Lsi09G003280 (gene) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGACGGTAGTTGGAGTCGGCGGCTCTCTTAGGGTTCCCTCATCTGGGATCCCTGGGGAAGAGGATCAAGTTGGCCCTTGCGAACAGCTTGATGCACTATCTCCCTTCAACCCTTTGAGCGAAATGCGGCAAAAGGAAGGAAAATCCATGGACCGACCCCATCGTCTCCACCCCGTAGGAACTACGAGATCACCCCAAGGACGCCTTCGGTATCCAGGGGTCGCGGACCGACCATAGAACCCTGTTCAATAAGTGGAACGCATTAGCTGTCCGCTCTCCGGTTGGGCAGTAAGGGTCGGAGAAGGGCAATCACTCATTCTTAAAACCAGCATTCTTAAGACCAAAGAGGCGGGCGGAAAAGGGGGGAAAGCTCTCCGTTCCTGGTTCTCCTGTAGCTGGATTCTCCGGAACCACAAGAATCCTTAGTTAGAATGGGATTCCAACTCAGTACCTTTTGAGATTTTGAGAAGAGTTGCTCTTTGGAGAGCACAGTACGATGAAAGTTGTAAGCTGTGTTCGGGGGGGAGTTATTGTCTATCGTTGGCCTCTATGGTAGAATCAGTCGGGGGCCTGAGAGGCGGTGGTTTACCCTGTGGCGGATGTCAGCGGTTCGAGTCCGCTTATCTCCAACTCGTGAACTTAGCCGATACAAAGCTATATGATAGCACTCCATTTTTCCGATTCGGCAGTTCGATCTATGATTTATCATTCATGGACGTTGATAAGATCCTTCCATTTAGCAGCACCTTAGGATGGCATAGCCTTAAAGTTAAGGGCGAGGTTCAAACGAAGAAAGGCTTACGGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGGGAGTTGAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTCAACCTTTCAAACTGCTGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAGCCTAAACCGTGAAAACGGGGTTGTGGGAGAGCAATACAAGCGTCGTGCTGCTAGGCGAAGCGGTGGAGTGCTGCACCCTAGATGGCGAGAGTCCAGTAGCCGAAAGCATCACTAG ATGGACGTTGGAGTCGGCGGCTCTCTTAGGGTTCCCTCATCTGGGATCCCTGGGGAAGAGGATCAAGTTGGCCCTTGCGAACAGCTTGATGCACTATCTCCCTTCAACCCTTTGAGCGAAATGCGGCAAAAGGAAGGAAAATCCATGGACCGACCCCATCGTCTCCACCCCGTAGGAACTACGAGATCACCCCAAGGACGCCTTCGACCAAAGAGGCGGGCGGAAAAGGGGGGAAAGCTCTCCGTTCCTGGTTCTCCTGTAGCTGGATTCTCCGGAACCACAAGAATCCTTATACCTTTTGAGATTTTGAGAAGAGTTGCTCTTTGGAGAGCACAGTACGATGAAAGTTGTAAGCTGTGTTCGGGGGGGAGTTATTGTCTATCGTTGGCCTCTATGGTAGAATCAGTCGGGGGCCTGAGAGGCGGTGGTTTACCCTGTGGCGGATGTCAGCGGTTCGAGTCCGCTTATCTCCAACTCGTGAACTTAGCCGATACAAAGCTATATGATAGCACTCCATTTTTCCGATTCGGCAGTTCGATCTATGATTTATCATTCATGGACGTTGATAAGATCCTTCCATTTAGCAGCACCTTAGGATGGCATAGCCTTAAAGTTAAGGGCGAGGTTCAAACGAAGAAAGGCTTACGGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGGGAGTTGAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTCAACCTTTCAAACTGCTGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCTAGCGGCGAGCGAAATGGGAGCAGCCTAAACCGTGAAAACGGGGTTGTGGGAGAGCAATACAAGCGTCGTGCTGCTAGGCGAAGCGGTGGAGTGCTGCACCCTAGATGGCGAGAGTCCAGTAGCCGAAAGCATCACTAG ATGGACGTTGGAGTCGGCGGCTCTCTTAGGGTTCCCTCATCTGGGATCCCTGGGGAAGAGGATCAAGTTGGCCCTTGCGAACAGCTTGATGCACTATCTCCCTTCAACCCTTTGAGCGAAATGCGGCAAAAGGAAGGAAAATCCATGGACCGACCCCATCGTCTCCACCCCGTAGGAACTACGAGATCACCCCAAGGACGCCTTCGACCAAAGAGGCGGGCGGAAAAGGGGGGAAAGCTCTCCGTTCCTGGTTCTCCTGTAGCTGGATTCTCCGGAACCACAAGAATCCTTATACCTTTTGAGATTTTGAGAAGAGTTGCTCTTTGGAGAGCACAGTACGATGAAAGTTGTAAGCTGTGTTCGGGGGGGAGTTATTGTCTATCGTTGGCCTCTATGGTAGAATCAGTCGGGGGCCTGAGAGGCGGTGGTTTACCCTGTGGCGGATGTCAGCGGTTCGAGTCCGCTTATCTCCAACTCGTGAACTTAGCCGATACAAAGCTATATGATAGCACTCCATTTTTCCGATTCGGCAGTTCGATCTATGATTTATCATTCATGGACGTTGATAAGATCCTTCCATTTAGCAGCACCTTAGGATGGCATAGCCTTAAAGTTAAGGGCGAGGTTCAAACGAAGAAAGGCTTACGGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGGGAGTTGAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTCAACCTTTCAAACTGCTGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCTAGCGGCGAGCGAAATGGGAGCAGCCTAAACCGTGAAAACGGGGTTGTGGGAGAGCAATACAAGCGTCGTGCTGCTAGGCGAAGCGGTGGAGTGCTGCACCCTAGATGGCGAGAGTCCAGTAGCCGAAAGCATCACTAG MDVGVGGSLRVPSSGIPGEEDQVGPCEQLDALSPFNPLSEMRQKEGKSMDRPHRLHPVGTTRSPQGRLRPKRRAEKGGKLSVPGSPVAGFSGTTRILIPFEILRRVALWRAQYDESCKLCSGGSYCLSLASMVESVGGLRGGGLPCGGCQRFESAYLQLVNLADTKLYDSTPFFRFGSSIYDLSFMDVDKILPFSSTLGWHSLKVKGEVQTKKGLRWIPRHPETRKGVVSDEMLRGVENKRRSGDSRIGQPFKLLLNPWAGKRQPGELKHLSSQRKRKQKRFPSGERNGSSLNRENGVVGEQYKRRAARRSGGVLHPRWRESSSRKHH
