Lsi09G003310 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi09G003310
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionSignal anchor, putative
Locationchr09 : 3448224 .. 3449025 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAATAGATGGCGAGTGCCTAATCGAATTGATCGGGTCATGTAGGAACAAGGTTCAAGTCTACCGGTCTGTTAGGATGCCTCAGCTGCATACATCACTGCACTTCCACTTGACACCTATCGTGATGATAAACGGCTCATCTCGCCGTGACCTTCTCTTGAATTCTCAAAACTTCTGTCGCTCCATCCCCGCAGGGGCAGAGAACCCATCGCTGTCTCGGCTGTGCTACCGGAGGCTCTGGGGAAGTCGGAATAGGAGAGCACTCATCTTGGGGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCGTTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACTAGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACGACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACATACTACAGCCCCAGGTGGCGAAGAGCCGACATCGAGGTGCCAAACCTTCCCGTCGATGTGAGCTCTTGGGGAAGATCAGCCTGTTATCCCTAGAGTAACTTTTATCCGTTGAGCGACGGCCCTTCCACTCGGCACCGTCGGATCACTAAGGCCGACTTTCGTCCCTGCTCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCCGTCTGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTACGCCCCATAG

mRNA sequence

ATGAAAATAGATGGCGAGTGCCTAATCGAATTGATCGGGTCATGTAGGAACAAGGTTCAAGTCTACCGGTCTGTTAGGATGCCTCAGCTGCATACATCACTGCACTTCCACTTGACACCTATCGTGATGATAAACGGCTCATCTCGCCGTGACCTTCTCTTGAATTCTCAAAACTTCTGTCGCTCCATCCCCGCAGGGGCAGAGAACCCATCGCTGTCTCGGCTGTGCTACCGGAGGCTCTGGGGAAGTCGGAATAGGAGAGCACTCATCTTGGGGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCGTTTACCGTGGGCACGATAACTGGTACACCAGAGCGACGGCCCTTCCACTCGGCACCGTCGGATCACTAAGGCCGACTTTCGTCCCTGCTCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCCGTCTGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTACGCCCCATAG

Coding sequence (CDS)

ATGAAAATAGATGGCGAGTGCCTAATCGAATTGATCGGGTCATGTAGGAACAAGGTTCAAGTCTACCGGTCTGTTAGGATGCCTCAGCTGCATACATCACTGCACTTCCACTTGACACCTATCGTGATGATAAACGGCTCATCTCGCCGTGACCTTCTCTTGAATTCTCAAAACTTCTGTCGCTCCATCCCCGCAGGGGCAGAGAACCCATCGCTGTCTCGGCTGTGCTACCGGAGGCTCTGGGGAAGTCGGAATAGGAGAGCACTCATCTTGGGGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCGTTTACCGTGGGCACGATAACTGGTACACCAGAGCGACGGCCCTTCCACTCGGCACCGTCGGATCACTAAGGCCGACTTTCGTCCCTGCTCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCCGTCTGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTACGCCCCATAG

Protein sequence

MKIDGECLIELIGSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWYTRATALPLGTVGSLRPTFVPARRVGLAVKLPSAFALEGQSPSGPRKPLHASVTFWEAYAP
Homology
[Close]
BLAST of Lsi09G003310 vs. TrEMBL
Match: W9SEP0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_000614 PE=4 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 3.3e-91
Identity = 167/182 (91.76%), Postives = 171/182 (93.96%), Query Frame = 1 

Query: 1   MKIDGECLIELIGSCRNKVQVYRS--VRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQN 60
           MKIDGECLIELIGSCRNKVQVYR   VRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQN
Sbjct: 1   MKIDGECLIELIGSCRNKVQVYRCIPVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQN 60

Query: 61  FCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDN 120
           F  S PAGAENPSLS LCYRRLWGSRN+RALILGWAY+LDAF+SYPL TWLPSVYRGHDN
Sbjct: 61  FYHSTPAGAENPSLSWLCYRRLWGSRNKRALILGWAYFLDAFNSYPLHTWLPSVYRGHDN 120

Query: 121 WYTRATALPLGTVGSLRPTFVPARRVGLAVKLPSAFALEGQSPSGPRKPLHASVTFWEAY 180
           WYTRATALP GTVGSLR TFVPAR VGLA+KLPSAFALEGQSPSGPRKPLHASVTFWEAY
Sbjct: 121 WYTRATALPPGTVGSLRLTFVPARWVGLAIKLPSAFALEGQSPSGPRKPLHASVTFWEAY 180

[Close]
BLAST of Lsi09G003310 vs. TrEMBL
Match: W9RPF7_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_018827 PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 2.0e-72
Identity = 134/138 (97.10%), Postives = 134/138 (97.10%), Query Frame = 1 

Query: 43  MINGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSS 102
           MINGSSRRDLLLNSQNFC S PAGAENPSLS LCYRRLWGSRNRRALILGWAYYLDAFSS
Sbjct: 1   MINGSSRRDLLLNSQNFCHSTPAGAENPSLSWLCYRRLWGSRNRRALILGWAYYLDAFSS 60

Query: 103 YPLRTWLPSVYRGHDNWYTRATALPLGTVGSLRPTFVPARRVGLAVKLPSAFALEGQSPS 162
           YPLRTWLPSVYRGHDNWYTRATALP GTVGSLRPTFVPARRVGLAVKLPSAFALEGQSPS
Sbjct: 61  YPLRTWLPSVYRGHDNWYTRATALPPGTVGSLRPTFVPARRVGLAVKLPSAFALEGQSPS 120

Query: 163 GPRKPLHASVTFWEAYAP 181
           GPRKPLHASVTFWEAYAP
Sbjct: 121 GPRKPLHASVTFWEAYAP 138

[Close]
BLAST of Lsi09G003310 vs. TrEMBL
Match: A0A078G2W2_BRANA (BnaC09g16480D protein OS=Brassica napus GN=BnaC09g29120D PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 1.4e-65
Identity = 120/128 (93.75%), Postives = 122/128 (95.31%), Query Frame = 1 

Query: 1   MKIDGECLIELIGSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQNFC 60
           MKIDGECLIELI SCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQNFC
Sbjct: 1   MKIDGECLIELIRSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQNFC 60

Query: 61  RSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWY 120
            SIPAGAENP LSRLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWY
Sbjct: 61  HSIPAGAENPLLSRLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWY 120

Query: 121 TRATALPL 129
           TR  + P+
Sbjct: 121 TRGASFPV 128

[Close]
BLAST of Lsi09G003310 vs. TrEMBL
Match: A0A0D2ZTA1_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 1.4e-65
Identity = 120/128 (93.75%), Postives = 122/128 (95.31%), Query Frame = 1 

Query: 1   MKIDGECLIELIGSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQNFC 60
           MKIDGECLIELI SCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQNFC
Sbjct: 1   MKIDGECLIELIRSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQNFC 60

Query: 61  RSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWY 120
            SIPAGAENP LSRLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWY
Sbjct: 61  HSIPAGAENPLLSRLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWY 120

Query: 121 TRATALPL 129
           TR  + P+
Sbjct: 121 TRGASFPV 128

[Close]
BLAST of Lsi09G003310 vs. TrEMBL
Match: A0A075VX86_CAPAN (Uncharacterized protein OS=Capsicum annuum GN=orf132a PE=4 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 4.0e-65
Identity = 121/129 (93.80%), Postives = 124/129 (96.12%), Query Frame = 1 

Query: 1   MKIDGECLIELIGSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQ-NF 60
           MKIDGECLIELI SCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQ NF
Sbjct: 1   MKIDGECLIELIRSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQKNF 60

Query: 61  CRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNW 120
           CRSIPAGAENPSLSRLCYR+LWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNW
Sbjct: 61  CRSIPAGAENPSLSRLCYRKLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNW 120

Query: 121 YTRATALPL 129
           YTR  + P+
Sbjct: 121 YTRGASFPV 129

[Close]
BLAST of Lsi09G003310 vs. NCBI nr
Match: gi|703133119|ref|XP_010105288.1| (hypothetical protein L484_000614 [Morus notabilis])

HSP 1 Score: 342.4 bits (877), Expect = 4.7e-91
Identity = 167/182 (91.76%), Postives = 171/182 (93.96%), Query Frame = 1 

Query: 1   MKIDGECLIELIGSCRNKVQVYRS--VRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQN 60
           MKIDGECLIELIGSCRNKVQVYR   VRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQN
Sbjct: 1   MKIDGECLIELIGSCRNKVQVYRCIPVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQN 60

Query: 61  FCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDN 120
           F  S PAGAENPSLS LCYRRLWGSRN+RALILGWAY+LDAF+SYPL TWLPSVYRGHDN
Sbjct: 61  FYHSTPAGAENPSLSWLCYRRLWGSRNKRALILGWAYFLDAFNSYPLHTWLPSVYRGHDN 120

Query: 121 WYTRATALPLGTVGSLRPTFVPARRVGLAVKLPSAFALEGQSPSGPRKPLHASVTFWEAY 180
           WYTRATALP GTVGSLR TFVPAR VGLA+KLPSAFALEGQSPSGPRKPLHASVTFWEAY
Sbjct: 121 WYTRATALPPGTVGSLRLTFVPARWVGLAIKLPSAFALEGQSPSGPRKPLHASVTFWEAY 180

[Close]
BLAST of Lsi09G003310 vs. NCBI nr
Match: gi|703131006|ref|XP_010104774.1| (hypothetical protein L484_018827 [Morus notabilis])

HSP 1 Score: 280.0 bits (715), Expect = 2.9e-72
Identity = 134/138 (97.10%), Postives = 134/138 (97.10%), Query Frame = 1 

Query: 43  MINGSSRRDLLLNSQNFCRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSS 102
           MINGSSRRDLLLNSQNFC S PAGAENPSLS LCYRRLWGSRNRRALILGWAYYLDAFSS
Sbjct: 1   MINGSSRRDLLLNSQNFCHSTPAGAENPSLSWLCYRRLWGSRNRRALILGWAYYLDAFSS 60

Query: 103 YPLRTWLPSVYRGHDNWYTRATALPLGTVGSLRPTFVPARRVGLAVKLPSAFALEGQSPS 162
           YPLRTWLPSVYRGHDNWYTRATALP GTVGSLRPTFVPARRVGLAVKLPSAFALEGQSPS
Sbjct: 61  YPLRTWLPSVYRGHDNWYTRATALPPGTVGSLRPTFVPARRVGLAVKLPSAFALEGQSPS 120

Query: 163 GPRKPLHASVTFWEAYAP 181
           GPRKPLHASVTFWEAYAP
Sbjct: 121 GPRKPLHASVTFWEAYAP 138

[Close]
BLAST of Lsi09G003310 vs. NCBI nr
Match: gi|674871092|emb|CDY63594.1| (BnaUnng00820D [Brassica napus])

HSP 1 Score: 257.3 bits (656), Expect = 2.0e-65
Identity = 120/128 (93.75%), Postives = 122/128 (95.31%), Query Frame = 1 

Query: 1   MKIDGECLIELIGSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQNFC 60
           MKIDGECLIELI SCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQNFC
Sbjct: 1   MKIDGECLIELIRSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQNFC 60

Query: 61  RSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWY 120
            SIPAGAENP LSRLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWY
Sbjct: 61  HSIPAGAENPLLSRLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWY 120

Query: 121 TRATALPL 129
           TR  + P+
Sbjct: 121 TRGASFPV 128

[Close]
BLAST of Lsi09G003310 vs. NCBI nr
Match: gi|675895250|ref|YP_009049724.1| (hypothetical protein (mitochondrion) [Capsicum annuum])

HSP 1 Score: 255.8 bits (652), Expect = 5.8e-65
Identity = 121/129 (93.80%), Postives = 124/129 (96.12%), Query Frame = 1 

Query: 1   MKIDGECLIELIGSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQ-NF 60
           MKIDGECLIELI SCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQ NF
Sbjct: 1   MKIDGECLIELIRSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQKNF 60

Query: 61  CRSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNW 120
           CRSIPAGAENPSLSRLCYR+LWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNW
Sbjct: 61  CRSIPAGAENPSLSRLCYRKLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNW 120

Query: 121 YTRATALPL 129
           YTR  + P+
Sbjct: 121 YTRGASFPV 129

[Close]
BLAST of Lsi09G003310 vs. NCBI nr
Match: gi|78103323|ref|YP_358637.1| (hypothetical protein PhapfoPp091 [Phalaenopsis aphrodite subsp. formosana])

HSP 1 Score: 245.4 bits (625), Expect = 7.8e-62
Identity = 114/128 (89.06%), Postives = 119/128 (92.97%), Query Frame = 1 

Query: 1   MKIDGECLIELIGSCRNKVQVYRSVRMPQLHTSLHFHLTPIVMINGSSRRDLLLNSQNFC 60
           MKIDGECLIELI SCRNKVQ+ RSVRMPQLHTSLHFHLTPIVMINGSSRRDL+L+SQ FC
Sbjct: 1   MKIDGECLIELIRSCRNKVQISRSVRMPQLHTSLHFHLTPIVMINGSSRRDLILDSQYFC 60

Query: 61  RSIPAGAENPSLSRLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRGHDNWY 120
           RSIP GAENP LSRLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYR HDNWY
Sbjct: 61  RSIPTGAENPPLSRLCYRRLWGSRNRRALILGWAYYLDAFSSYPLRTWLPSVYRRHDNWY 120

Query: 121 TRATALPL 129
           TR  + P+
Sbjct: 121 TRGASFPV 128

The following BLAST results are available for this feature:
BLAST of Lsi09G003310 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi09G003310 vs. TrEMBL
Match NameE-valueIdentityDescription
W9SEP0_9ROSA3.3e-9191.76Uncharacterized protein OS=Morus notabilis GN=L484_000614 PE=4 SV=1[more]
W9RPF7_9ROSA2.0e-7297.10Uncharacterized protein OS=Morus notabilis GN=L484_018827 PE=4 SV=1[more]
A0A078G2W2_BRANA1.4e-6593.75BnaC09g16480D protein OS=Brassica napus GN=BnaC09g29120D PE=4 SV=1[more]
A0A0D2ZTA1_BRAOL1.4e-6593.75Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1[more]
A0A075VX86_CAPAN4.0e-6593.80Uncharacterized protein OS=Capsicum annuum GN=orf132a PE=4 SV=1[more]
BLAST of Lsi09G003310 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi09G003310 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|703133119|ref|XP_010105288.1|4.7e-9191.76hypothetical protein L484_000614 [Morus notabilis][more]
gi|703131006|ref|XP_010104774.1|2.9e-7297.10hypothetical protein L484_018827 [Morus notabilis][more]
gi|674871092|emb|CDY63594.1|2.0e-6593.75BnaUnng00820D [Brassica napus][more]
gi|675895250|ref|YP_009049724.1|5.8e-6593.80hypothetical protein (mitochondrion) [Capsicum annuum][more]
gi|78103323|ref|YP_358637.1|7.8e-6289.06hypothetical protein PhapfoPp091 [Phalaenopsis aphrodite subsp. formosana][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0009507 chloroplast
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005739 mitochondrion
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi09G003310.1Lsi09G003310.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi09G003310Cucumber (Chinese Long) v3cuclsiB171
Lsi09G003310Cucumber (Chinese Long) v3cuclsiB345
Lsi09G003310Watermelon (97103) v2lsiwmbB007
Lsi09G003310Wax gourdlsiwgoB010
Lsi09G003310Bottle gourd (USVL1VR-Ls)lsilsiB008
Lsi09G003310Cucumber (Gy14) v1cgylsiB411
Lsi09G003310Cucumber (Gy14) v1cgylsiB487
Lsi09G003310Cucurbita maxima (Rimu)cmalsiB267
Lsi09G003310Cucurbita maxima (Rimu)cmalsiB365
Lsi09G003310Cucurbita maxima (Rimu)cmalsiB530
Lsi09G003310Cucurbita moschata (Rifu)cmolsiB255
Lsi09G003310Cucurbita moschata (Rifu)cmolsiB353
Lsi09G003310Cucurbita moschata (Rifu)cmolsiB516
Lsi09G003310Cucurbita pepo (Zucchini)cpelsiB131
Lsi09G003310Cucurbita pepo (Zucchini)cpelsiB582
Lsi09G003310Wild cucumber (PI 183967)cpilsiB155
Lsi09G003310Wild cucumber (PI 183967)cpilsiB322
Lsi09G003310Cucumber (Chinese Long) v2culsiB156
Lsi09G003310Cucumber (Chinese Long) v2culsiB322
Lsi09G003310Melon (DHL92) v3.5.1lsimeB012
Lsi09G003310Melon (DHL92) v3.5.1lsimeB036
Lsi09G003310Watermelon (Charleston Gray)lsiwcgB008
Lsi09G003310Watermelon (Charleston Gray)lsiwcgB023
Lsi09G003310Watermelon (97103) v1lsiwmB024
Lsi09G003310Watermelon (97103) v1lsiwmB027
Lsi09G003310Cucumber (Gy14) v2cgyblsiB141
Lsi09G003310Cucumber (Gy14) v2cgyblsiB294
Lsi09G003310Melon (DHL92) v3.6.1lsimedB012
Lsi09G003310Melon (DHL92) v3.6.1lsimedB036
Lsi09G003310Silver-seed gourdcarlsiB836
Lsi09G003310Silver-seed gourdcarlsiB851