFLQRVRCWE+RQ P IVRV  P+RPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG
Sbjct: 19  MRFLQRVRCWEFRQLPGIVRVTRPSRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG 78

Query: 61  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEITRGKEQWVHLKLCV 120
           IVYGKP NQG+TQLKFQRS RSVAEERAGRKLGGLRVLNSYWIN+ +  K   +      
Sbjct: 79  IVYGKPKNQGITQLKFQRSLRSVAEERAGRKLGGLRVLNSYWINQDSTYKYYEI------ 138

Query: 121 QLFKSLHTILCRTYTFLTDSTYKYYEVILVDVARNAVRNDPRINWICNPVHKHRELRGLT 180
                           L D  +            +A+R DPRINWICN VHKHRELRGLT
Sbjct: 139 ---------------ILVDQAH------------SAIRKDPRINWICNAVHKHRELRGLT 198

Query: 181 SAGKKYRGLRGKGHLHHKARPSRRATWKRNNTLSLRRYR 220
           SAGKKYRGLRG+GHL+HKARPS+RATWKRNNTLSLRRYR
Sbjct: 199 SAGKKYRGLRGRGHLYHKARPSKRATWKRNNTLSLRRYR 204

[Close]

BLAST of Lsi09G004370 vs. Swiss-Prot
Match: RL151_ARATH (60S ribosomal protein L15-1 OS=Arabidopsis thaliana GN=RPL15A PE=2 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 2.3e-79
Identity = 156/219 (71.23%), Postives = 166/219 (75.80%), Query Frame = 1


Query: 1   MRFLQRVRCWEYRQHPSIVRVNHPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG 60
           MRFLQRVRCWEYRQ PSIVR+  PTRPDKARRLGYKAKQG+VVYRVRVRRGGRKRPVPKG
Sbjct: 19  MRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFVVYRVRVRRGGRKRPVPKG 78

Query: 61  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEITRGKEQWVHLKLCV 120
           IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRV+NSYW+NE +  K   +      
Sbjct: 79  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYWLNEDSTYKYYEI------ 138

Query: 121 QLFKSLHTILCRTYTFLTDSTYKYYEVILVDVARNAVRNDPRINWICNPVHKHRELRGLT 180
                           L D  +               RNDPRINWICNPVHKHRELRGLT
Sbjct: 139 ---------------ILVDPAHNAV------------RNDPRINWICNPVHKHRELRGLT 198

Query: 181 SAGKKYRGLRGKGHLHHKARPSRRATWKRNNTLSLRRYR 220
           S GKK RGLRGKGH +HK RPSRRATWK+NN+LSLRRYR
Sbjct: 199 SEGKKNRGLRGKGHNNHKNRPSRRATWKKNNSLSLRRYR 204

[Close]

BLAST of Lsi09G004370 vs. Swiss-Prot
Match: RL152_ARATH (60S ribosomal protein L15-2 OS=Arabidopsis thaliana GN=RPL15B PE=2 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 3.8e-79
Identity = 155/219 (70.78%), Postives = 166/219 (75.80%), Query Frame = 1


Query: 1   MRFLQRVRCWEYRQHPSIVRVNHPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG 60
           MRFLQRVRCWEYRQ PSIVR+  PTRPDKARRLGYKAKQG+VVYRVRVRRGGRKRPVPKG
Sbjct: 19  MRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFVVYRVRVRRGGRKRPVPKG 78

Query: 61  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEITRGKEQWVHLKLCV 120
           IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRV+NSYW+NE +  K   +      
Sbjct: 79  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYWLNEDSTYKYYEI------ 138

Query: 121 QLFKSLHTILCRTYTFLTDSTYKYYEVILVDVARNAVRNDPRINWICNPVHKHRELRGLT 180
                           L D  +               RNDPRINWICNPVHKHRELRGLT
Sbjct: 139 ---------------ILVDPAHNAV------------RNDPRINWICNPVHKHRELRGLT 198

