Lsi09G003290 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi09G003290
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionCytochrome b reductase 1
Locationchr09 : 3446480 .. 3448887 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAACCGTAAGCTTCCAAGCAGTGGGAGGAGACCAGGACTCTGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCATAGGCAGTGGCTTGGTTAAGGGAACCCACCGGAGCCGTAGCGAAAGCGAGTCTTCATGGGGCAATTTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCCCCGAAATGCGTTGAGGCGCAGCAGTTGACTGGACATCTAGGGGTAAAGCACTGTTTCGGTGCGGGCCGCGAGAGCGGTACCAAATCGAGGCAAACTCTGAATACTAGATATGATCTCAAAATAACAGGGGTCAAGGTCGGCCAGTGAGACGATGGGGGATAAGCTTCATCGTCGAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATAAAGGAGGTAGGGGTGCAGAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCACCCTTGAAAGAGTGCGTAATAGCTCACTGATCGAGCGCTCTTGCGCCGAAGATGAACGGGGCTAAGCGATCTGCCGAAGCTGTGGGATGTAAAAATGCATCGGTAGGGGAGCGTTCCGCCTTAGAGGGAAGCACCTGCGCGAGCAGTGGTGGACGAAGCGGAAGCGAGAATGTCGGCTTGAGTAACGCAAACATTGGTGAGAATCCAATGCCCCGAAAACCTAAGGGTTCCTCCGCAAGGTTCGTCCACGGAGGGTGAGTCAGGGCCTAAGATCAGGCCGAAAGGCGTAGTCGATGGACAACAGGTGAATATTCCTGTACTACCCCTTGTTGGTCCCGAGGGACGGAGGAGGCTAGGTTAGCCGAAAGATGGTTATCGGTTCAAGGACGCAAGGTGCCCCTGTTTTTTCAGGGTAAGAAGGGGTAGAGAAAATACCTCGAGCCAATGTTCGAGTACCAGGCGCTACGGCGCTGAAGTAACCCATGCCATACTCCCAGGAAAAGCTCGAACGACCTTCAACAAAAGGGTACCTGTACCCGAAACCGACACAGGTGGGTAGGTAGAGAATACCTAGGGGCGCGAGACAACTCTCTCTAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAAGGGGGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGTAAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAAGGAAGTTGGTGACCTGATGACAGGGGAGCCGGCGACCGAAGCCCCGGTGAACGGCGGCCGTAACTATAACGGTCCTAAGGTAGCGAAATTCCTTGTCGGGTAAGTTCCGACCCGCACGAAAGGCGTAACGATCTGGGCACTGTCTCGGAGAGAGGCTCGGTGAAATAGACATGTCTGTGAAGATGCGGACTACCTGCACCTGGACAGAAAGACCCTATGAAGCTTCACTGTTCCCTGGGATTGGCTTTGGGCCTTTCCTGCGCAGCTTAGGTGGAAGGCGAAGAAGGCCCCCTTCCGGGGGGGCCCGAGCCATCAGTGAGATACCACTCTGGAAGAGCTAGAATTCTAACCTTGTGTCAGGACCTACGGGCCAAGGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGCGTGCAAAGGTTTCCTCGGGCCAGACGGAGATTGGCCCTCGAGTGCAAAGGCAGAAGGGAGCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGGTGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATAACAGGCTGATCTTCCCCAAGAGCTCACATCGACGGGAAGGTTTGGCACCTCGATGTCGGCTCTTCGCCACCTGGGGCTGTAGTATGTTCCAAGGGTTGGGCTGTTCGCCCATTAAAGCGGTACGTGAGCTGGGTTCAGAACGTCGTGAGACAGTTCGGTCCATATCCGGTGTGGGCGTTAGAGCATTGAGAGGACCTTTCCCTAGTACGAGAGGACCGGGAAGGACGCACCTCTGGTGTACCAGTTATCGTGCCCACGGTAAACGCTGGGTAGCCAAGTGCGGAGCGGATAACTGCTGAAAGCATCTAAGTAGTAAGCCCACCCCAAGATGAGTGCTCTCCTATTCCGACTTCCCCAGAGCCTCCGGTAGCACAGCCGAGACAGCGATGGGTTCTCTGCCCCTGCGGGGATGGAGCGACAGAAGTTTTGAGAATTCAAGAGAAGGTCACGGCGAGATGA

mRNA sequence

ATGAAACCAATGAGCCGGCGACTCATAGGCAGTGGCTTGGTTAAGGGAACCCACCGGAGCCGTAGCGAAAGCGAGTCTTCATGGGGCAATTTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCCCCGAAATGCGTTGAGGCGCAGCAGTTGACTGGACATCTAGGGGGGTCAAGGTCGGCCAGTGAGACGATGGGGGATAAGCTTCATCGTCGAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATAAAGGAGATGAACGGGGCTAAGCGATCTGCCGAAGCTGTGGGATGTAAAAATGCATCGGTAGGGGAGCGTTCCGCCTTAGAGGGAAGCACCTGCGCGAGCAGTGGTGGACGAAGCGGAAGCGAGAATGTCGGCTTGAGTAACGCAAACATTGGTGAGAATCCAATGCCCCGAAAACCTAAGGGTTCCTCCGCAAGGTTCGTCCACGGAGGGGTAAGAAGGGGTAGAGAAAATACCTCGAGCCAATGTTCGAGTACCAGGCGCTACGGCGCTGAAGTAACCCATGCCATACTCCCAGGAAAAGCTCGAACGACCTTCAACAAAAGGGTACCTGTACCCGAAACCGACACAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAAGGGGGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAAGGAAGTTGGTGACCTGATGACAGGGGAGCCGGCGACCGAAGCCCCGGTGAACGGCGGCCGTAACTATAACGGTCCTAAGGTAGCGAAATTCCTTGTCGGTTCCGACCCGCACGAAAGGCGTAACGATCTGGGCACTGTCTCGGAGAGAGGCTCGGTGGAAGGCGAAGAAGGCCCCCTTCCGGGGGGGCCCGAGCCATCAGTGAGATACCACTCTGGAAGAGCTAGAATTCTAACCTTGTGTCAGGACCTACGGGCCAAGGGACAGTCTCAGGCCTCCCAAAAGGTAACGGAGGCGTGCAAAGGTTTCCTCGGGCCAGACGGAGATTGGCCCTCGAGTGCAAAGGCAGAAGGGAGCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGGTGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAAGCTCACATCGACGGGAAGGTTTGGCACCTCGATGTCGGCTCTTCGCCACCTGGGGCTGTAGTATGTTCCAAGGGTTGGGCTGTTCGCCCATTAAAGCGGTACGTGAGCTGGGTTCAGAACGTCGTGAGACAGTTCGGTCCATATCCGGTGTGGGCGTTAGAGCATTGAGAGGACCTTTCCCTAGTACGAGAGGACCGGGAAGGACGCACCTCTGGTGTACCAGTTATCGTGCCCACGTAAGCCCACCCCAAGATGAGTGCTCTCCTATTCCGACTTCCCCAGAGCCTCCGGTAGCACAGCCGAGACAGCGATGGGTTCTCTGCCCCTGCGGGGATGGAGCGACAGAAGTTTTGAGAATTCAAGAGAAGGTCACGGCGAGATGA

Coding sequence (CDS)

ATGAAACCAATGAGCCGGCGACTCATAGGCAGTGGCTTGGTTAAGGGAACCCACCGGAGCCGTAGCGAAAGCGAGTCTTCATGGGGCAATTTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCCCCGAAATGCGTTGAGGCGCAGCAGTTGACTGGACATCTAGGGGGGTCAAGGTCGGCCAGTGAGACGATGGGGGATAAGCTTCATCGTCGAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATAAAGGAGATGAACGGGGCTAAGCGATCTGCCGAAGCTGTGGGATGTAAAAATGCATCGGTAGGGGAGCGTTCCGCCTTAGAGGGAAGCACCTGCGCGAGCAGTGGTGGACGAAGCGGAAGCGAGAATGTCGGCTTGAGTAACGCAAACATTGGTGAGAATCCAATGCCCCGAAAACCTAAGGGTTCCTCCGCAAGGTTCGTCCACGGAGGGGTAAGAAGGGGTAGAGAAAATACCTCGAGCCAATGTTCGAGTACCAGGCGCTACGGCGCTGAAGTAACCCATGCCATACTCCCAGGAAAAGCTCGAACGACCTTCAACAAAAGGGTACCTGTACCCGAAACCGACACAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAAGGGGGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAAGGAAGTTGGTGACCTGATGACAGGGGAGCCGGCGACCGAAGCCCCGGTGAACGGCGGCCGTAACTATAACGGTCCTAAGGTAGCGAAATTCCTTGTCGGTTCCGACCCGCACGAAAGGCGTAACGATCTGGGCACTGTCTCGGAGAGAGGCTCGGTGGAAGGCGAAGAAGGCCCCCTTCCGGGGGGGCCCGAGCCATCAGTGAGATACCACTCTGGAAGAGCTAGAATTCTAACCTTGTGTCAGGACCTACGGGCCAAGGGACAGTCTCAGGCCTCCCAAAAGGTAACGGAGGCGTGCAAAGGTTTCCTCGGGCCAGACGGAGATTGGCCCTCGAGTGCAAAGGCAGAAGGGAGCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGGTGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAAGCTCACATCGACGGGAAGGTTTGGCACCTCGATGTCGGCTCTTCGCCACCTGGGGCTGTAGTATGTTCCAAGGGTTGGGCTGTTCGCCCATTAAAGCGGTACGTGAGCTGGGTTCAGAACGTCGTGAGACAGTTCGGTCCATATCCGGTGTGGGCGTTAGAGCATTGAGAGGACCTTTCCCTAGTACGAGAGGACCGGGAAGGACGCACCTCTGGTGTACCAGTTATCGTGCCCACGTAAGCCCACCCCAAGATGAGTGCTCTCCTATTCCGACTTCCCCAGAGCCTCCGGTAGCACAGCCGAGACAGCGATGGGTTCTCTGCCCCTGCGGGGATGGAGCGACAGAAGTTTTGAGAATTCAAGAGAAGGTCACGGCGAGATGA

Protein sequence

MKPMSRRLIGSGLVKGTHRSRSESESSWGNLSLLMDPNLGDLSMTRMKLGGEMPLEPRASWFSPKCVEAQQLTGHLGGSRSASETMGDKLHRREGNSPDHQLRPLNDRSVIKEMNGAKRSAEAVGCKNASVGERSALEGSTCASSGGRSGSENVGLSNANIGENPMPRKPKGSSARFVHGGVRRGRENTSSQCSSTRRYGAEVTHAILPGKARTTFNKRVPVPETDTGTRQNSPVTSGEGVPPHKGGRSDQARATVYQKHRSPQSHHVWGLTPAQCRKVKEVGDLMTGEPATEAPVNGGRNYNGPKVAKFLVGSDPHERRNDLGTVSERGSVEGEEGPLPGGPEPSVRYHSGRARILTLCQDLRAKGQSQASQKVTEACKGFLGPDGDWPSSAKAEGSLTARPTRRAGTKVGLSDPTVPSGRAVAQRIKSSHRREGLAPRCRLFATWGCSMFQGLGCSPIKAVRELGSERRETVRSISGVGVRALRGPFPSTRGPGRTHLWCTSYRAHVSPPQDECSPIPTSPEPPVAQPRQRWVLCPCGDGATEVLRIQEKVTAR
Homology
[Close]
BLAST of Lsi09G003290 vs. TrEMBL
Match: A0A067L301_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00471 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 5.1e-66
Identity = 136/143 (95.10%), Postives = 136/143 (95.10%), Query Frame = 1 

Query: 86  MGDKLHRREGNSPDHQLRPLNDRSVIKEMNGAKRSAEAVGCKNASVGERSALEGSTCASS 145
           MGDKLHRREGNSPDHQLRPLNDRSVIKEMNGAKRSAEAVGCKNASVGERSALEGST AS 
Sbjct: 1   MGDKLHRREGNSPDHQLRPLNDRSVIKEMNGAKRSAEAVGCKNASVGERSALEGSTRASR 60

Query: 146 GGRSGSENVGLSNANIGENPMPRKPKGSSARFVHGGVRRGRENTSSQCSSTRRYGAEVTH 205
           GGRSGSENVGLSNANIGENPMPRKPKGSSARFV GGVRRGREN SSQCSSTRRYG EVTH
Sbjct: 61  GGRSGSENVGLSNANIGENPMPRKPKGSSARFVRGGVRRGRENASSQCSSTRRYGTEVTH 120

Query: 206 AILPGKARTTFNKRVPVPETDTG 229
           AIL GKARTTFNKRVPVPETD G
Sbjct: 121 AILSGKARTTFNKRVPVPETDIG 143

[Close]
BLAST of Lsi09G003290 vs. TrEMBL
Match: A0A151RN55_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_034569 PE=4 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 2.5e-65
Identity = 134/143 (93.71%), Postives = 135/143 (94.41%), Query Frame = 1 

Query: 86  MGDKLHRREGNSPDHQLRPLNDRSVIKEMNGAKRSAEAVGCKNASVGERSALEGSTCASS 145
           MGDKLHRREGNSPDHQLRPLNDRSVIKEMNGAKRSAEAVGCKN SVGERSALEG TCASS
Sbjct: 1   MGDKLHRREGNSPDHQLRPLNDRSVIKEMNGAKRSAEAVGCKNESVGERSALEGRTCASS 60

Query: 146 GGRSGSENVGLSNANIGENPMPRKPKGSSARFVHGGVRRGRENTSSQCSSTRRYGAEVTH 205
           GGRSGSENVGLSNAN+GENPMPRKPKGSSARFVHGGV RGREN SSQ SSTRRY AEV H
Sbjct: 61  GGRSGSENVGLSNANVGENPMPRKPKGSSARFVHGGVIRGRENASSQSSSTRRYSAEVIH 120

Query: 206 AILPGKARTTFNKRVPVPETDTG 229
           AILPGKARTTFNK VPVPETDTG
Sbjct: 121 AILPGKARTTFNKWVPVPETDTG 143

[Close]
BLAST of Lsi09G003290 vs. TrEMBL
Match: M1DPM3_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400041917 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 3.8e-53
Identity = 120/149 (80.54%), Postives = 126/149 (84.56%), Query Frame = 1 

Query: 86  MGDKLHRREGNSPDHQLRPLNDRSVIKEMNGAKRSAEAVGCKNASVGERSALEGSTCASS 145
           MGDKLHRREGNSPDHQLRPLNDRSVIKE          VG +    GERSALE S  AS 
Sbjct: 1   MGDKLHRREGNSPDHQLRPLNDRSVIKE----------VGVQRQPGGERSALERSLRASG 60

Query: 146 GGRSGSENVGLSNANIGENPMPRKPKGSSARFVHGGVRRGRENTSSQCSSTRRYGAEVTH 205
           GGRSGSENVGLSNANIGENPMPRKPKGSSARFVHGGVRRGREN SSQCS+TRRYGAEVTH
Sbjct: 61  GGRSGSENVGLSNANIGENPMPRKPKGSSARFVHGGVRRGRENASSQCSNTRRYGAEVTH 120

Query: 206 AILPGKARTTFNKRVPVPETDT-GTRQNS 234
           AILPGKARTT +KRVPVPETDT G+ +N+
Sbjct: 121 AILPGKARTTLSKRVPVPETDTAGSVENT 139

[Close]
BLAST of Lsi09G003290 vs. TrEMBL
Match: A0A0D2ZTA2_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 7.1e-44
Identity = 105/136 (77.21%), Postives = 108/136 (79.41%), Query Frame = 1 

Query: 114 MNGAKRSAEAVGCKNASVGERSALEGSTCASSGGRSGSENVGLSNANIGENPMPRKPKGS 173
           MNGAKRSAEAVGC+NASVGERSAL GS  AS GGRSGSENVGLSNANIGENPMPRKPKGS
Sbjct: 1   MNGAKRSAEAVGCQNASVGERSALGGSNRASGGGRSGSENVGLSNANIGENPMPRKPKGS 60

Query: 174 SARFVHGGVRRGRENTSSQCSSTRRYGAEVTHAILPGKARTTFNKRVPVPETDTGTRQNS 233
           SARFVHGGVRRGREN  SQCSSTRRYGAEVTHAILPGKARTTFNKR    +         
Sbjct: 61  SARFVHGGVRRGRENAPSQCSSTRRYGAEVTHAILPGKARTTFNKRCRKVKEVGDLMTGE 120

