Lsi09G003340 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi09G003340
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionYcf68 protein
Locationchr09 : 3454764 .. 3455466 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGGGGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGGCGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGGGATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCGCTGTGCGTATCGACCCGTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGACATGCCGCGAATCCTCTTGAAAGAGAGGGGTGCCTTCGGGAACGCGGACACAGGTGGTGCATGGCTGTCGTCAGCTCGTGCCGTAAGGTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTGTTTAGTTGCCAACCGTTGAGGTTGGAACCCTGAGCAGACTGCCGGTGATAAGCCGGAGGAAGGTGAGGATGACGTCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGCCGGGACAAAGGGTCGTGA

mRNA sequence

ATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGGGAGCGAATGGGATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCGCTGTGCGTATCGACCCGTGCAGTGCTGTAGCTAACGCGTTAAGGCTTGACATGCCGCGAATCCTCTTGAAAGAGAGGGGTGCCTTCGGGAACGCGGACACAGGTGGTGCATGGCTGTCGTCAGCTCGTGCCACTGCCGGTGATAAGCCGGAGGAAGGTGAGGATGACGTCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGCCGGGACAAAGGGTCGTGA

Coding sequence (CDS)

ATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGTCAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGGGAGCGAATGGGATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCGCTGTGCGTATCGACCCGTGCAGTGCTGTAGCTAACGCGTTAAGGCTTGACATGCCGCGAATCCTCTTGAAAGAGAGGGGTGCCTTCGGGAACGCGGACACAGGTGGTGCATGGCTGTCGTCAGCTCGTGCCACTGCCGGTGATAAGCCGGAGGAAGGTGAGGATGACGTCAAGTCATCATGCCCCTTATGCCCTGGGCGACACACGTGCTACAATGGCCGGGACAAAGGGTCGTGA

Protein sequence

MIGRKASVGGFLSPPSNPRAQPWTGGGNYQAGVRGANGIRYPSSPSRKRWILGAVRIDPCSAVANALRLDMPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKGS
BLAST of Lsi09G003340 vs. TrEMBL
Match: M1CTX2_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400028997 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 1.4e-46
Identity = 100/131 (76.34%), Postives = 100/131 (76.34%), Query Frame = 1

Query: 1   MIGRKASVGGFLSPPSNPRAQPWTGGGNYQAGVRGANGIRYPSSPSRKRWILGAVRIDPC 60
           MIGRKASVGGFLSPPSNPRAQPWTGGGNYQAGVR            R  W          
Sbjct: 1   MIGRKASVGGFLSPPSNPRAQPWTGGGNYQAGVR-----------ERCLWE--------- 60

Query: 61  SAVANALRLDMPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGR 120
                  RLDMPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGR
Sbjct: 61  -------RLDMPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGR 104

Query: 121 HTCYNGRDKGS 132
           HTCYNGRDKGS
Sbjct: 121 HTCYNGRDKGS 104

BLAST of Lsi09G003340 vs. TrEMBL
Match: A0A0D2ZV59_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 3.7e-28
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1

Query: 71  MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKG 130
           MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKG
Sbjct: 1   MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKG 60

Query: 131 S 132
           S
Sbjct: 61  S 61

BLAST of Lsi09G003340 vs. TrEMBL
Match: M1DAC5_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400035391 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 3.7e-28
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1

Query: 71  MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKG 130
           MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKG
Sbjct: 1   MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKG 60

Query: 131 S 132
           S
Sbjct: 61  S 61

BLAST of Lsi09G003340 vs. TrEMBL
Match: S8DAH6_9LAMI (Uncharacterized protein OS=Genlisea aurea GN=M569_00228 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 3.7e-28
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1

Query: 71  MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKG 130
           MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKG
Sbjct: 1   MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKG 60

Query: 131 S 132
           S
Sbjct: 61  S 61

BLAST of Lsi09G003340 vs. TrEMBL
Match: K4CT09_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.4e-27
Identity = 60/61 (98.36%), Postives = 60/61 (98.36%), Query Frame = 1

Query: 71  MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKG 130
           MPRILLKERGAFGNAD GGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKG
Sbjct: 1   MPRILLKERGAFGNADAGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKG 60

Query: 131 S 132
           S
Sbjct: 61  S 61

BLAST of Lsi09G003340 vs. NCBI nr
Match: gi|527209902|gb|EPS74511.1| (hypothetical protein M569_00228 [Genlisea aurea])

HSP 1 Score: 132.5 bits (332), Expect = 5.4e-28
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 1

Query: 71  MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKG 130
           MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKG
Sbjct: 1   MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKG 60

Query: 131 S 132
           S
Sbjct: 61  S 61

BLAST of Lsi09G003340 vs. NCBI nr
Match: gi|922378304|ref|XP_013459391.1| (hypothetical protein MTR_3g035635 [Medicago truncatula])

HSP 1 Score: 124.4 bits (311), Expect = 1.5e-25
Identity = 60/65 (92.31%), Postives = 60/65 (92.31%), Query Frame = 1

Query: 71  MPRILLKERGAFGNADTGGAWLSSARA----TAGDKPEEGEDDVKSSCPLCPGRHTCYNG 130
           MPRILLKER AFGNADTGGAWLSSARA    TAGDKPEEGEDDVKSSCPLCPGRHTCYNG
Sbjct: 1   MPRILLKERSAFGNADTGGAWLSSARAVRCWTAGDKPEEGEDDVKSSCPLCPGRHTCYNG 60

Query: 131 RDKGS 132
           RDKGS
Sbjct: 61  RDKGS 65

BLAST of Lsi09G003340 vs. NCBI nr
Match: gi|357467739|ref|XP_003604154.1| (ycf68 protein [Medicago truncatula])

HSP 1 Score: 124.4 bits (311), Expect = 1.5e-25
Identity = 60/65 (92.31%), Postives = 60/65 (92.31%), Query Frame = 1

Query: 71  MPRILLKERGAFGNADTGGAWLSSARA----TAGDKPEEGEDDVKSSCPLCPGRHTCYNG 130
           MPRILLKER AFGNADTGGAWLSSARA    TAGDKPEEGEDDVKSSCPLCPGRHTCYNG
Sbjct: 1   MPRILLKERSAFGNADTGGAWLSSARAVRCWTAGDKPEEGEDDVKSSCPLCPGRHTCYNG 60

Query: 131 RDKGS 132
           RDKGS
Sbjct: 61  RDKGS 65

BLAST of Lsi09G003340 vs. NCBI nr
Match: gi|922328559|ref|XP_013443672.1| (hypothetical protein MTR_0002s0270 [Medicago truncatula])

HSP 1 Score: 123.6 bits (309), Expect = 2.5e-25
Identity = 57/61 (93.44%), Postives = 58/61 (95.08%), Query Frame = 1

Query: 71  MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKG 130
           MPRILLKERGA GNADTGGAWLSSARATAG KPEEGED+ KSSCPLCPGRHTCYNGRDKG
Sbjct: 1   MPRILLKERGALGNADTGGAWLSSARATAGVKPEEGEDEAKSSCPLCPGRHTCYNGRDKG 60

Query: 131 S 132
           S
Sbjct: 61  S 61

BLAST of Lsi09G003340 vs. NCBI nr
Match: gi|703148675|ref|XP_010109405.1| (hypothetical protein L484_011969 [Morus notabilis])

HSP 1 Score: 122.1 bits (305), Expect = 7.3e-25
Identity = 57/61 (93.44%), Postives = 57/61 (93.44%), Query Frame = 1

Query: 71  MPRILLKERGAFGNADTGGAWLSSARATAGDKPEEGEDDVKSSCPLCPGRHTCYNGRDKG 130
           MPRILLKERGAF NADTGGAWLSSAR TA DK EEGEDDVKSSCPLCPGRHTCYNGRDKG
Sbjct: 1   MPRILLKERGAFRNADTGGAWLSSARTTADDKQEEGEDDVKSSCPLCPGRHTCYNGRDKG 60

Query: 131 S 132
           S
Sbjct: 61  S 61

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
M1CTX2_SOLTU1.4e-4676.34Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400028997 PE=4 SV=1[more]
A0A0D2ZV59_BRAOL3.7e-28100.00Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1[more]
M1DAC5_SOLTU3.7e-28100.00Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400035391 PE=4 SV=1[more]
S8DAH6_9LAMI3.7e-28100.00Uncharacterized protein OS=Genlisea aurea GN=M569_00228 PE=4 SV=1[more]
K4CT09_SOLLC1.4e-2798.36Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|527209902|gb|EPS74511.1|5.4e-28100.00hypothetical protein M569_00228 [Genlisea aurea][more]
gi|922378304|ref|XP_013459391.1|1.5e-2592.31hypothetical protein MTR_3g035635 [Medicago truncatula][more]
gi|357467739|ref|XP_003604154.1|1.5e-2592.31ycf68 protein [Medicago truncatula][more]
gi|922328559|ref|XP_013443672.1|2.5e-2593.44hypothetical protein MTR_0002s0270 [Medicago truncatula][more]
gi|703148675|ref|XP_010109405.1|7.3e-2593.44hypothetical protein L484_011969 [Morus notabilis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0009507 chloroplast
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi09G003340.1Lsi09G003340.1mRNA


Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR34890FAMILY NOT NAMEDcoord: 71..131
score: 3.7
NoneNo IPR availablePANTHERPTHR34890:SF2SUBFAMILY NOT NAMEDcoord: 71..131
score: 3.7

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None