Query: 181 SAGKKYRGLRGKGHLHHKARPSRRATWKRNNTLSLRRYR 220
           S GKK RGLRGKGH +HK RPSRRATWK+NN++SLRRYR
Sbjct: 199 SEGKKNRGLRGKGHNNHKNRPSRRATWKKNNSISLRRYR 204

[Close]

BLAST of Lsi09G004370 vs. TrEMBL
Match: A0A0B0PCZ3_GOSAR (Ribosomal protein L15 OS=Gossypium arboreum GN=F383_08565 PE=3 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 2.3e-86
Identity = 170/219 (77.63%), Postives = 175/219 (79.91%), Query Frame = 1


Query: 1   MRFLQRVRCWEYRQHPSIVRVNHPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG 60
           MRFLQRVRCWEYRQHPSIVRVNHPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG
Sbjct: 19  MRFLQRVRCWEYRQHPSIVRVNHPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG 78

Query: 61  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEITRGKEQWVHLKLCV 120
           IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRV+NSYWINE +             
Sbjct: 79  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYWINEDS------------- 138

Query: 121 QLFKSLHTILCRTYTFLTDSTYKYYEVILVDVARNAVRNDPRINWICNPVHKHRELRGLT 180
             +K    I       L D  +              +RNDPRINWICNPVHKHRELRGLT
Sbjct: 139 -TYKYFEVI-------LVDPAHNA------------IRNDPRINWICNPVHKHRELRGLT 198

Query: 181 SAGKKYRGLRGKGHLHHKARPSRRATWKRNNTLSLRRYR 220
           SAGKKYRGLRGKGHLHHKARPSRRATWKRNNTLSLRRYR
Sbjct: 199 SAGKKYRGLRGKGHLHHKARPSRRATWKRNNTLSLRRYR 204

[Close]

BLAST of Lsi09G004370 vs. TrEMBL
Match: A0A0D2PUM3_GOSRA (Ribosomal protein L15 OS=Gossypium raimondii GN=B456_001G049600 PE=3 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 2.3e-86
Identity = 170/219 (77.63%), Postives = 175/219 (79.91%), Query Frame = 1


Query: 1   MRFLQRVRCWEYRQHPSIVRVNHPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG 60
           MRFLQRVRCWEYRQHPSIVRVNHPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG
Sbjct: 19  MRFLQRVRCWEYRQHPSIVRVNHPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG 78

Query: 61  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEITRGKEQWVHLKLCV 120
           IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRV+NSYWINE +             
Sbjct: 79  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYWINEDS------------- 138

Query: 121 QLFKSLHTILCRTYTFLTDSTYKYYEVILVDVARNAVRNDPRINWICNPVHKHRELRGLT 180
             +K    I       L D  +              +RNDPRINWICNPVHKHRELRGLT
Sbjct: 139 -TYKYFEVI-------LVDPAHNA------------IRNDPRINWICNPVHKHRELRGLT 198

Query: 181 SAGKKYRGLRGKGHLHHKARPSRRATWKRNNTLSLRRYR 220
           SAGKKYRGLRGKGHLHHKARPSRRATWKRNNTLSLRRYR
Sbjct: 199 SAGKKYRGLRGKGHLHHKARPSRRATWKRNNTLSLRRYR 204

[Close]

BLAST of Lsi09G004370 vs. TrEMBL
Match: A0A0B0MN21_GOSAR (Ribosomal protein L15 OS=Gossypium arboreum GN=F383_00145 PE=3 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 5.0e-86
Identity = 169/219 (77.17%), Postives = 175/219 (79.91%), Query Frame = 1


Query: 1   MRFLQRVRCWEYRQHPSIVRVNHPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG 60
           MRFLQRVRCWEYRQHPSIVRVNHPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG
Sbjct: 19  MRFLQRVRCWEYRQHPSIVRVNHPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG 78

Query: 61  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEITRGKEQWVHLKLCV 120
           IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRV+NSYWINE +             
Sbjct: 79  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYWINEDS------------- 138

Query: 121 QLFKSLHTILCRTYTFLTDSTYKYYEVILVDVARNAVRNDPRINWICNPVHKHRELRGLT 180
             +K    I       L D+ +              +RNDPRINWICNPVHKHRELRGLT
Sbjct: 139 -TYKYFEVI-------LVDTAHNA------------IRNDPRINWICNPVHKHRELRGLT 198

