Lsi09G001810 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi09G001810
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr09 : 1899192 .. 1901780 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATCTCTGCATTGCAACAAACCAGCTGATCATGGGCACGGCCGGCACCAGCAGAAGCATGACCAACAGCATCACCATTGCTTCGGCGGCCACGTCTCTGACAAGATCACAGGCGTCTTCAAAGGCCACCATCATGGCCAGGCTCCACCAGCATCAGTATGGGCGCCGGAGCACCACTTTGCCAATGCCGCCTACTGCAAGCCAGCCCACCATCATGGCCAGGCTCCACCGGCATCGGCATCGGCGCCGGTGGACCACTTTGCCAATGCCGGCTACTGGAACCCAGCCTACCATCATGGCCAGGCTCCACTGATATCGGCATTGGAGCCGGTGCACCACTTTGCCAATGTCGGCTACTGGAAGCCAGCCCACCATCATGGCCAGGCTCCACCGGCATCGGCATCGGCGTCGGTGCACCACTTTGCCAATGCCGGCTACTGCAAGCCAGCCCACCATCATGACCAGGCTCCACCGGCATCGGCATCGGCGCTAGTGCACCACTCTGCCGATGCCGGCTACTGCAAGCCAGCCCACCATCATGACCAGGCTCCACCGGCATCGGCATCGGCGCTAGTGCACCACTCTGCCGATGCCGGCTACTGCAAGCCGGCCCACCATCATGGCCAGGCTCCACCGGCATCAACATCGGCGTGCACCTGCAAGCCAGCCCACCATCATGGCCAGGCTCCACCGGCATCAGCATCGGCGTGCACCTACAAACCAGCCCACCATCATGGCCAGGATCCACCGGCATCGACGCCGGTGCACCACTCTACCAATGCCGGCTACTGCAAGCCAGCTGGGTCAAATAAGAAGGAACACCACAAGAATAGAGAAGGGGGTTTTCTTCATCAGATCAATGATGTCTGGTCTGACCACAGCAGTGATAGTGAAAATGAATGTCACAAACCCCATCACAACAAGAAGGTAAGTTTAATTTTCTTGCTTCGATTCTCTTATTTTGATTTCTTCGATATATAATTTCATGTCGGGTTTTACTATCATTGTAAAATAGAATTCGCCAAGTGTTTGATTGTTTACCTACGAAAACGTGAGTTGCTGGGTTTAGTTTTAGCATGTTGACAACCGTGTCATATGATAGTAATAACCGCTGATTTGCACAATTGATCATAGACATGGGTTGAAACGTATTGACATAAAGTCTATGACTTTCACGAGTTATGCTATGGCGTTCGTAATATACACTACTAGTTTGGGCAAGCACGCTCAACTGCAAAGTTTTGATAGGATCTTGTGCATTAGAGTTAGTATCTTTTTATAAATTTTTTTTTTTATTTGTATTTTCTCTTTGCTTTTATTATGTAATTATTTTGCCTGGATTTGCAGAACTGAATTGAGGGAGGAAGGTGAATGAAATGAAGGAACCAGTGGATGCCTCTAAACTACTACTGCTACTAAGTATTTGATACTACTGCTACTAAGAATTTGAGCGAAACAAAAATAAAGATCTAGATGGTAATTTATGCCTCCTACTGTACTTACTTATTTTTCCTCGTTTGAAATAAAACTTATGGATATATGAATCTAAAAATAGTTCAATAGATATGACATCAATTACTATTTTAAAAAGTCAATAGTTCGATTCTCCACTCACTCAAATAATATCCACTCTGTGCTTTTCAACCTCAAATGTACCTTGTACATAAAAAGAAAATGAAATTTCATTATTGATATTTGGAAACTAATATGTTCATGTAAAATGAATATGCAATTCACAAAAAAGTTGAATGAGAGGCATCTGAAATTCTGAATAAGGACTAAACAAAACAGTAAAACGGAAAAATGAGTTCCCAACTGTGCTCTATTGAACAAAACTAAAGGCGAGAAAAAGGAGAGGCATTAAAACTACTAGCAAACTTATGTAACCATGACAGCAAAACAACTTCCTTACACATTACAAAGAAAAGCAGCTATAACAACTTCCTTTACCAACCAAAAAAGTCCTCAGTAACCATGACAGCAAAACAAGAAAAATCAGGACACCTTCCGAGTTCGATTTCCTTCTCTTGAACTGTTTCCGTGGCTGTTTCGCATTCTTCTTAGCTTCGGTTTCCATTGCCACAGAATGAAACTCTTTTGGTGTTTCTGTTTCTCTGAAGATTTGTTGCTTATTTATTTGTTGAAGATTGGTTGTTTCTTTTTCCCTTAGCTGTAGCTAGCTCTCTGAACTCAACTGGAACGACAAGTGCAACCAAACAAAGCAAACAACTGATCAGCCATTGACTTGTAGTTATCAAGCTTCAACTATTTTACCCAAATGACCCTTCTCTCCTCTTTTACTTTTTTCATATATTATTAGAGCTTCTACCACTGTGAAAAAGAGAATATTACCTTCTGATTAAGGGTCAAAATCAAAATTTGAATATGTGGTGGGTACGATTAAATTTTGACCAAAAATCAAACCAAACCAATCTACGTTTGATCATAGAATCAGTTTGATTGTGCTTGTCTTTTGATATTAGGTCTGAAAGGTTGATGAGGACAAGGCCTACCATGTTGGGTATCTTGTTCTTTGGTCGGGTCCGGGTCGGGTTGGACTCTTTTATTGTTGAGTCGTGGAGCTAA

mRNA sequence

ATGGCATCTCTGCATTGCAACAAACCAGCTGATCATGGGCACGGCCGGCACCAGCAGAAGCATGACCAACAGCATCACCATTGCTTCGGCGGCCACGTCTCTGACAAGATCACAGGCGTCTTCAAAGGCCACCATCATGGCCAGGCTCCACCAGCATCAGTATGGGCGCCGGAGCACCACTTTGCCAATGCCGCCTACTGCAAGCCAGCCCACCATCATGGCCAGGCTCCACCGGCATCGGCATCGGCGCCGGTGGACCACTTTGCCAATGCCGGCTACTGGAACCCAGCCTACCATCATGGCCAGGCTCCACTGATATCGGCATTGGAGCCGGTGCACCACTTTGCCAATGTCGGCTACTGGAAGCCAGCCCACCATCATGGCCAGGCTCCACCGGCATCGGCATCGGCGTCGGTGCACCACTTTGCCAATGCCGGCTACTGCAAGCCAGCCCACCATCATGACCAGGCTCCACCGGCATCGGCATCGGCGCTAGTGCACCACTCTGCCGATGCCGGCTACTGCAAGCCAGCCCACCATCATGACCAGGCTCCACCGGCATCGGCATCGGCGCTAGTGCACCACTCTGCCGATGCCGGCTACTGCAAGCCGGCCCACCATCATGGCCAGGCTCCACCGGCATCAACATCGGCGTGCACCTGCAAGCCAGCCCACCATCATGGCCAGGCTCCACCGGCATCAGCATCGGCGTGCACCTACAAACCAGCCCACCATCATGGCCAGGATCCACCGGCATCGACGCCGGTGCACCACTCTACCAATGCCGGCTACTGCAAGCCAGCTGGGTCAAATAAGAAGGAACACCACAAGAATAGAGAAGGGGGTTTTCTTCATCAGATCAATGATGTCTGGTCTGAAAGGTTGATGAGGACAAGGCCTACCATGTTGGGTATCTTGTTCTTTGGTCGGGTCCGGGTCGGGTTGGACTCTTTTATTGTTGAGTCGTGGAGCTAA

Coding sequence (CDS)

ATGGCATCTCTGCATTGCAACAAACCAGCTGATCATGGGCACGGCCGGCACCAGCAGAAGCATGACCAACAGCATCACCATTGCTTCGGCGGCCACGTCTCTGACAAGATCACAGGCGTCTTCAAAGGCCACCATCATGGCCAGGCTCCACCAGCATCAGTATGGGCGCCGGAGCACCACTTTGCCAATGCCGCCTACTGCAAGCCAGCCCACCATCATGGCCAGGCTCCACCGGCATCGGCATCGGCGCCGGTGGACCACTTTGCCAATGCCGGCTACTGGAACCCAGCCTACCATCATGGCCAGGCTCCACTGATATCGGCATTGGAGCCGGTGCACCACTTTGCCAATGTCGGCTACTGGAAGCCAGCCCACCATCATGGCCAGGCTCCACCGGCATCGGCATCGGCGTCGGTGCACCACTTTGCCAATGCCGGCTACTGCAAGCCAGCCCACCATCATGACCAGGCTCCACCGGCATCGGCATCGGCGCTAGTGCACCACTCTGCCGATGCCGGCTACTGCAAGCCAGCCCACCATCATGACCAGGCTCCACCGGCATCGGCATCGGCGCTAGTGCACCACTCTGCCGATGCCGGCTACTGCAAGCCGGCCCACCATCATGGCCAGGCTCCACCGGCATCAACATCGGCGTGCACCTGCAAGCCAGCCCACCATCATGGCCAGGCTCCACCGGCATCAGCATCGGCGTGCACCTACAAACCAGCCCACCATCATGGCCAGGATCCACCGGCATCGACGCCGGTGCACCACTCTACCAATGCCGGCTACTGCAAGCCAGCTGGGTCAAATAAGAAGGAACACCACAAGAATAGAGAAGGGGGTTTTCTTCATCAGATCAATGATGTCTGGTCTGAAAGGTTGATGAGGACAAGGCCTACCATGTTGGGTATCTTGTTCTTTGGTCGGGTCCGGGTCGGGTTGGACTCTTTTATTGTTGAGTCGTGGAGCTAA

Protein sequence

MASLHCNKPADHGHGRHQQKHDQQHHHCFGGHVSDKITGVFKGHHHGQAPPASVWAPEHHFANAAYCKPAHHHGQAPPASASAPVDHFANAGYWNPAYHHGQAPLISALEPVHHFANVGYWKPAHHHGQAPPASASASVHHFANAGYCKPAHHHDQAPPASASALVHHSADAGYCKPAHHHDQAPPASASALVHHSADAGYCKPAHHHGQAPPASTSACTCKPAHHHGQAPPASASACTYKPAHHHGQDPPASTPVHHSTNAGYCKPAGSNKKEHHKNREGGFLHQINDVWSERLMRTRPTMLGILFFGRVRVGLDSFIVESWS
BLAST of Lsi09G001810 vs. TrEMBL
Match: D4HPR8_PLAFA (Histidine-rich protein 2 (Fragment) OS=Plasmodium falciparum GN=HRPII PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.5e-09
Identity = 79/239 (33.05%), Postives = 102/239 (42.68%), Query Frame = 1

Query: 26  HHCFGGHVSDKITGVFKGHHHGQAPPASVWAPEHHFANAAYCKPAHHHGQAPPASASAPV 85
           HH    H +  +      HH   A  A   A  HH  +AA    AHH   A  A  +A  
Sbjct: 5   HHVADAHHAHHVADAHHAHHVADAHHAHHAADAHHAHHAADAHHAHHAAYAHHAHHAADA 64

Query: 86  DHFANAGYWNPAYHHGQAPLISALEPVHHFANVGYWKPAHHHGQAPPASASASVHHFANA 145
            H  +A +   A+H   A   +     HH A+  +   AHH   A  A  +A  HH  +A
Sbjct: 65  HHAHHAHHAADAHHAHHA---ADAHHAHHAADAHH---AHHAADAHHAHHAADAHHAHHA 124

Query: 146 GYCKPAHHHDQAPPASASALVHHSADAGYCKPAHHHDQAPPASASALVHHSADAGYCKPA 205
            Y   AHH   AP A  +A  HH+ADA +   AHH   A  A+ +   HH+ADA +   A
Sbjct: 125 AY---AHHAHHAPDAHHAADAHHAADAHHAADAHHAADAHHAAYAHHAHHAADAHHAADA 184

Query: 206 HHHGQAPPA--STSACTCKPAHHHGQAPPASASACTYKPAHHHGQDPPASTPVHHSTNA 263
           HH   A  A  +T A     AHH   A  A+A   T   AHH           HH+T+A
Sbjct: 185 HHATDAHHAHHATDAHHAADAHHAADAHHAAAHHAT--DAHH--------AAAHHATDA 224

BLAST of Lsi09G001810 vs. TrEMBL
Match: D4HQ11_PLAFA (Histidine-rich protein 2 (Fragment) OS=Plasmodium falciparum GN=HRPII PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 5.3e-07
Identity = 69/228 (30.26%), Postives = 87/228 (38.16%), Query Frame = 1

Query: 2   ASLHCNKPADHGHGRHQQKHDQQHHHCFGGHVSDKITGVFKGHHHGQAPPASVWAPEHHF 61
           A  H    A + H  H        HH    H +         HH   A  A   A  HH 
Sbjct: 44  ADAHHAHHAAYAHHAHHAADAHHAHHAADAHHAHHAADAHHAHHAADAHHAHHAADAHHA 103

Query: 62  ANAAYCKPAHHHGQAPPASASAPVDHFANAGYWNPAYHHGQAPLISALE---PVHHFANV 121
            +AA    AHH   A  A  +A   H  +A Y + A+H   A            HH A+ 
Sbjct: 104 HHAADAHHAHHAADAHHAHHAADAHHAHHAAYAHHAHHASDADDADDAHHASDAHHAADA 163

Query: 122 GYWKPAHHHGQAPPASASASVHHFANAGYCKPAHHHDQAPPASASALVHHSADAGYCKPA 181
            +   AHH   A  A+ +   HH A+A +   AHH   A  A      HH+ DA +   A
Sbjct: 164 HHASDAHHAADAHHAAYAHHAHHAADAHHAADAHHATDAHHA------HHADDAHHATDA 223

Query: 182 HHHDQAPPASASALVHHSADAGYCKPAHHHGQAPPASTSACTCKPAHH 227
           HH D A         HH+ADA +   AHH   A  A+    T   AHH
Sbjct: 224 HHADDA---------HHAADAHHAADAHHAADAHHAAAHHAT--DAHH 254

BLAST of Lsi09G001810 vs. NCBI nr
Match: gi|659074028|ref|XP_008437383.1| (PREDICTED: uncharacterized protein LOC103482815 isoform X1 [Cucumis melo])

HSP 1 Score: 95.5 bits (236), Expect = 1.8e-16
Identity = 50/70 (71.43%), Postives = 53/70 (75.71%), Query Frame = 1

Query: 1  MASLHCNKPADHGHGRHQQKHDQQH-HHCFGGHVSDKITGVF-KGHHHGQAPPASVWAPE 60
          MA   C KPADH HG+HQQKHDQQH HHCFGGHVSDKI GVF KGHHH QA PAS     
Sbjct: 1  MAYQQCTKPADHAHGQHQQKHDQQHDHHCFGGHVSDKIKGVFVKGHHHDQAHPAS--GAV 60

Query: 61 HHFANAAYCK 69
          HH AN ++CK
Sbjct: 61 HHSANDSHCK 68

BLAST of Lsi09G001810 vs. NCBI nr
Match: gi|659074030|ref|XP_008437384.1| (PREDICTED: uncharacterized protein LOC103482815 isoform X2 [Cucumis melo])

HSP 1 Score: 95.5 bits (236), Expect = 1.8e-16
Identity = 50/70 (71.43%), Postives = 53/70 (75.71%), Query Frame = 1

Query: 1  MASLHCNKPADHGHGRHQQKHDQQH-HHCFGGHVSDKITGVF-KGHHHGQAPPASVWAPE 60
          MA   C KPADH HG+HQQKHDQQH HHCFGGHVSDKI GVF KGHHH QA PAS     
Sbjct: 1  MAYQQCTKPADHAHGQHQQKHDQQHDHHCFGGHVSDKIKGVFVKGHHHDQAHPAS--GAV 60

Query: 61 HHFANAAYCK 69
          HH AN ++CK
Sbjct: 61 HHSANDSHCK 68

BLAST of Lsi09G001810 vs. NCBI nr
Match: gi|269101344|gb|ACZ25599.1| (histidine-rich protein 2, partial [Plasmodium falciparum])

HSP 1 Score: 71.2 bits (173), Expect = 3.6e-09
Identity = 79/239 (33.05%), Postives = 102/239 (42.68%), Query Frame = 1

Query: 26  HHCFGGHVSDKITGVFKGHHHGQAPPASVWAPEHHFANAAYCKPAHHHGQAPPASASAPV 85
           HH    H +  +      HH   A  A   A  HH  +AA    AHH   A  A  +A  
Sbjct: 5   HHVADAHHAHHVADAHHAHHVADAHHAHHAADAHHAHHAADAHHAHHAAYAHHAHHAADA 64

Query: 86  DHFANAGYWNPAYHHGQAPLISALEPVHHFANVGYWKPAHHHGQAPPASASASVHHFANA 145
            H  +A +   A+H   A   +     HH A+  +   AHH   A  A  +A  HH  +A
Sbjct: 65  HHAHHAHHAADAHHAHHA---ADAHHAHHAADAHH---AHHAADAHHAHHAADAHHAHHA 124

Query: 146 GYCKPAHHHDQAPPASASALVHHSADAGYCKPAHHHDQAPPASASALVHHSADAGYCKPA 205
            Y   AHH   AP A  +A  HH+ADA +   AHH   A  A+ +   HH+ADA +   A
Sbjct: 125 AY---AHHAHHAPDAHHAADAHHAADAHHAADAHHAADAHHAAYAHHAHHAADAHHAADA 184