Query: 234 PVTSGEGVPPHKGGRS 250
           P T      P  GGR+
Sbjct: 121 PATEA----PVNGGRN 132

[Close]
BLAST of Lsi09G003290 vs. TrEMBL
Match: A0A078J910_BRANA (BnaUnng00830D protein OS=Brassica napus GN=BnaUnng00830D PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 7.1e-44
Identity = 105/136 (77.21%), Postives = 108/136 (79.41%), Query Frame = 1 

Query: 114 MNGAKRSAEAVGCKNASVGERSALEGSTCASSGGRSGSENVGLSNANIGENPMPRKPKGS 173
           MNGAKRSAEAVGC+NASVGERSAL GS  AS GGRSGSENVGLSNANIGENPMPRKPKGS
Sbjct: 1   MNGAKRSAEAVGCQNASVGERSALGGSNRASGGGRSGSENVGLSNANIGENPMPRKPKGS 60

Query: 174 SARFVHGGVRRGRENTSSQCSSTRRYGAEVTHAILPGKARTTFNKRVPVPETDTGTRQNS 233
           SARFVHGGVRRGREN  SQCSSTRRYGAEVTHAILPGKARTTFNKR    +         
Sbjct: 61  SARFVHGGVRRGRENAPSQCSSTRRYGAEVTHAILPGKARTTFNKRCRKVKEVGDLMTGE 120

Query: 234 PVTSGEGVPPHKGGRS 250
           P T      P  GGR+
Sbjct: 121 PATEA----PVNGGRN 132

[Close]
BLAST of Lsi09G003290 vs. NCBI nr
Match: gi|643736466|gb|KDP42772.1| (hypothetical protein JCGZ_00471 [Jatropha curcas])

HSP 1 Score: 260.4 bits (664), Expect = 7.3e-66
Identity = 136/143 (95.10%), Postives = 136/143 (95.10%), Query Frame = 1 

Query: 86  MGDKLHRREGNSPDHQLRPLNDRSVIKEMNGAKRSAEAVGCKNASVGERSALEGSTCASS 145
           MGDKLHRREGNSPDHQLRPLNDRSVIKEMNGAKRSAEAVGCKNASVGERSALEGST AS 
Sbjct: 1   MGDKLHRREGNSPDHQLRPLNDRSVIKEMNGAKRSAEAVGCKNASVGERSALEGSTRASR 60

Query: 146 GGRSGSENVGLSNANIGENPMPRKPKGSSARFVHGGVRRGRENTSSQCSSTRRYGAEVTH 205
           GGRSGSENVGLSNANIGENPMPRKPKGSSARFV GGVRRGREN SSQCSSTRRYG EVTH
Sbjct: 61  GGRSGSENVGLSNANIGENPMPRKPKGSSARFVRGGVRRGRENASSQCSSTRRYGTEVTH 120

Query: 206 AILPGKARTTFNKRVPVPETDTG 229
           AIL GKARTTFNKRVPVPETD G
Sbjct: 121 AILSGKARTTFNKRVPVPETDIG 143

[Close]
BLAST of Lsi09G003290 vs. NCBI nr
Match: gi|1012332557|gb|KYP43984.1| (hypothetical protein KK1_034569 [Cajanus cajan])

HSP 1 Score: 258.1 bits (658), Expect = 3.6e-65
Identity = 134/143 (93.71%), Postives = 135/143 (94.41%), Query Frame = 1 

Query: 86  MGDKLHRREGNSPDHQLRPLNDRSVIKEMNGAKRSAEAVGCKNASVGERSALEGSTCASS 145
           MGDKLHRREGNSPDHQLRPLNDRSVIKEMNGAKRSAEAVGCKN SVGERSALEG TCASS
Sbjct: 1   MGDKLHRREGNSPDHQLRPLNDRSVIKEMNGAKRSAEAVGCKNESVGERSALEGRTCASS 60