Query: 181 SAGKKYRGLRGKGHLHHKARPSRRATWKRNNTLSLRRYR 220
           SAGKKYRGLRGKGHLHHKARPSRRA WKRNNTLSLRRYR
Sbjct: 199 SAGKKYRGLRGKGHLHHKARPSRRANWKRNNTLSLRRYR 204

[Close]

BLAST of Lsi09G004370 vs. TrEMBL
Match: A0A0D2QLI4_GOSRA (Ribosomal protein L15 OS=Gossypium raimondii GN=B456_007G046500 PE=3 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 5.0e-86
Identity = 169/219 (77.17%), Postives = 175/219 (79.91%), Query Frame = 1


Query: 1   MRFLQRVRCWEYRQHPSIVRVNHPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG 60
           MRFLQRVRCWEYRQHPSIVRVNHPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG
Sbjct: 19  MRFLQRVRCWEYRQHPSIVRVNHPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG 78

Query: 61  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEITRGKEQWVHLKLCV 120
           IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRV+NSYWINE +             
Sbjct: 79  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYWINEDS------------- 138

Query: 121 QLFKSLHTILCRTYTFLTDSTYKYYEVILVDVARNAVRNDPRINWICNPVHKHRELRGLT 180
             +K    I       L D+ +              +RNDPRINWICNPVHKHRELRGLT
Sbjct: 139 -TYKYFEVI-------LVDTAHNA------------IRNDPRINWICNPVHKHRELRGLT 198

Query: 181 SAGKKYRGLRGKGHLHHKARPSRRATWKRNNTLSLRRYR 220
           SAGKKYRGLRGKGHLHHKARPSRRA WKRNNTLSLRRYR
Sbjct: 199 SAGKKYRGLRGKGHLHHKARPSRRANWKRNNTLSLRRYR 204

[Close]

BLAST of Lsi09G004370 vs. TrEMBL
Match: A0A061G0D2_THECC (Ribosomal protein L15 OS=Theobroma cacao GN=TCM_014898 PE=3 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 1.9e-85
Identity = 168/219 (76.71%), Postives = 174/219 (79.45%), Query Frame = 1


Query: 1   MRFLQRVRCWEYRQHPSIVRVNHPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG 60
           MRFLQRVRCWEYRQHPSIVRVNHPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG
Sbjct: 19  MRFLQRVRCWEYRQHPSIVRVNHPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG 78

Query: 61  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEITRGKEQWVHLKLCV 120
           IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRV+NSYWINE +             
Sbjct: 79  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYWINEDS------------- 138

Query: 121 QLFKSLHTILCRTYTFLTDSTYKYYEVILVDVARNAVRNDPRINWICNPVHKHRELRGLT 180
             +K    I       L D  +              +RNDPRINWICNPVHKHRELRGLT
Sbjct: 139 -TYKYFEVI-------LVDPAHNA------------IRNDPRINWICNPVHKHRELRGLT 198

Query: 181 SAGKKYRGLRGKGHLHHKARPSRRATWKRNNTLSLRRYR 220
           SAGKKYRGLRG+GHLHHKARPSRRA WKRNNTLSLRRYR
Sbjct: 199 SAGKKYRGLRGRGHLHHKARPSRRANWKRNNTLSLRRYR 204

[Close]

BLAST of Lsi09G004370 vs. TAIR10
Match: AT4G16720.1 (AT4G16720.1 Ribosomal protein L23/L15e family protein)

HSP 1 Score: 296.6 bits (758), Expect = 1.3e-80
Identity = 156/219 (71.23%), Postives = 166/219 (75.80%), Query Frame = 1


Query: 1   MRFLQRVRCWEYRQHPSIVRVNHPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG 60
           MRFLQRVRCWEYRQ PSIVR+  PTRPDKARRLGYKAKQG+VVYRVRVRRGGRKRPVPKG
Sbjct: 19  MRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFVVYRVRVRRGGRKRPVPKG 78

