Lsi09G003340 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi09G003340
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Ycf68 protein
Location	chr09 : 3454764 .. 3455466 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGGGGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCGCTGTGCGTATCGACCCGTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGACATGCCGCGAATCCTCTTGAAAGAGAGGGGTGCCTTCGGGAACGCGGACACAGGTGGTGCATGGCTGTCGTCAGCTCGTGCCGTAAGGTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTGTTTAGTTGCCAACCGTTGAGGTTGGAACCCTGAGCAGACTGCCGGTGATAAGCCGGAGGAAGGTGAGGATGACGTCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGCCGGGACAAAGGGTCGTGA

mRNA sequence

ATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGGGAGCGAATGGGATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCGCTGTGCGTATCGACCCGTGCAGTGCTGTAGCTAACGCGTTAAGGCTTGACATGCCGCGAATCCTCTTGAAAGAGAGGGGTGCCTTCGGGAACGCGGACACAGGTGGTGCATGGCTGTCGTCAGCTCGTGCCACTGCCGGTGATAAGCCGGAGGAAGGTGAGGATGACGTCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGCCGGGACAAAGGGTCGTGA

Coding sequence (CDS)

ATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGGGAGCGAATGGGATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCGCTGTGCGTATCGACCCGTGCAGTGCTGTAGCTAACGCGTTAAGGCTTGACATGCCGCGAATCCTCTTGAAAGAGAGGGGTGCCTTCGGGAACGCGGACACAGGTGGTGCATGGCTGTCGTCAGCTCGTGCCACTGCCGGTGATAAGCCGGAGGAAGGTGAGGATGACGTCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGCCGGGACAAAGGGTCGTGA

Protein sequence

MIGRKASVGGFLSPPSNPRAQPWTGGGNYQAGVRGANGIRYPSSPSRKRWILGAVRIDPCSAVANALRLDMPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKGS

Homology

[Close]

BLAST of Lsi09G003340 vs. TrEMBL
Match: M1CTX2_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400028997 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 1.4e-46
Identity = 100/131 (76.34%), Postives = 100/131 (76.34%), Query Frame = 1


Query: 1   MIGRKASVGGFLSPPSNPRAQPWTGGGNYQAGVRGANGIRYPSSPSRKRWILGAVRIDPC 60
           MIGRKASVGGFLSPPSNPRAQPWTGGGNYQAGVR            R  W          
Sbjct: 1   MIGRKASVGGFLSPPSNPRAQPWTGGGNYQAGVR-----------ERCLWE--------- 60

Query: 61  SAVANALRLDMPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGR 120
                  RLDMPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGR
Sbjct: 61  -------RLDMPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGR 104

Query: 121 HTCYNGRDKGS 132
           HTCYNGRDKGS
Sbjct: 121 HTCYNGRDKGS 104

[Close]

BLAST of Lsi09G003340 vs. TrEMBL
Match: A0A0D2ZV59_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 3.7e-28
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1


Query: 71  MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKG 130
           MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKG
Sbjct: 1   MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKG 60

Query: 131 S 132
           S
Sbjct: 61  S 61

[Close]

BLAST of Lsi09G003340 vs. TrEMBL
Match: M1DAC5_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400035391 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 3.7e-28
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1


Query: 71  MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKG 130
           MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKG
Sbjct: 1   MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKG 60

Query: 131 S 132
           S
Sbjct: 61  S 61

[Close]

BLAST of Lsi09G003340 vs. TrEMBL
Match: S8DAH6_9LAMI (Uncharacterized protein OS=Genlisea aurea GN=M569_00228 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 3.7e-28
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1


Query: 71  MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKG 130
           MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKG
Sbjct: 1   MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKG 60

Query: 131 S 132
           S
Sbjct: 61  S 61

[Close]

BLAST of Lsi09G003340 vs. TrEMBL
Match: K4CT09_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.4e-27
Identity = 60/61 (98.36%), Postives = 60/61 (98.36%), Query Frame = 1


Query: 71  MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKG 130
           MPRILLKERGAFGNAD GGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKG
Sbjct: 1   MPRILLKERGAFGNADAGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKG 60

Query: 131 S 132
           S
Sbjct: 61  S 61

[Close]

BLAST of Lsi09G003340 vs. NCBI nr
Match: gi|527209902|gb|EPS74511.1| (hypothetical protein M569_00228 [Genlisea aurea])

HSP 1 Score: 132.5 bits (332), Expect = 5.4e-28
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1


Query: 71  MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKG 130
           MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKG
Sbjct: 1   MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKG 60

Query: 131 S 132
           S
Sbjct: 61  S 61

[Close]

BLAST of Lsi09G003340 vs. NCBI nr
Match: gi|922378304|ref|XP_013459391.1| (hypothetical protein MTR_3g035635 [Medicago truncatula])

HSP 1 Score: 124.4 bits (311), Expect = 1.5e-25
Identity = 60/65 (92.31%), Postives = 60/65 (92.31%), Query Frame = 1


Query: 71  MPRILLKERGAFGNADTGGAWLSSARA----TAGDKPEEGEDDVKSSCPLCPGRHTCYNG 130
           MPRILLKER AFGNADTGGAWLSSARA    TAGDKPEEGEDDVKSSCPLCPGRHTCYNG
Sbjct: 1   MPRILLKERSAFGNADTGGAWLSSARAVRCWTAGDKPEEGEDDVKSSCPLCPGRHTCYNG 60

Query: 131 RDKGS 132
           RDKGS
Sbjct: 61  RDKGS 65

[Close]

BLAST of Lsi09G003340 vs. NCBI nr
Match: gi|357467739|ref|XP_003604154.1| (ycf68 protein [Medicago truncatula])

HSP 1 Score: 124.4 bits (311), Expect = 1.5e-25
Identity = 60/65 (92.31%), Postives = 60/65 (92.31%), Query Frame = 1


Query: 71  MPRILLKERGAFGNADTGGAWLSSARA----TAGDKPEEGEDDVKSSCPLCPGRHTCYNG 130
           MPRILLKER AFGNADTGGAWLSSARA    TAGDKPEEGEDDVKSSCPLCPGRHTCYNG
Sbjct: 1   MPRILLKERSAFGNADTGGAWLSSARAVRCWTAGDKPEEGEDDVKSSCPLCPGRHTCYNG 60

Query: 131 RDKGS 132
           RDKGS
Sbjct: 61  RDKGS 65

[Close]

BLAST of Lsi09G003340 vs. NCBI nr
Match: gi|922328559|ref|XP_013443672.1| (hypothetical protein MTR_0002s0270 [Medicago truncatula])

HSP 1 Score: 123.6 bits (309), Expect = 2.5e-25
Identity = 57/61 (93.44%), Postives = 58/61 (95.08%), Query Frame = 1


Query: 71  MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKG 130
           MPRILLKERGA GNADTGGAWLSSARATAG KPEEGED+ KSSCPLCPGRHTCYNGRDKG
Sbjct: 1   MPRILLKERGALGNADTGGAWLSSARATAGVKPEEGEDEAKSSCPLCPGRHTCYNGRDKG 60

Query: 131 S 132
           S
Sbjct: 61  S 61

[Close]

BLAST of Lsi09G003340 vs. NCBI nr
Match: gi|703148675|ref|XP_010109405.1| (hypothetical protein L484_011969 [Morus notabilis])

HSP 1 Score: 122.1 bits (305), Expect = 7.3e-25
Identity = 57/61 (93.44%), Postives = 57/61 (93.44%), Query Frame = 1


Query: 71  MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKG 130
           MPRILLKERGAF NADTGGAWLSSAR TA DK EEGEDDVKSSCPLCPGRHTCYNGRDKG
Sbjct: 1   MPRILLKERGAFRNADTGGAWLSSARTTADDKQEEGEDDVKSSCPLCPGRHTCYNGRDKG 60

Query: 131 S 132
           S
Sbjct: 61  S 61

The following BLAST results are available for this feature:

BLAST of Lsi09G003340 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi09G003340 vs. TrEMBL