Query: 146 GGRSGSENVGLSNANIGENPMPRKPKGSSARFVHGGVRRGRENTSSQCSSTRRYGAEVTH 205
           GGRSGSENVGLSNAN+GENPMPRKPKGSSARFVHGGV RGREN SSQ SSTRRY AEV H
Sbjct: 61  GGRSGSENVGLSNANVGENPMPRKPKGSSARFVHGGVIRGRENASSQSSSTRRYSAEVIH 120

Query: 206 AILPGKARTTFNKRVPVPETDTG 229
           AILPGKARTTFNK VPVPETDTG
Sbjct: 121 AILPGKARTTFNKWVPVPETDTG 143

[Close]
BLAST of Lsi09G003290 vs. NCBI nr
Match: gi|674913481|emb|CDY19666.1| (BnaC09g29220D [Brassica napus])

HSP 1 Score: 186.8 bits (473), Expect = 1.0e-43
Identity = 105/136 (77.21%), Postives = 108/136 (79.41%), Query Frame = 1 

Query: 114 MNGAKRSAEAVGCKNASVGERSALEGSTCASSGGRSGSENVGLSNANIGENPMPRKPKGS 173
           MNGAKRSAEAVGC+NASVGERSAL GS  AS GGRSGSENVGLSNANIGENPMPRKPKGS
Sbjct: 1   MNGAKRSAEAVGCQNASVGERSALGGSNRASGGGRSGSENVGLSNANIGENPMPRKPKGS 60

Query: 174 SARFVHGGVRRGRENTSSQCSSTRRYGAEVTHAILPGKARTTFNKRVPVPETDTGTRQNS 233
           SARFVHGGVRRGREN  SQCSSTRRYGAEVTHAILPGKARTTFNKR    +         
Sbjct: 61  SARFVHGGVRRGRENAPSQCSSTRRYGAEVTHAILPGKARTTFNKRCRKVKEVGDLMTGE 120

Query: 234 PVTSGEGVPPHKGGRS 250
           P T      P  GGR+
Sbjct: 121 PATEA----PVNGGRN 132

[Close]
BLAST of Lsi09G003290 vs. NCBI nr
Match: gi|674913470|emb|CDY19655.1| (BnaC09g29110D [Brassica napus])

HSP 1 Score: 186.8 bits (473), Expect = 1.0e-43
Identity = 105/136 (77.21%), Postives = 108/136 (79.41%), Query Frame = 1 

Query: 114 MNGAKRSAEAVGCKNASVGERSALEGSTCASSGGRSGSENVGLSNANIGENPMPRKPKGS 173
           MNGAKRSAEAVGC+NASVGERSAL GS  AS GGRSGSENVGLSNANIGENPMPRKPKGS
Sbjct: 1   MNGAKRSAEAVGCQNASVGERSALGGSNRASGGGRSGSENVGLSNANIGENPMPRKPKGS 60

Query: 174 SARFVHGGVRRGRENTSSQCSSTRRYGAEVTHAILPGKARTTFNKRVPVPETDTGTRQNS 233
           SARFVHGGVRRGREN  SQCSSTRRYGAEVTHAILPGKARTTFNKR    +         
Sbjct: 61  SARFVHGGVRRGRENAPSQCSSTRRYGAEVTHAILPGKARTTFNKRCRKVKEVGDLMTGE 120

Query: 234 PVTSGEGVPPHKGGRS 250
           P T      P  GGR+
Sbjct: 121 PATEA----PVNGGRN 132

[Close]
BLAST of Lsi09G003290 vs. NCBI nr
Match: gi|674871093|emb|CDY63595.1| (BnaUnng00830D [Brassica napus])

HSP 1 Score: 186.8 bits (473), Expect = 1.0e-43
Identity = 105/136 (77.21%), Postives = 108/136 (79.41%), Query Frame = 1 

Query: 114 MNGAKRSAEAVGCKNASVGERSALEGSTCASSGGRSGSENVGLSNANIGENPMPRKPKGS 173
           MNGAKRSAEAVGC+NASVGERSAL GS  AS GGRSGSENVGLSNANIGENPMPRKPKGS
Sbjct: 1   MNGAKRSAEAVGCQNASVGERSALGGSNRASGGGRSGSENVGLSNANIGENPMPRKPKGS 60