Query: 61  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEITRGKEQWVHLKLCV 120
           IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRV+NSYW+NE +  K   +      
Sbjct: 79  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYWLNEDSTYKYYEI------ 138

Query: 121 QLFKSLHTILCRTYTFLTDSTYKYYEVILVDVARNAVRNDPRINWICNPVHKHRELRGLT 180
                           L D  +               RNDPRINWICNPVHKHRELRGLT
Sbjct: 139 ---------------ILVDPAHNAV------------RNDPRINWICNPVHKHRELRGLT 198

Query: 181 SAGKKYRGLRGKGHLHHKARPSRRATWKRNNTLSLRRYR 220
           S GKK RGLRGKGH +HK RPSRRATWK+NN+LSLRRYR
Sbjct: 199 SEGKKNRGLRGKGHNNHKNRPSRRATWKKNNSLSLRRYR 204

[Close]

BLAST of Lsi09G004370 vs. TAIR10
Match: AT4G17390.1 (AT4G17390.1 Ribosomal protein L23/L15e family protein)

HSP 1 Score: 295.8 bits (756), Expect = 2.2e-80
Identity = 155/219 (70.78%), Postives = 166/219 (75.80%), Query Frame = 1


Query: 1   MRFLQRVRCWEYRQHPSIVRVNHPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG 60
           MRFLQRVRCWEYRQ PSIVR+  PTRPDKARRLGYKAKQG+VVYRVRVRRGGRKRPVPKG
Sbjct: 19  MRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFVVYRVRVRRGGRKRPVPKG 78

Query: 61  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEITRGKEQWVHLKLCV 120
           IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRV+NSYW+NE +  K   +      
Sbjct: 79  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYWLNEDSTYKYYEI------ 138

Query: 121 QLFKSLHTILCRTYTFLTDSTYKYYEVILVDVARNAVRNDPRINWICNPVHKHRELRGLT 180
                           L D  +               RNDPRINWICNPVHKHRELRGLT
Sbjct: 139 ---------------ILVDPAHNAV------------RNDPRINWICNPVHKHRELRGLT 198

Query: 181 SAGKKYRGLRGKGHLHHKARPSRRATWKRNNTLSLRRYR 220
           S GKK RGLRGKGH +HK RPSRRATWK+NN++SLRRYR
Sbjct: 199 SEGKKNRGLRGKGHNNHKNRPSRRATWKKNNSISLRRYR 204

[Close]

BLAST of Lsi09G004370 vs. NCBI nr
Match: gi|823121420|ref|XP_012466674.1| (PREDICTED: 60S ribosomal protein L15-1-like [Gossypium raimondii])

HSP 1 Score: 326.6 bits (836), Expect = 3.2e-86
Identity = 170/219 (77.63%), Postives = 175/219 (79.91%), Query Frame = 1


Query: 1   MRFLQRVRCWEYRQHPSIVRVNHPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG 60
           MRFLQRVRCWEYRQHPSIVRVNHPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG
Sbjct: 19  MRFLQRVRCWEYRQHPSIVRVNHPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG 78

Query: 61  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEITRGKEQWVHLKLCV 120
           IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRV+NSYWINE +             
Sbjct: 79  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYWINEDS------------- 138

Query: 121 QLFKSLHTILCRTYTFLTDSTYKYYEVILVDVARNAVRNDPRINWICNPVHKHRELRGLT 180
             +K    I       L D  +              +RNDPRINWICNPVHKHRELRGLT
Sbjct: 139 -TYKYFEVI-------LVDPAHNA------------IRNDPRINWICNPVHKHRELRGLT 198

Query: 181 SAGKKYRGLRGKGHLHHKARPSRRATWKRNNTLSLRRYR 220
           SAGKKYRGLRGKGHLHHKARPSRRATWKRNNTLSLRRYR
Sbjct: 199 SAGKKYRGLRGKGHLHHKARPSRRATWKRNNTLSLRRYR 204

[Close]

