Lsi09G003540 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi09G003540
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Early nodulin 55-2-like protein
Location	chr09 : 3691472 .. 3692544 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTTCTCCACCTCTCATCTCTTCGTCTTCCTCTCTCTTGCCGCGGTCATTTTTGCCCCTTCGGCTCTGGCCACCAATTACACCGTCGGAGATGATTCTGGTTGGAACATCGATGTTAACTATACATTGTGGGCTCAGGATAAAACATTCTACGTCAACGATGTTCTTAGTGAGTCATTCTATTCAACTCTATTAAGTTATTCATGTTTTTTTAAAAAAGAATGTGATTAAAAAGATTATATATACAAACAATAATTTCCAATAATTATAACCTCATTTTTAAATAAAGTTTGCAATAGTCTAACATGATATCAAAATAAAATGTCATATACCTAATAGATCATACAATAGTGATCTATAGATGGGCCTTAAGAATCGCATATGTACCCGCATTAACTTTTTGACATGCATACGATTTATTGAACATATATATTTGTACTTTTTTTCTAATATTTGGGGGCGTGTCGTCGGTTACGTTGTAGTCATTTTTTTAGCCACTTCACAACACAACGGAAAAACTAAAAAATATATATATTATAAAGGAGTAATACATAGGTGCAACTCATATTATATGTTGTGCAGTTCAAAATGCACCAAAGTATTTTTCATTATAGAAAAAAAGAAAAACGAAAAGTTTTTCACGTGTAAAAATAGAGTTAACAATAGGAAGCACCTAAGTATTGTCGTGGATTTTTCACGAATAAAATGGGTTTTTTTGTTTTTGTTTAGTTTTCAAGTACCCAGCAGGAGACCACAATGTGTACAAGGTCAATGGCAGTGATTTCCACAATTGCACAGTACCAGCTGGCCAGACTCCATTGACGACTGGAAACGATGTCATTGTATTGGCAAAGTCTGGAAGAAAATGGTACATCTGTGGAAAAGAAGGCCACTGTGGGAAAAGCCAGAAGCTGGTAATTACGGTCATGGATATGGCTCCAGCCGCCAATTCACCACTTCCCGGTGCAACCCCGCCACCGCCACCATCTGCAGCCACCAAACCGGTTGTTTCCGCCCAATTTGGGCTCGTCGCATTGGTGCTTGCCGTCCTTGGGATGATGATGGCTTAG

mRNA sequence

ATGGCCTTCTCCACCTCTCATCTCTTCGTCTTCCTCTCTCTTGCCGCGGTCATTTTTGCCCCTTCGGCTCTGGCCACCAATTACACCGTCGGAGATGATTCTGGTTGGAACATCGATGTTAACTATACATTGTGGGCTCAGGATAAAACATTCTACGTCAACGATGTTCTTATTTTCAAGTACCCAGCAGGAGACCACAATGTGTACAAGGTCAATGGCAGTGATTTCCACAATTGCACAGTACCAGCTGGCCAGACTCCATTGACGACTGGAAACGATGTCATTGTATTGGCAAAGTCTGGAAGAAAATGGTACATCTGTGGAAAAGAAGGCCACTGTGGGAAAAGCCAGAAGCTGGTAATTACGGTCATGGATATGGCTCCAGCCGCCAATTCACCACTTCCCGGTGCAACCCCGCCACCGCCACCATCTGCAGCCACCAAACCGGTTGTTTCCGCCCAATTTGGGCTCGTCGCATTGGTGCTTGCCGTCCTTGGGATGATGATGGCTTAG

Coding sequence (CDS)

ATGGCCTTCTCCACCTCTCATCTCTTCGTCTTCCTCTCTCTTGCCGCGGTCATTTTTGCCCCTTCGGCTCTGGCCACCAATTACACCGTCGGAGATGATTCTGGTTGGAACATCGATGTTAACTATACATTGTGGGCTCAGGATAAAACATTCTACGTCAACGATGTTCTTATTTTCAAGTACCCAGCAGGAGACCACAATGTGTACAAGGTCAATGGCAGTGATTTCCACAATTGCACAGTACCAGCTGGCCAGACTCCATTGACGACTGGAAACGATGTCATTGTATTGGCAAAGTCTGGAAGAAAATGGTACATCTGTGGAAAAGAAGGCCACTGTGGGAAAAGCCAGAAGCTGGTAATTACGGTCATGGATATGGCTCCAGCCGCCAATTCACCACTTCCCGGTGCAACCCCGCCACCGCCACCATCTGCAGCCACCAAACCGGTTGTTTCCGCCCAATTTGGGCTCGTCGCATTGGTGCTTGCCGTCCTTGGGATGATGATGGCTTAG

Protein sequence

MAFSTSHLFVFLSLAAVIFAPSALATNYTVGDDSGWNIDVNYTLWAQDKTFYVNDVLIFKYPAGDHNVYKVNGSDFHNCTVPAGQTPLTTGNDVIVLAKSGRKWYICGKEGHCGKSQKLVITVMDMAPAANSPLPGATPPPPPSAATKPVVSAQFGLVALVLAVLGMMMA

Homology

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BLAST of Lsi09G003540 vs. Swiss-Prot
Match: BCP_PEA (Blue copper protein OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 9.8e-22
Identity = 63/139 (45.32%), Postives = 81/139 (58.27%), Query Frame = 1


Query: 1   MAFSTSHLFVFLSLAAVIFAPSALATNYTVGDDSGWNIDVNYTLWAQDKTFYVNDVLIFK 60
           MAFS + +  FL LA +  A  +LAT YTVGD SGW I  +Y+ WA DKTF V D L+F 
Sbjct: 1   MAFSNALVLCFL-LAIINMALPSLATVYTVGDTSGWVIGGDYSTWASDKTFAVGDSLVFN 60

Query: 61  YPAGDHNVYKVNGSDFHNCTVPAGQTPLTTGNDVIVLAKSGRKWYICGKEGHCGKSQKLV 120
           Y AG H V +V  SD+ +CT     +  +TG   I L K+G+ ++ICG  GH     KL 
Sbjct: 61  YGAGAHTVDEVKESDYKSCTSGNSISTDSTGATTIPLKKAGKHYFICGVPGHSTGGMKLS 120

Query: 121 ITVMDMAPAANSPLPGATP 140
           I V   A + +S  P ATP
Sbjct: 121 IKV--KASSGSSAAPSATP 136

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BLAST of Lsi09G003540 vs. Swiss-Prot
Match: STEL_TOXVR (Stellacyanin OS=Toxicodendron vernicifluum PE=1 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 9.4e-17
Identity = 44/103 (42.72%), Postives = 59/103 (57.28%), Query Frame = 1


Query: 26  TNYTVGDDSGWNI----DVNYTL-WAQDKTFYVNDVLIFKYPAGDHNVYKVNGSDFHNCT 85
           T YTVGD +GW +    DV+Y   WA +KTF++ DVL+FKY    HNV KV   ++ +C 
Sbjct: 1   TVYTVGDSAGWKVPFFGDVDYDWKWASNKTFHIGDVLVFKYDRRFHNVDKVTQKNYQSCN 60

Query: 86  VPAGQTPLTTGNDVIVLAKSGRKWYICGKEGHCGKSQKLVITV 124
                    TG++ I L   G+K+YICG   HC   QK+ I V
Sbjct: 61  DTTPIASYNTGBBRINLKTVGQKYYICGVPKHCDLGQKVHINV 103

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BLAST of Lsi09G003540 vs. Swiss-Prot
Match: BABL_ARATH (Basic blue protein OS=Arabidopsis thaliana GN=ARPN PE=2 SV=2)

HSP 1 Score: 82.0 bits (201), Expect = 6.8e-15
Identity = 39/100 (39.00%), Postives = 52/100 (52.00%), Query Frame = 1


Query: 25  ATNYTVGDDSGWNIDVNYTLWAQDKTFYVNDVLIFKYPAGDHNVYKVNGSDFHNCTVPAG 84
           A  YTVGD   W    N   W + K F   DVL+F Y    HNV KV+   ++NC  P G
Sbjct: 33  AATYTVGDSGIWTF--NAVGWPKGKHFRAGDVLVFNYNPRMHNVVKVDSGSYNNCKTPTG 92

Query: 85  QTPLTTGNDVIVLAKSGRKWYICGKEGHCGKSQKLVITVM 125
             P T+G D I L+K G+ ++IC    HC    K+ +T +
Sbjct: 93  AKPYTSGKDRITLSK-GQNFFICNFPNHCESDMKIAVTAV 129

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BLAST of Lsi09G003540 vs. Swiss-Prot
Match: BCB3_ARATH (Uclacyanin-3 OS=Arabidopsis thaliana GN=UCC3 PE=2 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 2.6e-14
Identity = 50/146 (34.25%), Postives = 72/146 (49.32%), Query Frame = 1


Query: 4   STSHLFVFLSLAAVIFAPSALATNYTVGDDSGWNIDVNYTLWAQDKTFYVNDVLIFKYPA 63
           ST    + L LAAV   P+  A  + VGD SGW  +++YT+W   KTF V D L F Y  
Sbjct: 3   STVAAALLLFLAAV---PAVFAATFKVGDISGWTSNLDYTVWLTGKTFRVGDTLEFVYGL 62

Query: 64  GDHNVYKVNGSDFHNCTVPAGQTPLTTGNDVIVLAKSGRKWYICGKEGHCGKSQKLVITV 123
             H+V  V+ + + NC           G+  I L   G   ++C   GHC    KL + V
Sbjct: 63  -SHSVSVVDKAGYDNCDSSGATQNFADGDTKIDLTTVGTMHFLCPTFGHCKNGMKLAVPV 122

Query: 124 MDMAPAANSPLPGATPPPPPSAATKP 150
           +  AP+ ++P   ++PP  PS  + P
Sbjct: 123 LAAAPSPSTP---SSPPSTPSTPSSP 141

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BLAST of Lsi09G003540 vs. Swiss-Prot
Match: LAML_ARATH (Lamin-like protein OS=Arabidopsis thaliana GN=At5g15350 PE=1 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 4.4e-14
Identity = 52/164 (31.71%), Postives = 79/164 (48.17%), Query Frame = 1


Query: 5   TSHLFVFLSLAAVIFAPSALATNYTVGDDSGWNIDVNYTLWAQDKTFYVNDVLIFKYPAG 64
           T+ +  FL  A +   P   A  YTVG++  WN ++NYT+WAQ K FY+ D L F +   
Sbjct: 9   TAVVLAFLMAAPM---PGVTAKKYTVGENKFWNPNINYTIWAQGKHFYLGDWLYFVFDRN 68

Query: 65  DHNVYKVNGSDFHNCTV--PAGQTPLTTGNDVIVLAKSGRKWYICGKEGHCGKSQKLVIT 124
            HN+ +VN +D+  C    P        G D++ L ++ + +Y+   +G C    KL + 
Sbjct: 69  QHNILEVNKTDYEGCIADHPIRNWTRGAGRDIVTLNQT-KHYYLLDGKGGCYGGMKLSVK 128

Query: 125 VMDMAPAANSPLPGATPPPPPSAATKPV--VSAQFGLVALVLAV 165
           V  +            PPPP SA  K +  VS   GL   ++ V
Sbjct: 129 VEKL------------PPPPKSAPVKNIGSVSMVTGLAQFMIPV 156

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BLAST of Lsi09G003540 vs. TrEMBL
Match: A0A0A0KKF3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G157340 PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 6.7e-62
Identity = 122/157 (77.71%), Postives = 136/157 (86.62%), Query Frame = 1


Query: 14  LAAVIFAPSALATNYTVGDDSGWNIDVNYTLWAQDKTFYVNDVLIFKYPAGDHNVYKVNG 73
           +A V++APSALATNYTVGDD+GW+I+VNYTLWAQ K F V D+LIF YP GDHNV+KVNG
Sbjct: 1   MAVVMYAPSALATNYTVGDDAGWSINVNYTLWAQGKMFNVGDMLIFNYPPGDHNVFKVNG 60

Query: 74  SDFHNCTVPA-GQTPLTTGNDVIVLAKSGRKWYICGKEGHCGKSQKLVITVMDMAPAANS 133
           SDF NCT+P  GQ  LT+G+DVIVLAK G+KWYICGKEGHCG+ QKLVI VMDM P ANS
Sbjct: 61  SDFQNCTLPKDGQNALTSGSDVIVLAKPGKKWYICGKEGHCGQGQKLVINVMDMGP-ANS 120

Query: 134 PLPGATPPPPPSAATKPVVSAQFGLVALVLAVLGMMM 170
           PLPG T PPPPSAATK VVSAQFG VALV+AVLGMMM
Sbjct: 121 PLPGGTAPPPPSAATKAVVSAQFGFVALVVAVLGMMM 156

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BLAST of Lsi09G003540 vs. TrEMBL
Match: A0A151QQK7_CAJCA (Blue copper protein OS=Cajanus cajan GN=KK1_046692 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 5.9e-34
Identity = 74/135 (54.81%), Postives = 87/135 (64.44%), Query Frame = 1


Query: 10  VFLSLAAVIFAPS-ALATNYTVGDDSGWNIDVNYTLWAQDKTFYVNDVLIFKYPAGDHNV 69
           + L   A IF PS A+A  + VGD  GW +D NY+ WA DKTF V D LIF+Y  G+HNV
Sbjct: 7   IMLVAIATIFLPSIAMAKEFVVGDSHGWTLDFNYSAWAADKTFQVGDTLIFRYAVGEHNV 66

Query: 70  YKVNGSDFHNCTVPAGQTPLTTGNDVIVLAKSGRKWYICGKEGHCGKSQKLVITVMDMAP 129
           +KVNG+ F +CTVP     L+TG+D IVLA  GRKWYICG EGHC   QKLVITV     
Sbjct: 67  FKVNGTLFQSCTVPPASEALSTGSDHIVLATPGRKWYICGVEGHCNAGQKLVITVQQPQT 126

Query: 130 AANSPLPGATPPPPP 144
              +P P A P P P
Sbjct: 127 LPPTPSPAAVPAPSP 141

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BLAST of Lsi09G003540 vs. TrEMBL
Match: M5WYC6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019588mg PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.9e-33
Identity = 88/175 (50.29%), Postives = 113/175 (64.57%), Query Frame = 1


Query: 4   STSHLFVFLSLAAVIFAPSALATNYTVGDDSGWNIDVNYTLWAQDKTFYVNDVLIFKYPA 63
           ++S+L++ L+  AV FAPS LAT+Y VGDD GW I+ +Y  WAQ K+FYV D L+F YP 
Sbjct: 2   ASSNLYIILATLAV-FAPSVLATDYVVGDDKGWTINFDYQAWAQGKSFYVGDNLVFNYPE 61

Query: 64  GDHNVYKVNGSDFHNCTVPAGQTPLTTGNDVIVLAKSGRKWYICGKEGHCG-KSQKLVIT 123
           G H V KVNG+ F  C  P    PLT+G DVI LA  GRKWYICG   HC   +QKL+IT
Sbjct: 62  GAHTVLKVNGTGFQQCAAPLDSAPLTSGKDVINLATPGRKWYICGVGQHCELGNQKLLIT 121

Query: 124 VM----DMAPA-ANSPLPGATPPPPPSA-ATKPVVSAQFGLVALV-LAVLGMMMA 171
           V+      AP+ ++S  P AT  P PSA A   +V  +F L+ L+ +  LGM+MA
Sbjct: 122 VLPSSSSSAPSPSHSSWPSATAGPGPSASAATTIVGTRFALMMLLTIGFLGMLMA 175

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BLAST of Lsi09G003540 vs. TrEMBL
Match: B9I839_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s03110g PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 8.6e-33
Identity = 78/168 (46.43%), Postives = 103/168 (61.31%), Query Frame = 1


Query: 4   STSHLFVFLSLAAVIFAPSALATNYTVGDDSGWNIDVNYTLWAQDKTFYVNDVLIFKYPA 63
           ++  +F+ +++ AV F PS LAT + VGD +GW +  NY  WAQ K FYV D L+FKY  
Sbjct: 2   ASCRIFMIIAIVAV-FVPSILATEHMVGDKTGWTLGFNYQTWAQGKAFYVGDTLVFKYTP 61

Query: 64  GDHNVYKVNGSDFHNCTVPAGQTPLTTGNDVIVLAKSGRKWYICGKEGHC-GKSQKLVIT 123
           G HNV  VNG+ F  C       PLTTGNDVI L+  G+KWYIC   GHC   +QKL IT
Sbjct: 62  GAHNVLSVNGTGFEECKAADDIVPLTTGNDVITLSTPGKKWYICSVPGHCESGNQKLFIT 121

Query: 124 VM-DMAPAANSPLPGATPPPPPSAATKPVVSAQFGLVALVLAVLGMMM 170
           V+  ++  A SP PG T   P  AA   + S  +GL+A ++ + GM+M
Sbjct: 122 VLPQLSSPATSPFPGPTDTSPSGAAGN-IASTYYGLIAAIVGIFGMIM 167

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BLAST of Lsi09G003540 vs. TrEMBL
Match: A5BEW9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012897 PE=4 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 1.1e-32
Identity = 80/159 (50.31%), Postives = 103/159 (64.78%), Query Frame = 1


Query: 12  LSLAAVIFAPSALATNYTVGDDSGWNIDVNYTLWAQDKTFYVNDVLIFKYPAGDHNVYKV 71
           L++ A++    A+AT +TVGDD GW I+ +Y  WA+DK F+V D L+FKY AG HNV+KV
Sbjct: 9   LAIFAIVLPXVAMATEFTVGDDQGWTINFDYEAWAKDKVFHVGDKLVFKYTAGRHNVFKV 68

Query: 72  NGSDFHNCTVPAGQTPLTTGNDVIVLAKSGRKWYICGKEGHCGK-SQKLVITVMD--MAP 131
           NG+ F NCT+P     LTTGNDVI LA  GRKWYICG   HC    QKL ITV++  ++P
Sbjct: 69  NGTAFTNCTIPPANEALTTGNDVITLATPGRKWYICGVNDHCANYGQKLAITVLEAWVSP 128

Query: 132 AANSPLPGAT---PPPPPSAATKPVVSAQFGLVALVLAV 165
           A+    P AT     P PS+A    VS    L+A ++AV
Sbjct: 129 ASAPSTPAATSTPAAPAPSSAYGISVSGYQLLMAAMVAV 167

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BLAST of Lsi09G003540 vs. TAIR10
Match: AT3G17675.1 (AT3G17675.1 Cupredoxin superfamily protein)

HSP 1 Score: 101.7 bits (252), Expect = 4.7e-22
Identity = 43/98 (43.88%), Postives = 61/98 (62.24%), Query Frame = 1


Query: 26  TNYTVGDDSGWNIDVNYTLWAQDKTFYVNDVLIFKYPAGDHNVYKVNGSDFHNCTVPAGQ 85
           T + VGD +GW +  NYT W Q + F+V DVL+F Y +  HNV +VN + + +C +    
Sbjct: 7   TEHIVGDSNGWELFTNYTNWTQGREFHVGDVLVFNYKSDQHNVMQVNSTAYTDCGLDNYT 66

Query: 86  TPLTTGNDVIVLAKSGRKWYICGKEGHCGKSQKLVITV 124
           T  T GND I+L++ G+ W+ICG + HC   QKL I V
Sbjct: 67  TLFTKGNDSIILSEVGKLWFICGVDDHCVNGQKLSINV 104

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BLAST of Lsi09G003540 vs. TAIR10
Match: AT5G26330.1 (AT5G26330.1 Cupredoxin superfamily protein)

HSP 1 Score: 89.7 bits (221), Expect = 1.8e-18
Identity = 48/127 (37.80%), Postives = 71/127 (55.91%), Query Frame = 1


Query: 25  ATNYTVGDDSGWNI--DVNYTLWAQDKTFYVNDVLIFKYPAGDHNVYKVNGSDFHNCTVP 84
           A  Y VGD +GW    +V+Y LWA  KTF++ D ++F+Y    HNV +V    + +C   
Sbjct: 21  AAVYKVGDSAGWTTIANVDYKLWASTKTFHIGDTVLFEYNPQFHNVMRVTHPMYRSCNTS 80

