Lsi09G002690 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi09G002690
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr09 : 2810295 .. 2813630 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGAGGTATTGGAATCATCTCTTTTTTTTTTTTTTTTTTTCCTTCTCTCTACACTTGTACTTATTTTTAAATAAATCTCATTTTATTTGCAAACAATTATTTTTTTAAAATTTTCTATTTTTAAAATTAGGTAATTATTTTAAAAGACAAAATTATTAGAAATATTCTTAAATGTAGCAAAATGTCAATGTCCATCAGTGATAGACTGCGATAGACCGTGATAGACATCTATCAGTATCTATCAATAATAAACAGACGATATTATTCTATCAGTGTCTATCACAATCTTTCACTAATGAACAGTGAAATTTTATTATATTTATAAATATTTTTCTCATTTTATTATATTTGAAAATAATCCTTTAAAATTTCTGTTTATTATTCTTAAATTGTCTGTTATGATTGTCACGTTTCTTGAAAAGATATTTGAATTCTTAGTCATTCTGAGAGGAAAAACAACTTTTTTAAAAAAGTTAAGGTTTGGTTTGGTTTTTTGTTTTTGAAAATTTTGCTTGTTTTCTCACAATTTTTTACTCATAGAGGATTGAATTCTTTAACCAATATTTTTTTTTTAAAACTACTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTAGTTTTCAAAATTTGCTTTTGATTTTTGGAAATACTTTTAAAATGTAGATAAGAAAATATATAAACAATAGATGAAATTGGTGTTTATAGGCCTAATTTTCAAAAACCAAATGGTTACCAAACATGACATACATTTTTTAGTTTTTAAATTTAGGCTTGGCTTTTTGAAAACATTGTCAAAAAGTATATAACAAAACAAAGAAACATATACGTGGGAGTAGTGTTTATAAGCTTACTTTCTGGAAAAAAAAATCAAATGGTTATCCAACAAAACCTAATATTTTAAAAATGTCAATATTAGTAAATCAAAATTTAGGTTAAATTACAAATTTAGACCATGAACCTTGATGTGTGACTATTTGATCCCTTAACTTTCAAAACCATAAGTTTAGCTCCTTAACTTTTGATTTTTCTTAAGAAAAATTATGGATCTAATAGACAAAATATTGAAAGTTTAGAGTTTCCATTAGAAAGAAAATTCAAATTTATATCTAATATATCAATTAAGTTACAAAAATCAAATTTGTCAATAACTTATATAACTCACAAAGTTGAAAGTTTGGATACCTATTGTATATTTTTAAAATTTCAAGCACCAAATAGACACAAATATCAAAATTTAGAAACTAAACTAAAAATTTAACCAAACAAAACTTATTCTAGTTTGATCATAAATTTTCAAAATTTCCATTATAATATGCTTATATTGGTTCTTAATTTATTTATTTTTTTTTTTGAGAAATTGATAACGTAGTTTCATGTAAGAAAATTAATGCGAGCATGTATCCAAACTACATAAAACTGAATATTGGGTAAACACTTATAAAAAAATAGGTAAACAAATTTTATGTGGTAAAATAATATGCAAAAGACCAATACGACATCGTTTTAGTTGAGGAGCTAAAATAGTTATTTTAAAGGAAAATTTTTAAAAATAAAAAAAAATAAAGAAAACTGTTTACATAAAATAGCAAAATTTTTGGATAGTTGTGATAGACACTAATAGAAGTCTATCAAGGTCTATCAGTGATAGAAATGATAGAAGTCTATCACTTATAGATGTTGATAGAAGTCTATTAATGTCTATCAGTATTTTTTTTGCTATTTTTTATAAATAATTTGACATTTTTTCTATGTATGAAAATTTCACCTAGTTTTAAATGTTTAAAGGGAAAAAATGGTTGACAGACCAAAATCAAGTTTACAAGCCAAATGAAATAATCCTCAAAACTAATTTTATTTGGCAAAATAATTTTTGACAAACCAAAACATTAATTACCTCTTTTATGGTAGGTTTTGAAATTCTCACTTCTAAGTTAGATTTTTATTACTCTAGAAAAAAAATCAATATAGACATTTTTAATGTTAACAAGTTTGTTTTTAATTAATTACAGTTGCAATTCTACTTTCTCAATGTACATTCATTAAAGCTTTGCTTGATTTTTGTCTTTGGTACAACTTCATATTTGATGAACACCAATTAATATATACATTATTCAACCACTATTCCATTCATTTGAATCTGATCAACTTCATCAAGCTTCTTAGGTCTCTTGTATTTCTTCAACATCAAAGAACTGCAGACCACACTAACAGAAGAAGCTGCCATGGCGGCTCCCGCGATCCACGGTGGTAACCGAAACCGAGTCGAAGGGAACACGACGCCCGCTGCGATGGGTATGGCAAGAAGATTATAACCTAAAGCCCAAATGTAATTCAAACGAATTCTAGAAAAGGTTTTCCTTGAAAGATGAATGGCAGTTATAACATCTTGCAAGTCATTTTTCATTAGAACAATGTCTGCTGCCTCAATGGCAATGTCCGTGCCGGCTCCGATCGCCATCCCGACATCCGCTGCTACTAGGGCAGGCGAGTCATTGATCCCGTCTCCGACCATCGCCACC

mRNA sequence

ATGGATGAGACCACACTAACAGAAGAAGCTGCCATGGCGGCTCCCGCGATCCACGGTGGTAACCGAAACCGAGTCGAAGGGAACACGACGCCCGCTGCGATGGTTATAACATCTTGCAAGTCATTTTTCATTAGAACAATGTCTGCTGCCTCAATGGCAATGTCCGTGCCGGCTCCGATCGCCATCCCGACATCCGCTGCTACTAGGGCAGGCGAGTCATTGATCCCGTCTCCGACCATCGCCACC

Coding sequence (CDS)

ATGGATGAGACCACACTAACAGAAGAAGCTGCCATGGCGGCTCCCGCGATCCACGGTGGTAACCGAAACCGAGTCGAAGGGAACACGACGCCCGCTGCGATGGTTATAACATCTTGCAAGTCATTTTTCATTAGAACAATGTCTGCTGCCTCAATGGCAATGTCCGTGCCGGCTCCGATCGCCATCCCGACATCCGCTGCTACTAGGGCAGGCGAGTCATTGATCCCGTCTCCGACCATCGCCACC

Protein sequence

MDETTLTEEAAMAAPAIHGGNRNRVEGNTTPAAMVITSCKSFFIRTMSAASMAMSVPAPIAIPTSAATRAGESLIPSPTIAT
Homology
[Close]
BLAST of Lsi09G002690 vs. TrEMBL
Match: A0A0A9PTB8_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.6e-08
Identity = 40/48 (83.33%), Postives = 41/48 (85.42%), Query Frame = 1 

Query: 35 VITSCKSFFIRTMSAASMAMSVPAPIAIPTSAATRAGESLIPSPTIAT 83
          VITS K  F+RTMSAASMA SVPAPIA PTSA T AGESLIPSPTIAT
Sbjct: 13 VITSSKLLFMRTMSAASMATSVPAPIARPTSADTSAGESLIPSPTIAT 60

The following BLAST results are available for this feature:
BLAST of Lsi09G002690 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi09G002690 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A9PTB8_ARUDO1.6e-0883.33Uncharacterized protein OS=Arundo donax PE=4 SV=1[more]
BLAST of Lsi09G002690 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi09G002690 vs. NCBI nr
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi09G002690.1Lsi09G002690.1mRNA