BLAST of Lsi09G004370 vs. NCBI nr
Match: gi|823184065|ref|XP_012489073.1| (PREDICTED: 60S ribosomal protein L15 [Gossypium raimondii])

HSP 1 Score: 325.5 bits (833), Expect = 7.2e-86
Identity = 169/219 (77.17%), Postives = 175/219 (79.91%), Query Frame = 1


Query: 1   MRFLQRVRCWEYRQHPSIVRVNHPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG 60
           MRFLQRVRCWEYRQHPSIVRVNHPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG
Sbjct: 19  MRFLQRVRCWEYRQHPSIVRVNHPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG 78

Query: 61  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEITRGKEQWVHLKLCV 120
           IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRV+NSYWINE +             
Sbjct: 79  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYWINEDS------------- 138

Query: 121 QLFKSLHTILCRTYTFLTDSTYKYYEVILVDVARNAVRNDPRINWICNPVHKHRELRGLT 180
             +K    I       L D+ +              +RNDPRINWICNPVHKHRELRGLT
Sbjct: 139 -TYKYFEVI-------LVDTAHNA------------IRNDPRINWICNPVHKHRELRGLT 198

Query: 181 SAGKKYRGLRGKGHLHHKARPSRRATWKRNNTLSLRRYR 220
           SAGKKYRGLRGKGHLHHKARPSRRA WKRNNTLSLRRYR
Sbjct: 199 SAGKKYRGLRGKGHLHHKARPSRRANWKRNNTLSLRRYR 204

[Close]

BLAST of Lsi09G004370 vs. NCBI nr
Match: gi|590671477|ref|XP_007038342.1| (Ribosomal protein L23/L15e family protein [Theobroma cacao])

HSP 1 Score: 323.6 bits (828), Expect = 2.7e-85
Identity = 168/219 (76.71%), Postives = 174/219 (79.45%), Query Frame = 1


Query: 1   MRFLQRVRCWEYRQHPSIVRVNHPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG 60
           MRFLQRVRCWEYRQHPSIVRVNHPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG
Sbjct: 19  MRFLQRVRCWEYRQHPSIVRVNHPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG 78

Query: 61  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEITRGKEQWVHLKLCV 120
           IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRV+NSYWINE +             
Sbjct: 79  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYWINEDS------------- 138

Query: 121 QLFKSLHTILCRTYTFLTDSTYKYYEVILVDVARNAVRNDPRINWICNPVHKHRELRGLT 180
             +K    I       L D  +              +RNDPRINWICNPVHKHRELRGLT
Sbjct: 139 -TYKYFEVI-------LVDPAHNA------------IRNDPRINWICNPVHKHRELRGLT 198

Query: 181 SAGKKYRGLRGKGHLHHKARPSRRATWKRNNTLSLRRYR 220
           SAGKKYRGLRG+GHLHHKARPSRRA WKRNNTLSLRRYR
Sbjct: 199 SAGKKYRGLRGRGHLHHKARPSRRANWKRNNTLSLRRYR 204

[Close]

BLAST of Lsi09G004370 vs. NCBI nr
Match: gi|567895580|ref|XP_006440278.1| (hypothetical protein CICLE_v10024403mg [Citrus clementina])

HSP 1 Score: 321.6 bits (823), Expect = 1.0e-84
Identity = 168/219 (76.71%), Postives = 173/219 (79.00%), Query Frame = 1


Query: 1   MRFLQRVRCWEYRQHPSIVRVNHPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG 60
           MRFLQRVRCWEYRQHPSIVRV  PTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG
Sbjct: 45  MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG 104

Query: 61  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEITRGKEQWVHLKLCV 120
           IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINE +             
Sbjct: 105 IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDS------------- 164

Query: 121 QLFKSLHTILCRTYTFLTDSTYKYYEVILVDVARNAVRNDPRINWICNPVHKHRELRGLT 180
             +K    I       L D  +              +RNDPRINW+CNPVHKHRELRGLT
Sbjct: 165 -TYKYFEVI-------LVDPAHNA------------IRNDPRINWLCNPVHKHRELRGLT 224