Query: 174 SARFVHGGVRRGRENTSSQCSSTRRYGAEVTHAILPGKARTTFNKRVPVPETDTGTRQNS 233
           SARFVHGGVRRGREN  SQCSSTRRYGAEVTHAILPGKARTTFNKR    +         
Sbjct: 61  SARFVHGGVRRGRENAPSQCSSTRRYGAEVTHAILPGKARTTFNKRCRKVKEVGDLMTGE 120

Query: 234 PVTSGEGVPPHKGGRS 250
           P T      P  GGR+
Sbjct: 121 PATEA----PVNGGRN 132

The following BLAST results are available for this feature:
BLAST of Lsi09G003290 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi09G003290 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A067L301_JATCU5.1e-6695.10Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00471 PE=4 SV=1[more]
A0A151RN55_CAJCA2.5e-6593.71Uncharacterized protein OS=Cajanus cajan GN=KK1_034569 PE=4 SV=1[more]
M1DPM3_SOLTU3.8e-5380.54Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400041917 PE=4 SV=1[more]
A0A0D2ZTA2_BRAOL7.1e-4477.21Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1[more]
A0A078J910_BRANA7.1e-4477.21BnaUnng00830D protein OS=Brassica napus GN=BnaUnng00830D PE=4 SV=1[more]
BLAST of Lsi09G003290 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi09G003290 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|643736466|gb|KDP42772.1|7.3e-6695.10hypothetical protein JCGZ_00471 [Jatropha curcas][more]
gi|1012332557|gb|KYP43984.1|3.6e-6593.71hypothetical protein KK1_034569 [Cajanus cajan][more]
gi|674913481|emb|CDY19666.1|1.0e-4377.21BnaC09g29220D [Brassica napus][more]
gi|674913470|emb|CDY19655.1|1.0e-4377.21BnaC09g29110D [Brassica napus][more]
gi|674871093|emb|CDY63595.1|1.0e-4377.21BnaUnng00830D [Brassica napus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0009507 chloroplast
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi09G003290.1Lsi09G003290.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi09G003290Bottle gourd (USVL1VR-Ls)lsilsiB008
Lsi09G003290Cucumber (Gy14) v1cgylsiB411
Lsi09G003290Cucumber (Gy14) v1cgylsiB487
Lsi09G003290Cucurbita maxima (Rimu)cmalsiB267
Lsi09G003290Cucurbita maxima (Rimu)cmalsiB365
Lsi09G003290Cucurbita maxima (Rimu)cmalsiB530
Lsi09G003290Cucurbita moschata (Rifu)cmolsiB255
Lsi09G003290Cucurbita moschata (Rifu)cmolsiB353
Lsi09G003290Cucurbita moschata (Rifu)cmolsiB516
Lsi09G003290Cucurbita pepo (Zucchini)cpelsiB131
Lsi09G003290Cucurbita pepo (Zucchini)cpelsiB582
Lsi09G003290Wild cucumber (PI 183967)cpilsiB155
Lsi09G003290Wild cucumber (PI 183967)cpilsiB322
Lsi09G003290Cucumber (Chinese Long) v2culsiB156
Lsi09G003290Cucumber (Chinese Long) v2culsiB322
Lsi09G003290Melon (DHL92) v3.5.1lsimeB012
Lsi09G003290Melon (DHL92) v3.5.1lsimeB036
Lsi09G003290Watermelon (Charleston Gray)lsiwcgB008
Lsi09G003290Watermelon (Charleston Gray)lsiwcgB023
Lsi09G003290Watermelon (97103) v1lsiwmB024
Lsi09G003290Watermelon (97103) v1lsiwmB027
Lsi09G003290Cucumber (Gy14) v2cgyblsiB141
Lsi09G003290Cucumber (Gy14) v2cgyblsiB294
Lsi09G003290Melon (DHL92) v3.6.1lsimedB012
Lsi09G003290Melon (DHL92) v3.6.1lsimedB036
Lsi09G003290Silver-seed gourdcarlsiB836
Lsi09G003290Silver-seed gourdcarlsiB851
Lsi09G003290Cucumber (Chinese Long) v3cuclsiB171
Lsi09G003290Cucumber (Chinese Long) v3cuclsiB345
Lsi09G003290Watermelon (97103) v2lsiwmbB007
Lsi09G003290Wax gourdlsiwgoB010