Query: 85  AGQTPLTTGNDVIVLAKSGRKWYICGKEGHCGKSQKLVITVMDMAPAANSPLPGATPPPP 144
              +  TTGND I L   G  ++ CG  GHC   QKL + V  + PA+++PL   + PP 
Sbjct: 81  KPISTFTTGNDSITLTNHGHHFFFCGVPGHCLAGQKLDLHV--LLPASSTPL---SDPPT 140

Query: 145 PSAATKP 150
            S+++ P
Sbjct: 141 SSSSSPP 142

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BLAST of Lsi09G003540 vs. TAIR10
Match: AT3G60270.1 (AT3G60270.1 Cupredoxin superfamily protein)

HSP 1 Score: 87.0 bits (214), Expect = 1.2e-17
Identity = 50/145 (34.48%), Postives = 69/145 (47.59%), Query Frame = 1


Query: 12  LSLAAVIFAPSALATNYTVGDDSGWNIDVNYTLWAQDKTFYVNDVLIFKYPAGDHNVYKV 71
           L L  ++  P+  A  + VGD+ GW I V YT W  +KTF V D L FKY    H+V  V
Sbjct: 10  LLLLLLVAVPAVFAVTFQVGDNDGWTIGVEYTSWVSEKTFRVGDTLEFKY-GPSHSVAVV 69

Query: 72  NGSDFHNCTVPAGQTPLTTGNDVIVLAKSGRKWYICGKEGHCGKSQKLVITVM------- 131
           N +D+  C         + G+  I L K G   ++C   GHC    KL + V+       
Sbjct: 70  NKADYDGCETSRPTQSFSDGDTKIDLTKVGAIHFLCLTPGHCSLGMKLAVQVLAAVSLEP 129

Query: 132 DMAPAANSPLPGATPPPPPSAATKP 150
             +P+A SP P A  P P + +  P
Sbjct: 130 PPSPSAPSPSPSAPSPSPSAPSPSP 153

[Close]

BLAST of Lsi09G003540 vs. TAIR10
Match: AT5G53870.1 (AT5G53870.1 early nodulin-like protein 1)

HSP 1 Score: 85.1 bits (209), Expect = 4.5e-17
Identity = 54/151 (35.76%), Postives = 75/151 (49.67%), Query Frame = 1


Query: 2   AFSTSHLFVFLSLAA-VIFAPSALATNYTVGDDSGW--NIDVNYTLWAQDKTFYVNDVLI 61
           A   S  F FL LA+   F   A A  + VG +  W  N   NY  WA+   F VND L 
Sbjct: 3   AIMKSLCFSFLILASFATFFSVADAWRFNVGGNGAWVTNPQENYNTWAERNRFQVNDSLY 62

Query: 62  FKYPAGDHNVYKVNGSDFHNCTVPAGQTPLTTGNDVIVLAKSGRKWYICGKEGHCGKSQK 121
           FKY  G  +V +V  +DF  C V         G  V+ L +SG  ++I G + HC K QK
Sbjct: 63  FKYAKGSDSVQQVMKADFDGCNVRNPIKNFENGESVVTLDRSGAFYFISGNQDHCQKGQK 122

Query: 122 LVITVMDM----APAANSPLPGATPPPPPSA 146
           L++ V+ +    +  A+SP+P  +P  PP +
Sbjct: 123 LIVVVLAVRNQPSAPAHSPVPSVSPTQPPKS 153

[Close]

BLAST of Lsi09G003540 vs. TAIR10
Match: AT3G01070.1 (AT3G01070.1 early nodulin-like protein 16)

HSP 1 Score: 82.0 bits (201), Expect = 3.8e-16
Identity = 47/135 (34.81%), Postives = 69/135 (51.11%), Query Frame = 1


Query: 14  LAAVIFAPSALATNYTVGDDSGWNIDVNYTLWAQDKTFYVNDVLIFKYPAGDHNVYKVNG 73
           LA ++ A +  A  +TVGD+  WN ++NYT+WAQDK FY++D L F Y    +NV +VN 
Sbjct: 13  LAFLLAATNVTAKRWTVGDNKFWNPNINYTIWAQDKHFYLDDWLYFVYERNQYNVIEVNE 72

Query: 74  SDFHNCTV--PAGQTPLTTGNDVIVLAKSGRKWYICGKEGHCGKSQKLVITVMDMAPAAN 133
           +++ +C    P        G D++ L  +   + I G  G C    KL + V        
Sbjct: 73  TNYISCNPNNPIANWSRGAGRDLVHLNVTRHYYLISGNGGGCYGGMKLAVLV-------- 132

Query: 134 SPLPGATPPPPPSAA 147
                  PPPPP+AA
Sbjct: 133 -----EKPPPPPAAA 134

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BLAST of Lsi09G003540 vs. NCBI nr
Match: gi|449459738|ref|XP_004147603.1| (PREDICTED: mavicyanin-like [Cucumis sativus])

HSP 1 Score: 263.1 bits (671), Expect = 3.4e-67
Identity = 133/170 (78.24%), Postives = 147/170 (86.47%), Query Frame = 1


Query: 1   MAFSTSHLFVFLSLAAVIFAPSALATNYTVGDDSGWNIDVNYTLWAQDKTFYVNDVLIFK 60
           MA STSHLFV LS+A V++APSALATNYTVGDD+GW+I+VNYTLWAQ K F V D+LIF 
Sbjct: 1   MAISTSHLFVLLSMAVVMYAPSALATNYTVGDDAGWSINVNYTLWAQGKMFNVGDMLIFN 60

Query: 61  YPAGDHNVYKVNGSDFHNCTVPA-GQTPLTTGNDVIVLAKSGRKWYICGKEGHCGKSQKL 120
           YP GDHNV+KVNGSDF NCT+P  GQ  LT+G+DVIVLAK G+KWYICGKEGHCG+ QKL
Sbjct: 61  YPPGDHNVFKVNGSDFQNCTLPKDGQNALTSGSDVIVLAKPGKKWYICGKEGHCGQGQKL 120

Query: 121 VITVMDMAPAANSPLPGATPPPPPSAATKPVVSAQFGLVALVLAVLGMMM 170
           VI VMDM P ANSPLPG T PPPPSAATK VVSAQFG VALV+AVLGMMM
Sbjct: 121 VINVMDMGP-ANSPLPGGTAPPPPSAATKAVVSAQFGFVALVVAVLGMMM 169

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BLAST of Lsi09G003540 vs. NCBI nr
Match: gi|659073636|ref|XP_008437169.1| (PREDICTED: basic blue protein-like [Cucumis melo])

HSP 1 Score: 261.9 bits (668), Expect = 7.6e-67
Identity = 132/169 (78.11%), Postives = 143/169 (84.62%), Query Frame = 1


Query: 1   MAFSTSHLFVFLSLAAVIFAPSALATNYTVGDDSGWNIDVNYTLWAQDKTFYVNDVLIFK 60
           MA STSHLFV LS A V+ APSALATNYTVGDD+GW+I+VNYT+WAQ K F V D+LIF 
Sbjct: 1   MAISTSHLFVLLSFAVVMSAPSALATNYTVGDDAGWSINVNYTVWAQGKMFNVGDMLIFN 60

Query: 61  YPAGDHNVYKVNGSDFHNCTVPAGQTPLTTGNDVIVLAKSGRKWYICGKEGHCGKSQKLV 120
           YP GDHNV+KVNGSDF +CTVP  Q  L TG+DVIVLAK GRKWYICGKEGHCG+ QKLV
Sbjct: 61  YPPGDHNVFKVNGSDFKSCTVPKDQNALATGSDVIVLAKPGRKWYICGKEGHCGQGQKLV 120

Query: 121 ITVMDMAPAANSPLPGATPPPPPSAATKPVVSAQFGLVALVLAVLGMMM 170
           I VMDM P ANSPLPG TPPPPPSAATK VVS QFG VALV+AVLGMMM
Sbjct: 121 IDVMDMGP-ANSPLPGGTPPPPPSAATKAVVSGQFGFVALVVAVLGMMM 168

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BLAST of Lsi09G003540 vs. NCBI nr
Match: gi|700194998|gb|KGN50175.1| (hypothetical protein Csa_5G157340 [Cucumis sativus])

HSP 1 Score: 245.0 bits (624), Expect = 9.6e-62
Identity = 122/157 (77.71%), Postives = 136/157 (86.62%), Query Frame = 1


Query: 14  LAAVIFAPSALATNYTVGDDSGWNIDVNYTLWAQDKTFYVNDVLIFKYPAGDHNVYKVNG 73
           +A V++APSALATNYTVGDD+GW+I+VNYTLWAQ K F V D+LIF YP GDHNV+KVNG
Sbjct: 1   MAVVMYAPSALATNYTVGDDAGWSINVNYTLWAQGKMFNVGDMLIFNYPPGDHNVFKVNG 60

Query: 74  SDFHNCTVPA-GQTPLTTGNDVIVLAKSGRKWYICGKEGHCGKSQKLVITVMDMAPAANS 133
           SDF NCT+P  GQ  LT+G+DVIVLAK G+KWYICGKEGHCG+ QKLVI VMDM P ANS
Sbjct: 61  SDFQNCTLPKDGQNALTSGSDVIVLAKPGKKWYICGKEGHCGQGQKLVINVMDMGP-ANS 120

Query: 134 PLPGATPPPPPSAATKPVVSAQFGLVALVLAVLGMMM 170
           PLPG T PPPPSAATK VVSAQFG VALV+AVLGMMM
Sbjct: 121 PLPGGTAPPPPSAATKAVVSAQFGFVALVVAVLGMMM 156

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BLAST of Lsi09G003540 vs. NCBI nr
Match: gi|764580140|ref|XP_011463792.1| (PREDICTED: stellacyanin-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 164.5 bits (415), Expect = 1.7e-37
Identity = 80/148 (54.05%), Postives = 97/148 (65.54%), Query Frame = 1


Query: 1   MAFSTSHLFVFLSLAAVIFAPSALATNYTVGDDSGWNIDVNYTLWAQDKTFYVNDVLIFK 60
           +A +++  FV L++   IFAPS LAT+Y VGD  GW I+ +Y  WAQ K FYV D+L+F 
Sbjct: 46  LAMASTQHFVILAIILAIFAPSILATDYIVGDGKGWTINFDYQAWAQGKMFYVGDILVFN 105

Query: 61  YPAGDHNVYKVNGSDFHNCTVPAGQTPLTTGNDVIVLAKSGRKWYICGKEGHCGKSQKLV 120
           YP G HNVYKVNG+ F  C VPAG  PLT+GNDVI LA  GRKWYICG   HC   QKL 
Sbjct: 106 YPQGVHNVYKVNGTGFQECAVPAGVMPLTSGNDVINLATPGRKWYICGVARHCSVGQKLF 165

Query: 121 ITVMDMAPAANSPLPGATPPPPPSAATK 149
           ITVM     + SPL  ++  P PS   +
Sbjct: 166 ITVMPSMAPSPSPLSASSAVPSPSPTAR 193

[Close]

BLAST of Lsi09G003540 vs. NCBI nr
Match: gi|657964507|ref|XP_008373881.1| (PREDICTED: stellacyanin-like [Malus domestica])

HSP 1 Score: 155.2 bits (391), Expect = 1.0e-34
Identity = 82/170 (48.24%), Postives = 110/170 (64.71%), Query Frame = 1


Query: 4   STSHLFVFLSLAAVIFAPSALATNYTVGDDSGWNIDVNYTLWAQDKTFYVNDVLIFKYPA 63
           ++SHLF+ L   A++ APS LAT++ VGDD GW I+ +Y  WAQ K FYV D L+FKYP 
Sbjct: 2   ASSHLFIILVTLAIV-APSILATDFVVGDDKGWTINFDYQTWAQGKQFYVGDKLVFKYPK 61

Query: 64  GDHNVYKVNGSDFHNCTVPAGQTPLTTGNDVIVLAKSGRKWYICGKEGHCGK-SQKLVIT 123
           G HNVYKVNG++F  C  P    PLT+GNDV+ LA +GRKWYICG   HC   +QKL+IT
Sbjct: 62  GVHNVYKVNGTEFQQCAAPLDSVPLTSGNDVVTLATAGRKWYICGVGQHCKTGNQKLLIT 121

Query: 124 VMDMAPAANSPLPGATPPPPPSAATKPVVSAQ--FGLVALVLAVLGMMMA 171
           VM  +  + SP   A+ P      T   +S +  +G + ++L +L M+ A
Sbjct: 122 VMPSSAPSPSPSYTASSPSTSIPYTSAAISVETRYGWMMVILGLLVMLTA 170

The following BLAST results are available for this feature:

BLAST of Lsi09G003540 vs. Swiss-Prot


Match Name	E-value	Identity	Description
BCP_PEA	9.8e-22	45.32	Blue copper protein OS=Pisum sativum PE=2 SV=1	[more]
STEL_TOXVR	9.4e-17	42.72	Stellacyanin OS=Toxicodendron vernicifluum PE=1 SV=1	[more]
BABL_ARATH	6.8e-15	39.00	Basic blue protein OS=Arabidopsis thaliana GN=ARPN PE=2 SV=2	[more]
BCB3_ARATH	2.6e-14	34.25	Uclacyanin-3 OS=Arabidopsis thaliana GN=UCC3 PE=2 SV=1	[more]
LAML_ARATH	4.4e-14	31.71	Lamin-like protein OS=Arabidopsis thaliana GN=At5g15350 PE=1 SV=1	[more]

BLAST of Lsi09G003540 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KKF3_CUCSA	6.7e-62	77.71	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G157340 PE=4 SV=1	[more]
A0A151QQK7_CAJCA	5.9e-34	54.81	Blue copper protein OS=Cajanus cajan GN=KK1_046692 PE=4 SV=1	[more]
M5WYC6_PRUPE	2.9e-33	50.29	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019588mg PE=4 SV=1	[more]
B9I839_POPTR	8.6e-33	46.43	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s03110g PE=4 SV=1	[more]
A5BEW9_VITVI	1.1e-32	50.31	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012897 PE=4 SV=1	[more]

BLAST of Lsi09G003540 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G17675.1	4.7e-22	43.88	Cupredoxin superfamily protein	[more]
AT5G26330.1	1.8e-18	37.80	Cupredoxin superfamily protein	[more]
AT3G60270.1	1.2e-17	34.48	Cupredoxin superfamily protein	[more]
AT5G53870.1	4.5e-17	35.76	early nodulin-like protein 1	[more]
AT3G01070.1	3.8e-16	34.81	early nodulin-like protein 16	[more]

BLAST of Lsi09G003540 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449459738\|ref\|XP_004147603.1\|	3.4e-67	78.24	PREDICTED: mavicyanin-like [Cucumis sativus]	[more]
gi\|659073636\|ref\|XP_008437169.1\|	7.6e-67	78.11	PREDICTED: basic blue protein-like [Cucumis melo]	[more]
gi\|700194998\|gb\|KGN50175.1\|	9.6e-62	77.71	hypothetical protein Csa_5G157340 [Cucumis sativus]	[more]
gi\|764580140\|ref\|XP_011463792.1\|	1.7e-37	54.05	PREDICTED: stellacyanin-like [Fragaria vesca subsp. vesca]	[more]
gi\|657964507\|ref\|XP_008373881.1\|	1.0e-34	48.24	PREDICTED: stellacyanin-like [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0009055	electron carrier activity

Vocabulary: **INTERPRO**
Term	Definition
IPR008972	Cupredoxin
IPR003245	Phytocyanin_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0022900	electron transport chain
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0009055	electron carrier activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G003540.1	Lsi09G003540.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003245	Phytocyanin domain	PRODOM	PD003122		coord: 58..124 score: 1.0
IPR003245	Phytocyanin domain	PFAM	PF02298	Cu_bind_like	coord: 37..115 score: 1.2
IPR003245	Phytocyanin domain	PROFILE	PS51485	PHYTOCYANIN	coord: 26..125 score: 37
IPR008972	Cupredoxin	GENE3D	G3DSA:2.60.40.420		coord: 25..125 score: 1.8
IPR008972	Cupredoxin	unknown	SSF49503	Cupredoxins	coord: 25..124 score: 1.16
None	No IPR available	PANTHER	PTHR33021	FAMILY NOT NAMED	coord: 1..142 score: 3.4
None	No IPR available	PANTHER	PTHR33021:SF2	SUBFAMILY NOT NAMED	coord: 1..142 score: 3.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi09G003540	Csa5G157340	Cucumber (Chinese Long) v2	culsiB322
Lsi09G003540	CSPI05G06140	Wild cucumber (PI 183967)	cpilsiB322
Lsi09G003540	Cucsa.302450	Cucumber (Gy14) v1	cgylsiB487
Lsi09G003540	CmaCh15G011800	Cucurbita maxima (Rimu)	cmalsiB267
Lsi09G003540	CmaCh02G015180	Cucurbita maxima (Rimu)	cmalsiB538
Lsi09G003540	CmoCh15G012410	Cucurbita moschata (Rifu)	cmolsiB255
Lsi09G003540	CmoCh02G015610	Cucurbita moschata (Rifu)	cmolsiB523
Lsi09G003540	Cla011518	Watermelon (97103) v1	lsiwmB027
Lsi09G003540	MELO3C005598	Melon (DHL92) v3.5.1	lsimeB012
Lsi09G003540	ClCG01G003450	Watermelon (Charleston Gray)	lsiwcgB008
Lsi09G003540	Cla97C01G003520	Watermelon (97103) v2	lsiwmbB007
Lsi09G003540	Bhi12G000326	Wax gourd	lsiwgoB010
Lsi09G003540	Cp4.1LG05g02740	Cucurbita pepo (Zucchini)	cpelsiB581
Lsi09G003540	Cp4.1LG13g02040	Cucurbita pepo (Zucchini)	cpelsiB131
Lsi09G003540	CsGy5G003470	Cucumber (Gy14) v2	cgyblsiB294
Lsi09G003540	Carg02468	Silver-seed gourd	carlsiB833
Lsi09G003540	Carg16674	Silver-seed gourd	carlsiB851
Lsi09G003540	CsaV3_5G003540	Cucumber (Chinese Long) v3	cuclsiB345

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi09G003540	Bottle gourd (USVL1VR-Ls)	lsilsiB008
Lsi09G003540	Bottle gourd (USVL1VR-Ls)	lsilsiB019
Lsi09G003540	Cucumber (Gy14) v1	cgylsiB411
Lsi09G003540	Cucumber (Gy14) v1	cgylsiB526
Lsi09G003540	Cucurbita maxima (Rimu)	cmalsiB365
Lsi09G003540	Cucurbita maxima (Rimu)	cmalsiB530
Lsi09G003540	Cucurbita maxima (Rimu)	cmalsiB742
Lsi09G003540	Cucurbita moschata (Rifu)	cmolsiB353
Lsi09G003540	Cucurbita moschata (Rifu)	cmolsiB516
Lsi09G003540	Cucurbita moschata (Rifu)	cmolsiB734
Lsi09G003540	Cucurbita pepo (Zucchini)	cpelsiB698
Lsi09G003540	Wild cucumber (PI 183967)	cpilsiB154
Lsi09G003540	Wild cucumber (PI 183967)	cpilsiB155
Lsi09G003540	Cucumber (Chinese Long) v2	culsiB156
Lsi09G003540	Melon (DHL92) v3.5.1	lsimeB030
Lsi09G003540	Melon (DHL92) v3.5.1	lsimeB036
Lsi09G003540	Watermelon (Charleston Gray)	lsiwcgB007
Lsi09G003540	Watermelon (Charleston Gray)	lsiwcgB023
Lsi09G003540	Watermelon (97103) v1	lsiwmB008
Lsi09G003540	Watermelon (97103) v1	lsiwmB024
Lsi09G003540	Cucumber (Gy14) v2	cgyblsiB141
Lsi09G003540	Cucumber (Gy14) v2	cgyblsiB142
Lsi09G003540	Melon (DHL92) v3.6.1	lsimedB012
Lsi09G003540	Melon (DHL92) v3.6.1	lsimedB036
Lsi09G003540	Melon (DHL92) v3.6.1	lsimedB037
Lsi09G003540	Cucumber (Chinese Long) v3	cuclsiB171
Lsi09G003540	Cucumber (Chinese Long) v3	cuclsiB172
Lsi09G003540	Watermelon (97103) v2	lsiwmbB010