Query: 181 SAGKKYRGLRGKGHLHHKARPSRRATWKRNNTLSLRRYR 220
           SAGKKYRGLRGKGHLHHKARPSRRATWKRNNTLSLRRYR
Sbjct: 225 SAGKKYRGLRGKGHLHHKARPSRRATWKRNNTLSLRRYR 230

[Close]

BLAST of Lsi09G004370 vs. NCBI nr
Match: gi|568846642|ref|XP_006477158.1| (PREDICTED: 60S ribosomal protein L15 [Citrus sinensis])

HSP 1 Score: 321.6 bits (823), Expect = 1.0e-84
Identity = 168/219 (76.71%), Postives = 173/219 (79.00%), Query Frame = 1


Query: 1   MRFLQRVRCWEYRQHPSIVRVNHPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG 60
           MRFLQRVRCWEYRQHPSIVRV  PTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG
Sbjct: 19  MRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKG 78

Query: 61  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEITRGKEQWVHLKLCV 120
           IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINE +             
Sbjct: 79  IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEDS------------- 138

Query: 121 QLFKSLHTILCRTYTFLTDSTYKYYEVILVDVARNAVRNDPRINWICNPVHKHRELRGLT 180
             +K    I       L D  +              +RNDPRINW+CNPVHKHRELRGLT
Sbjct: 139 -TYKYFEVI-------LVDPAHNA------------IRNDPRINWLCNPVHKHRELRGLT 198

Query: 181 SAGKKYRGLRGKGHLHHKARPSRRATWKRNNTLSLRRYR 220
           SAGKKYRGLRGKGHLHHKARPSRRATWKRNNTLSLRRYR
Sbjct: 199 SAGKKYRGLRGKGHLHHKARPSRRATWKRNNTLSLRRYR 204

The following BLAST results are available for this feature:

BLAST of Lsi09G004370 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL15B_PICMA	5.7e-83	73.06	60S ribosomal protein L15-2 OS=Picea mariana GN=SB62 PE=2 SV=1	[more]
RL15_PETHY	6.3e-82	73.52	60S ribosomal protein L15 OS=Petunia hybrida GN=RPL15 PE=2 SV=1	[more]
RL15A_PICMA	1.2e-80	71.23	60S ribosomal protein L15-1 OS=Picea mariana GN=SB61 PE=2 SV=1	[more]
RL151_ARATH	2.3e-79	71.23	60S ribosomal protein L15-1 OS=Arabidopsis thaliana GN=RPL15A PE=2 SV=1	[more]
RL152_ARATH	3.8e-79	70.78	60S ribosomal protein L15-2 OS=Arabidopsis thaliana GN=RPL15B PE=2 SV=1	[more]

BLAST of Lsi09G004370 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0B0PCZ3_GOSAR	2.3e-86	77.63	Ribosomal protein L15 OS=Gossypium arboreum GN=F383_08565 PE=3 SV=1	[more]
A0A0D2PUM3_GOSRA	2.3e-86	77.63	Ribosomal protein L15 OS=Gossypium raimondii GN=B456_001G049600 PE=3 SV=1	[more]
A0A0B0MN21_GOSAR	5.0e-86	77.17	Ribosomal protein L15 OS=Gossypium arboreum GN=F383_00145 PE=3 SV=1	[more]
A0A0D2QLI4_GOSRA	5.0e-86	77.17	Ribosomal protein L15 OS=Gossypium raimondii GN=B456_007G046500 PE=3 SV=1	[more]
A0A061G0D2_THECC	1.9e-85	76.71	Ribosomal protein L15 OS=Theobroma cacao GN=TCM_014898 PE=3 SV=1	[more]

BLAST of Lsi09G004370 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G16720.1	1.3e-80	71.23	Ribosomal protein L23/L15e family protein	[more]
AT4G17390.1	2.2e-80	70.78	Ribosomal protein L23/L15e family protein	[more]

BLAST of Lsi09G004370 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|823121420\|ref\|XP_012466674.1\|	3.2e-86	77.63	PREDICTED: 60S ribosomal protein L15-1-like [Gossypium raimondii]	[more]
gi\|823184065\|ref\|XP_012489073.1\|	7.2e-86	77.17	PREDICTED: 60S ribosomal protein L15 [Gossypium raimondii]	[more]
gi\|590671477\|ref\|XP_007038342.1\|	2.7e-85	76.71	Ribosomal protein L23/L15e family protein [Theobroma cacao]	[more]
gi\|567895580\|ref\|XP_006440278.1\|	1.0e-84	76.71	hypothetical protein CICLE_v10024403mg [Citrus clementina]	[more]
gi\|568846642\|ref\|XP_006477158.1\|	1.0e-84	76.71	PREDICTED: 60S ribosomal protein L15 [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR024794	Rbsml_L15e_core_dom_sf
IPR020925	Ribosomal_L15e_CS
IPR012678	Ribosomal_L23/L15e_core_dom_sf
IPR000439	Ribosomal_L15e

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0016020	membrane
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G004370.1	Lsi09G004370.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000439	Ribosomal protein L15e	PANTHER	PTHR11847	RIBOSOMAL PROTEIN L15	coord: 139..219 score: 5.5E-150coord: 1..105 score: 5.5E
IPR000439	Ribosomal protein L15e	PFAM	PF00827	Ribosomal_L15e	coord: 133..205 score: 3.0E-30coord: 1..105 score: 4.3
IPR000439	Ribosomal protein L15e	SMART	SM01384	Ribosomal_L15e_2	coord: 1..208 score: 2.1E
IPR012678	Ribosomal protein L23/L15e core domain	unknown	SSF54189	Ribosomal proteins S24e, L23 and L15e	coord: 1..105 score: 4.46E-49coord: 133..210 score: 9.59
IPR020925	Ribosomal protein L15e, conserved site	PROSITE	PS01194	RIBOSOMAL_L15E	coord: 28..51 scor
IPR024794	Ribosomal protein L15e core domain	GENE3D	G3DSA:3.40.1120.10		coord: 1..105 score: 6.0E-55coord: 133..210 score: 2.1

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi09G004370	Wax gourd	lsiwgoB010
Lsi09G004370	Bottle gourd (USVL1VR-Ls)	lsilsiB019
Lsi09G004370	Cucumber (Gy14) v1	cgylsiB526
Lsi09G004370	Cucurbita maxima (Rimu)	cmalsiB267
Lsi09G004370	Cucurbita maxima (Rimu)	cmalsiB533
Lsi09G004370	Cucurbita maxima (Rimu)	cmalsiB537
Lsi09G004370	Cucurbita moschata (Rifu)	cmolsiB255
Lsi09G004370	Cucurbita moschata (Rifu)	cmolsiB519
Lsi09G004370	Cucurbita moschata (Rifu)	cmolsiB522
Lsi09G004370	Cucurbita pepo (Zucchini)	cpelsiB131
Lsi09G004370	Cucurbita pepo (Zucchini)	cpelsiB580
Lsi09G004370	Cucurbita pepo (Zucchini)	cpelsiB585
Lsi09G004370	Wild cucumber (PI 183967)	cpilsiB154
Lsi09G004370	Wild cucumber (PI 183967)	cpilsiB322
Lsi09G004370	Cucumber (Chinese Long) v2	culsiB155
Lsi09G004370	Cucumber (Chinese Long) v2	culsiB322
Lsi09G004370	Melon (DHL92) v3.5.1	lsimeB012
Lsi09G004370	Watermelon (Charleston Gray)	lsiwcgB008
Lsi09G004370	Watermelon (97103) v1	lsiwmB008
Lsi09G004370	Cucumber (Gy14) v2	cgyblsiB294
Lsi09G004370	Melon (DHL92) v3.6.1	lsimedB012
Lsi09G004370	Silver-seed gourd	carlsiB493
Lsi09G004370	Silver-seed gourd	carlsiB834
Lsi09G004370	Cucumber (Chinese Long) v3	cuclsiB172
Lsi09G004370	Cucumber (Chinese Long) v3	cuclsiB345
Lsi09G004370	Watermelon (97103) v2	lsiwmbB007