BLAST of Lsi09G003280 vs. TrEMBL
Match: S8D531_9LAMI (Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_00242 PE=4 SV=1) HSP 1 Score: 221.1 bits (562), Expect = 2.0e-54 Identity = 108/131 (82.44%), Postives = 115/131 (87.79%), Query Frame = 1
BLAST of Lsi09G003280 vs. TrEMBL
Match: A0A124SFL0_CYNCS (Uncharacterized protein (Fragment) OS=Cynara cardunculus var. scolymus GN=Ccrd_018134 PE=4 SV=1) HSP 1 Score: 188.3 bits (477), Expect = 1.4e-44 Identity = 90/117 (76.92%), Postives = 97/117 (82.91%), Query Frame = 1
BLAST of Lsi09G003280 vs. TrEMBL
Match: A0A162AGR1_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_001522 PE=4 SV=1) HSP 1 Score: 183.3 bits (464), Expect = 4.6e-43 Identity = 89/98 (90.82%), Postives = 92/98 (93.88%), Query Frame = 1
BLAST of Lsi09G003280 vs. TrEMBL
Match: A0A072TVZ8_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_0002s0250 PE=4 SV=1) HSP 1 Score: 181.0 bits (458), Expect = 2.3e-42 Identity = 91/103 (88.35%), Postives = 94/103 (91.26%), Query Frame = 1
BLAST of Lsi09G003280 vs. TrEMBL
Match: A0A118JS95_CYNCS (Uncharacterized protein (Fragment) OS=Cynara cardunculus var. scolymus GN=Ccrd_024790 PE=4 SV=1) HSP 1 Score: 177.9 bits (450), Expect = 1.9e-41 Identity = 88/109 (80.73%), Postives = 92/109 (84.40%), Query Frame = 1
BLAST of Lsi09G003280 vs. NCBI nr
Match: gi|527209916|gb|EPS74525.1| (hypothetical protein M569_00242, partial [Genlisea aurea]) HSP 1 Score: 221.1 bits (562), Expect = 2.9e-54 Identity = 108/131 (82.44%), Postives = 115/131 (87.79%), Query Frame = 1
BLAST of Lsi09G003280 vs. NCBI nr
Match: gi|976918390|gb|KVI03573.1| (hypothetical protein Ccrd_018134, partial [Cynara cardunculus var. scolymus]) HSP 1 Score: 188.3 bits (477), Expect = 2.1e-44 Identity = 90/117 (76.92%), Postives = 97/117 (82.91%), Query Frame = 1
BLAST of Lsi09G003280 vs. NCBI nr
Match: gi|1021051088|gb|KZN08866.1| (hypothetical protein DCAR_001522 [Daucus carota subsp. sativus]) HSP 1 Score: 183.3 bits (464), Expect = 6.7e-43 Identity = 89/98 (90.82%), Postives = 92/98 (93.88%), Query Frame = 1
BLAST of Lsi09G003280 vs. NCBI nr
Match: gi|922328555|ref|XP_013443670.1| (hypothetical protein MTR_0002s0250 [Medicago truncatula]) HSP 1 Score: 181.0 bits (458), Expect = 3.3e-42 Identity = 91/103 (88.35%), Postives = 94/103 (91.26%), Query Frame = 1
BLAST of Lsi09G003280 vs. NCBI nr
Match: gi|976899324|gb|KVH87896.1| (hypothetical protein Ccrd_024790, partial [Cynara cardunculus var. scolymus]) HSP 1 Score: 177.9 bits (450), Expect = 2.8e-41 Identity = 88/109 (80.73%), Postives = 92/109 (84.40%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |