Lsi09G003280 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi09G003280
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionOryza nivara chloroplast DNA, complete genome
Locationchr09 : 3445178 .. 3446325 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGGTAGTTGGAGTCGGCGGCTCTCTTAGGGTTCCCTCATCTGGGATCCCTGGGGAAGAGGATCAAGTTGGCCCTTGCGAACAGCTTGATGCACTATCTCCCTTCAACCCTTTGAGCGAAATGCGGCAAAAGGAAGGAAAATCCATGGACCGACCCCATCGTCTCCACCCCGTAGGAACTACGAGATCACCCCAAGGACGCCTTCGGTATCCAGGGGTCGCGGACCGACCATAGAACCCTGTTCAATAAGTGGAACGCATTAGCTGTCCGCTCTCCGGTTGGGCAGTAAGGGTCGGAGAAGGGCAATCACTCATTCTTAAAACCAGCATTCTTAAGACCAAAGAGGCGGGCGGAAAAGGGGGGAAAGCTCTCCGTTCCTGGTTCTCCTGTAGCTGGATTCTCCGGAACCACAAGAATCCTTAGTTAGAATGGGATTCCAACTCAGTACCTTTTGAGATTTTGAGAAGAGTTGCTCTTTGGAGAGCACAGTACGATGAAAGTTGTAAGCTGTGTTCGGGGGGGAGTTATTGTCTATCGTTGGCCTCTATGGTAGAATCAGTCGGGGGCCTGAGAGGCGGTGGTTTACCCTGTGGCGGATGTCAGCGGTTCGAGTCCGCTTATCTCCAACTCGTGAACTTAGCCGATACAAAGCTATATGATAGCACTCCATTTTTCCGATTCGGCAGTTCGATCTATGATTTATCATTCATGGACGTTGATAAGATCCTTCCATTTAGCAGCACCTTAGGATGGCATAGCCTTAAAGTTAAGGGCGAGGTTCAAACGAAGAAAGGCTTACGGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGGGAGTTGAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTCAACCTTTCAAACTGCTGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAGCCTAAACCGTGAAAACGGGGTTGTGGGAGAGCAATACAAGCGTCGTGCTGCTAGGCGAAGCGGTGGAGTGCTGCACCCTAGATGGCGAGAGTCCAGTAGCCGAAAGCATCACTAG

mRNA sequence

ATGGACGTTGGAGTCGGCGGCTCTCTTAGGGTTCCCTCATCTGGGATCCCTGGGGAAGAGGATCAAGTTGGCCCTTGCGAACAGCTTGATGCACTATCTCCCTTCAACCCTTTGAGCGAAATGCGGCAAAAGGAAGGAAAATCCATGGACCGACCCCATCGTCTCCACCCCGTAGGAACTACGAGATCACCCCAAGGACGCCTTCGACCAAAGAGGCGGGCGGAAAAGGGGGGAAAGCTCTCCGTTCCTGGTTCTCCTGTAGCTGGATTCTCCGGAACCACAAGAATCCTTATACCTTTTGAGATTTTGAGAAGAGTTGCTCTTTGGAGAGCACAGTACGATGAAAGTTGTAAGCTGTGTTCGGGGGGGAGTTATTGTCTATCGTTGGCCTCTATGGTAGAATCAGTCGGGGGCCTGAGAGGCGGTGGTTTACCCTGTGGCGGATGTCAGCGGTTCGAGTCCGCTTATCTCCAACTCGTGAACTTAGCCGATACAAAGCTATATGATAGCACTCCATTTTTCCGATTCGGCAGTTCGATCTATGATTTATCATTCATGGACGTTGATAAGATCCTTCCATTTAGCAGCACCTTAGGATGGCATAGCCTTAAAGTTAAGGGCGAGGTTCAAACGAAGAAAGGCTTACGGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGGGAGTTGAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTCAACCTTTCAAACTGCTGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCTAGCGGCGAGCGAAATGGGAGCAGCCTAAACCGTGAAAACGGGGTTGTGGGAGAGCAATACAAGCGTCGTGCTGCTAGGCGAAGCGGTGGAGTGCTGCACCCTAGATGGCGAGAGTCCAGTAGCCGAAAGCATCACTAG

Coding sequence (CDS)

ATGGACGTTGGAGTCGGCGGCTCTCTTAGGGTTCCCTCATCTGGGATCCCTGGGGAAGAGGATCAAGTTGGCCCTTGCGAACAGCTTGATGCACTATCTCCCTTCAACCCTTTGAGCGAAATGCGGCAAAAGGAAGGAAAATCCATGGACCGACCCCATCGTCTCCACCCCGTAGGAACTACGAGATCACCCCAAGGACGCCTTCGACCAAAGAGGCGGGCGGAAAAGGGGGGAAAGCTCTCCGTTCCTGGTTCTCCTGTAGCTGGATTCTCCGGAACCACAAGAATCCTTATACCTTTTGAGATTTTGAGAAGAGTTGCTCTTTGGAGAGCACAGTACGATGAAAGTTGTAAGCTGTGTTCGGGGGGGAGTTATTGTCTATCGTTGGCCTCTATGGTAGAATCAGTCGGGGGCCTGAGAGGCGGTGGTTTACCCTGTGGCGGATGTCAGCGGTTCGAGTCCGCTTATCTCCAACTCGTGAACTTAGCCGATACAAAGCTATATGATAGCACTCCATTTTTCCGATTCGGCAGTTCGATCTATGATTTATCATTCATGGACGTTGATAAGATCCTTCCATTTAGCAGCACCTTAGGATGGCATAGCCTTAAAGTTAAGGGCGAGGTTCAAACGAAGAAAGGCTTACGGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGGGAGTTGAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTCAACCTTTCAAACTGCTGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCTAGCGGCGAGCGAAATGGGAGCAGCCTAAACCGTGAAAACGGGGTTGTGGGAGAGCAATACAAGCGTCGTGCTGCTAGGCGAAGCGGTGGAGTGCTGCACCCTAGATGGCGAGAGTCCAGTAGCCGAAAGCATCACTAG

Protein sequence

MDVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRLHPVGTTRSPQGRLRPKRRAEKGGKLSVPGSPVAGFSGTTRILIPFEILRRVALWRAQYDESCKLCSGGSYCLSLASMVESVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTPFFRFGSSIYDLSFMDVDKILPFSSTLGWHSLKVKGEVQTKKGLRWIPRHPETRKGVVSDEMLRGVENKRRSGDSRIGQPFKLLLNPWAGKRQPGELKHLSSQRKRKQKRFPSGERNGSSLNRENGVVGEQYKRRAARRSGGVLHPRWRESSSRKHH
BLAST of Lsi09G003280 vs. TrEMBL
Match: S8D531_9LAMI (Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_00242 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 2.0e-54
Identity = 108/131 (82.44%), Postives = 115/131 (87.79%), Query Frame = 1

Query: 137 GGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTPFFRFGSSIYDLSFMDVDKILPFSS 196
           GG+RGGGLPCGGCQRFESAYLQL+NLADTKLY ST FFRFG SIYD SFMDVDKI  FSS
Sbjct: 4   GGMRGGGLPCGGCQRFESAYLQLMNLADTKLYHSTQFFRFGGSIYDFSFMDVDKIHLFSS 63

Query: 197 TLGWHSLKV-----KGEVQTKKGLRWIPRHPETRKGVVSDEMLRGVENKRRSGDSRIGQP 256
           TLGWHSL +     KGEVQT+KGLRW PRHPETRKGVV DEMLRGVENK+RS DSRIGQP
Sbjct: 64  TLGWHSLILSGKGDKGEVQTRKGLRWRPRHPETRKGVVIDEMLRGVENKQRSVDSRIGQP 123

Query: 257 FKLLLNPWAGK 263
           F+LLLNPWA +
Sbjct: 124 FELLLNPWAAR 134

BLAST of Lsi09G003280 vs. TrEMBL
Match: A0A124SFL0_CYNCS (Uncharacterized protein (Fragment) OS=Cynara cardunculus var. scolymus GN=Ccrd_018134 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.4e-44
Identity = 90/117 (76.92%), Postives = 97/117 (82.91%), Query Frame = 1

Query: 89  GFSGTTRILIPFEILRRVALWRAQYDESCKLCSGGSYCLSLASMVESVGGLRGGGLPCGG 148
           G+ G   ++I  EILRRV LW  QYDESCKLCSG SYCLS ASMVESVG L+GGGLP  G
Sbjct: 35  GYGGHNSMMIASEILRRVTLWPPQYDESCKLCSGESYCLSFASMVESVGDLKGGGLPYDG 94

Query: 149 CQRFESAYLQLVNLADTKLYDSTPFFRFGSSIYDLSFMDVDKILPFSSTLGWHSLKV 206
           CQRFESAYLQLVNLADTKLY ST FFRFG SIYDL FMD+DKI PFSSTL WH+LK+
Sbjct: 95  CQRFESAYLQLVNLADTKLYGSTQFFRFGGSIYDLLFMDIDKIHPFSSTLEWHNLKI 151

BLAST of Lsi09G003280 vs. TrEMBL
Match: A0A162AGR1_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_001522 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 4.6e-43
Identity = 89/98 (90.82%), Postives = 92/98 (93.88%), Query Frame = 1

Query: 186 MDVDKILPFSSTLGWHSLKVKGEVQTKKGLRWIPRHPETRKGVVSDEMLRGVENKRRSGD 245
           MDVDKI PFSSTLGW SLKVKGEV+ +K LRWIPRHPE R+GVVSDEMLRGVENKRRS D
Sbjct: 1   MDVDKIHPFSSTLGWPSLKVKGEVKMRKALRWIPRHPEMRRGVVSDEMLRGVENKRRSRD 60

Query: 246 SRIGQPFKLLLNPWAGKRQPGELKHLSSQRKRKQKRFP 284
           SRIGQPFKLLLNPWAGKRQPGELKHLSSQRKRKQKRFP
Sbjct: 61  SRIGQPFKLLLNPWAGKRQPGELKHLSSQRKRKQKRFP 98

BLAST of Lsi09G003280 vs. TrEMBL
Match: A0A072TVZ8_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_0002s0250 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 2.3e-42
Identity = 91/103 (88.35%), Postives = 94/103 (91.26%), Query Frame = 1

Query: 181 YDLSFMDVDKILPFSSTLGWHSLKVKGEVQTKKGLRWIPRHPETRKGVVSDEMLRGVENK 240
           Y LSFMDVDKILP SSTLGW  L+VKGEVQT+KGL WIPRHPETRKGVVSDEMLRGVENK
Sbjct: 111 YALSFMDVDKILPSSSTLGWPRLQVKGEVQTRKGLWWIPRHPETRKGVVSDEMLRGVENK 170

Query: 241 RRSGDSRIGQPFKLLLNPWAGKRQPGELKHLSSQRKRKQKRFP 284
            RS DSRIGQPF+LLLN  AGKRQPGELKHLSSQRKRKQKRFP
Sbjct: 171 HRSEDSRIGQPFELLLNSRAGKRQPGELKHLSSQRKRKQKRFP 213

BLAST of Lsi09G003280 vs. TrEMBL
Match: A0A118JS95_CYNCS (Uncharacterized protein (Fragment) OS=Cynara cardunculus var. scolymus GN=Ccrd_024790 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 1.9e-41
Identity = 88/109 (80.73%), Postives = 92/109 (84.40%), Query Frame = 1

Query: 101 EILRRVALWRAQYDESCKLCSGGSYCLSLASMVESVGGLRGGGLPCGGCQRFESAYLQLV 160
           EILRRVAL RAQYDESCKLCSGG+            G LRGGGLPCGGCQRFESAYLQLV
Sbjct: 21  EILRRVALRRAQYDESCKLCSGGNQS----------GDLRGGGLPCGGCQRFESAYLQLV 80

Query: 161 NLADTKLYDSTPFFRFGSSIYDLSFMDVDKILPFSSTLGWHSLKVKGEV 210
           NLADTKLYDST FFRFG SIYDLSFMDVDKI PFS+TLGWHSLK+KGE+
Sbjct: 81  NLADTKLYDSTQFFRFGGSIYDLSFMDVDKIHPFSNTLGWHSLKIKGEI 119

BLAST of Lsi09G003280 vs. NCBI nr
Match: gi|527209916|gb|EPS74525.1| (hypothetical protein M569_00242, partial [Genlisea aurea])

HSP 1 Score: 221.1 bits (562), Expect = 2.9e-54
Identity = 108/131 (82.44%), Postives = 115/131 (87.79%), Query Frame = 1

Query: 137 GGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTPFFRFGSSIYDLSFMDVDKILPFSS 196
           GG+RGGGLPCGGCQRFESAYLQL+NLADTKLY ST FFRFG SIYD SFMDVDKI  FSS
Sbjct: 4   GGMRGGGLPCGGCQRFESAYLQLMNLADTKLYHSTQFFRFGGSIYDFSFMDVDKIHLFSS 63

Query: 197 TLGWHSLKV-----KGEVQTKKGLRWIPRHPETRKGVVSDEMLRGVENKRRSGDSRIGQP 256
           TLGWHSL +     KGEVQT+KGLRW PRHPETRKGVV DEMLRGVENK+RS DSRIGQP
Sbjct: 64  TLGWHSLILSGKGDKGEVQTRKGLRWRPRHPETRKGVVIDEMLRGVENKQRSVDSRIGQP 123

Query: 257 FKLLLNPWAGK 263
           F+LLLNPWA +
Sbjct: 124 FELLLNPWAAR 134

BLAST of Lsi09G003280 vs. NCBI nr
Match: gi|976918390|gb|KVI03573.1| (hypothetical protein Ccrd_018134, partial [Cynara cardunculus var. scolymus])

HSP 1 Score: 188.3 bits (477), Expect = 2.1e-44
Identity = 90/117 (76.92%), Postives = 97/117 (82.91%), Query Frame = 1

Query: 89  GFSGTTRILIPFEILRRVALWRAQYDESCKLCSGGSYCLSLASMVESVGGLRGGGLPCGG 148
           G+ G   ++I  EILRRV LW  QYDESCKLCSG SYCLS ASMVESVG L+GGGLP  G
Sbjct: 35  GYGGHNSMMIASEILRRVTLWPPQYDESCKLCSGESYCLSFASMVESVGDLKGGGLPYDG 94

Query: 149 CQRFESAYLQLVNLADTKLYDSTPFFRFGSSIYDLSFMDVDKILPFSSTLGWHSLKV 206
           CQRFESAYLQLVNLADTKLY ST FFRFG SIYDL FMD+DKI PFSSTL WH+LK+
Sbjct: 95  CQRFESAYLQLVNLADTKLYGSTQFFRFGGSIYDLLFMDIDKIHPFSSTLEWHNLKI 151

BLAST of Lsi09G003280 vs. NCBI nr
Match: gi|1021051088|gb|KZN08866.1| (hypothetical protein DCAR_001522 [Daucus carota subsp. sativus])

HSP 1 Score: 183.3 bits (464), Expect = 6.7e-43
Identity = 89/98 (90.82%), Postives = 92/98 (93.88%), Query Frame = 1

Query: 186 MDVDKILPFSSTLGWHSLKVKGEVQTKKGLRWIPRHPETRKGVVSDEMLRGVENKRRSGD 245
           MDVDKI PFSSTLGW SLKVKGEV+ +K LRWIPRHPE R+GVVSDEMLRGVENKRRS D
Sbjct: 1   MDVDKIHPFSSTLGWPSLKVKGEVKMRKALRWIPRHPEMRRGVVSDEMLRGVENKRRSRD 60

Query: 246 SRIGQPFKLLLNPWAGKRQPGELKHLSSQRKRKQKRFP 284
           SRIGQPFKLLLNPWAGKRQPGELKHLSSQRKRKQKRFP
Sbjct: 61  SRIGQPFKLLLNPWAGKRQPGELKHLSSQRKRKQKRFP 98

BLAST of Lsi09G003280 vs. NCBI nr
Match: gi|922328555|ref|XP_013443670.1| (hypothetical protein MTR_0002s0250 [Medicago truncatula])

HSP 1 Score: 181.0 bits (458), Expect = 3.3e-42
Identity = 91/103 (88.35%), Postives = 94/103 (91.26%), Query Frame = 1

Query: 181 YDLSFMDVDKILPFSSTLGWHSLKVKGEVQTKKGLRWIPRHPETRKGVVSDEMLRGVENK 240
           Y LSFMDVDKILP SSTLGW  L+VKGEVQT+KGL WIPRHPETRKGVVSDEMLRGVENK
Sbjct: 111 YALSFMDVDKILPSSSTLGWPRLQVKGEVQTRKGLWWIPRHPETRKGVVSDEMLRGVENK 170

Query: 241 RRSGDSRIGQPFKLLLNPWAGKRQPGELKHLSSQRKRKQKRFP 284
            RS DSRIGQPF+LLLN  AGKRQPGELKHLSSQRKRKQKRFP
Sbjct: 171 HRSEDSRIGQPFELLLNSRAGKRQPGELKHLSSQRKRKQKRFP 213

BLAST of Lsi09G003280 vs. NCBI nr
Match: gi|976899324|gb|KVH87896.1| (hypothetical protein Ccrd_024790, partial [Cynara cardunculus var. scolymus])

HSP 1 Score: 177.9 bits (450), Expect = 2.8e-41
Identity = 88/109 (80.73%), Postives = 92/109 (84.40%), Query Frame = 1

Query: 101 EILRRVALWRAQYDESCKLCSGGSYCLSLASMVESVGGLRGGGLPCGGCQRFESAYLQLV 160
           EILRRVAL RAQYDESCKLCSGG+            G LRGGGLPCGGCQRFESAYLQLV
Sbjct: 21  EILRRVALRRAQYDESCKLCSGGNQS----------GDLRGGGLPCGGCQRFESAYLQLV 80

Query: 161 NLADTKLYDSTPFFRFGSSIYDLSFMDVDKILPFSSTLGWHSLKVKGEV 210
           NLADTKLYDST FFRFG SIYDLSFMDVDKI PFS+TLGWHSLK+KGE+
Sbjct: 81  NLADTKLYDSTQFFRFGGSIYDLSFMDVDKIHPFSNTLGWHSLKIKGEI 119

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
S8D531_9LAMI2.0e-5482.44Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_00242 PE=4 SV=1[more]
A0A124SFL0_CYNCS1.4e-4476.92Uncharacterized protein (Fragment) OS=Cynara cardunculus var. scolymus GN=Ccrd_0... [more]
A0A162AGR1_DAUCA4.6e-4390.82Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_001522 PE=4 SV=1[more]
A0A072TVZ8_MEDTR2.3e-4288.35Uncharacterized protein OS=Medicago truncatula GN=MTR_0002s0250 PE=4 SV=1[more]
A0A118JS95_CYNCS1.9e-4180.73Uncharacterized protein (Fragment) OS=Cynara cardunculus var. scolymus GN=Ccrd_0... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|527209916|gb|EPS74525.1|2.9e-5482.44hypothetical protein M569_00242, partial [Genlisea aurea][more]
gi|976918390|gb|KVI03573.1|2.1e-4476.92hypothetical protein Ccrd_018134, partial [Cynara cardunculus var. scolymus][more]
gi|1021051088|gb|KZN08866.1|6.7e-4390.82hypothetical protein DCAR_001522 [Daucus carota subsp. sativus][more]
gi|922328555|ref|XP_013443670.1|3.3e-4288.35hypothetical protein MTR_0002s0250 [Medicago truncatula][more]
gi|976899324|gb|KVH87896.1|2.8e-4180.73hypothetical protein Ccrd_024790, partial [Cynara cardunculus var. scolymus][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005739 mitochondrion
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi09G003280.1Lsi09G003280.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None