Match Name	E-value	Identity	Description
M1CTX2_SOLTU	1.4e-46	76.34	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400028997 PE=4 SV=1	[more]
A0A0D2ZV59_BRAOL	3.7e-28	100.00	Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1	[more]
M1DAC5_SOLTU	3.7e-28	100.00	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400035391 PE=4 SV=1	[more]
S8DAH6_9LAMI	3.7e-28	100.00	Uncharacterized protein OS=Genlisea aurea GN=M569_00228 PE=4 SV=1	[more]
K4CT09_SOLLC	1.4e-27	98.36	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]

BLAST of Lsi09G003340 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi09G003340 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|527209902\|gb\|EPS74511.1\|	5.4e-28	100.00	hypothetical protein M569_00228 [Genlisea aurea]	[more]
gi\|922378304\|ref\|XP_013459391.1\|	1.5e-25	92.31	hypothetical protein MTR_3g035635 [Medicago truncatula]	[more]
gi\|357467739\|ref\|XP_003604154.1\|	1.5e-25	92.31	ycf68 protein [Medicago truncatula]	[more]
gi\|922328559\|ref\|XP_013443672.1\|	2.5e-25	93.44	hypothetical protein MTR_0002s0270 [Medicago truncatula]	[more]
gi\|703148675\|ref\|XP_010109405.1\|	7.3e-25	93.44	hypothetical protein L484_011969 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G003340.1	Lsi09G003340.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34890	FAMILY NOT NAMED	coord: 71..131 score: 3.7
None	No IPR available	PANTHER	PTHR34890:SF2	SUBFAMILY NOT NAMED	coord: 71..131 score: 3.7

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi09G003340	Bottle gourd (USVL1VR-Ls)	lsilsiB008
Lsi09G003340	Cucumber (Gy14) v1	cgylsiB411
Lsi09G003340	Cucumber (Gy14) v1	cgylsiB487
Lsi09G003340	Cucurbita maxima (Rimu)	cmalsiB267
Lsi09G003340	Cucurbita maxima (Rimu)	cmalsiB365
Lsi09G003340	Cucurbita maxima (Rimu)	cmalsiB530
Lsi09G003340	Cucurbita moschata (Rifu)	cmolsiB255
Lsi09G003340	Cucurbita moschata (Rifu)	cmolsiB353
Lsi09G003340	Cucurbita moschata (Rifu)	cmolsiB516
Lsi09G003340	Cucurbita pepo (Zucchini)	cpelsiB131
Lsi09G003340	Cucurbita pepo (Zucchini)	cpelsiB582
Lsi09G003340	Wild cucumber (PI 183967)	cpilsiB155
Lsi09G003340	Wild cucumber (PI 183967)	cpilsiB322
Lsi09G003340	Cucumber (Chinese Long) v2	culsiB156
Lsi09G003340	Cucumber (Chinese Long) v2	culsiB322
Lsi09G003340	Melon (DHL92) v3.5.1	lsimeB012
Lsi09G003340	Melon (DHL92) v3.5.1	lsimeB036
Lsi09G003340	Watermelon (Charleston Gray)	lsiwcgB008
Lsi09G003340	Watermelon (Charleston Gray)	lsiwcgB023
Lsi09G003340	Watermelon (97103) v1	lsiwmB024
Lsi09G003340	Watermelon (97103) v1	lsiwmB027
Lsi09G003340	Cucumber (Gy14) v2	cgyblsiB141
Lsi09G003340	Cucumber (Gy14) v2	cgyblsiB294
Lsi09G003340	Melon (DHL92) v3.6.1	lsimedB012
Lsi09G003340	Melon (DHL92) v3.6.1	lsimedB036
Lsi09G003340	Silver-seed gourd	carlsiB836
Lsi09G003340	Silver-seed gourd	carlsiB851
Lsi09G003340	Cucumber (Chinese Long) v3	cuclsiB171
Lsi09G003340	Cucumber (Chinese Long) v3	cuclsiB345
Lsi09G003340	Watermelon (97103) v2	lsiwmbB007
Lsi09G003340	Wax gourd	lsiwgoB010