Query: 206 HHHGQAPPA--STSACTCKPAHHHGQAPPASASACTYKPAHHHGQDPPASTPVHHSTNA 263
           HH   A  A  +T A     AHH   A  A+A   T   AHH           HH+T+A
Sbjct: 185 HHATDAHHAHHATDAHHAADAHHAADAHHAAAHHAT--DAHH--------AAAHHATDA 224

BLAST of Lsi09G001810 vs. NCBI nr
Match: gi|269101530|gb|ACZ25692.1| (histidine-rich protein 2, partial [Plasmodium falciparum])

HSP 1 Score: 63.5 bits (153), Expect = 7.6e-07
Identity = 69/228 (30.26%), Postives = 87/228 (38.16%), Query Frame = 1

Query: 2   ASLHCNKPADHGHGRHQQKHDQQHHHCFGGHVSDKITGVFKGHHHGQAPPASVWAPEHHF 61
           A  H    A + H  H        HH    H +         HH   A  A   A  HH 
Sbjct: 44  ADAHHAHHAAYAHHAHHAADAHHAHHAADAHHAHHAADAHHAHHAADAHHAHHAADAHHA 103

Query: 62  ANAAYCKPAHHHGQAPPASASAPVDHFANAGYWNPAYHHGQAPLISALE---PVHHFANV 121
            +AA    AHH   A  A  +A   H  +A Y + A+H   A            HH A+ 
Sbjct: 104 HHAADAHHAHHAADAHHAHHAADAHHAHHAAYAHHAHHASDADDADDAHHASDAHHAADA 163

Query: 122 GYWKPAHHHGQAPPASASASVHHFANAGYCKPAHHHDQAPPASASALVHHSADAGYCKPA 181
            +   AHH   A  A+ +   HH A+A +   AHH   A  A      HH+ DA +   A
Sbjct: 164 HHASDAHHAADAHHAAYAHHAHHAADAHHAADAHHATDAHHA------HHADDAHHATDA 223

Query: 182 HHHDQAPPASASALVHHSADAGYCKPAHHHGQAPPASTSACTCKPAHH 227
           HH D A         HH+ADA +   AHH   A  A+    T   AHH
Sbjct: 224 HHADDA---------HHAADAHHAADAHHAADAHHAAAHHAT--DAHH 254

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
D4HPR8_PLAFA2.5e-0933.05Histidine-rich protein 2 (Fragment) OS=Plasmodium falciparum GN=HRPII PE=4 SV=1[more]
D4HQ11_PLAFA5.3e-0730.26Histidine-rich protein 2 (Fragment) OS=Plasmodium falciparum GN=HRPII PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|659074028|ref|XP_008437383.1|1.8e-1671.43PREDICTED: uncharacterized protein LOC103482815 isoform X1 [Cucumis melo][more]
gi|659074030|ref|XP_008437384.1|1.8e-1671.43PREDICTED: uncharacterized protein LOC103482815 isoform X2 [Cucumis melo][more]
gi|269101344|gb|ACZ25599.1|3.6e-0933.05histidine-rich protein 2, partial [Plasmodium falciparum][more]
gi|269101530|gb|ACZ25692.1|7.6e-0730.26histidine-rich protein 2, partial [Plasmodium falciparum][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi09G001810.1Lsi09G001810.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi09G001810Cucumber (Chinese Long) v3cuclsiB267
Lsi09G001810Cucumber (Chinese Long) v3cuclsiB345
Lsi09G001810Watermelon (97103) v2lsiwmbB007
Lsi09G001810Watermelon (97103) v2lsiwmbB030
Lsi09G001810Wax gourdlsiwgoB008
Lsi09G001810Wax gourdlsiwgoB047
Lsi09G001810Bottle gourd (USVL1VR-Ls)lsilsiB020
Lsi09G001810Cucumber (Gy14) v1cgylsiB138
Lsi09G001810Cucumber (Gy14) v1cgylsiB487
Lsi09G001810Cucurbita maxima (Rimu)cmalsiB267
Lsi09G001810Cucurbita maxima (Rimu)cmalsiB300
Lsi09G001810Cucurbita maxima (Rimu)cmalsiB530
Lsi09G001810Cucurbita maxima (Rimu)cmalsiB624
Lsi09G001810Cucurbita moschata (Rifu)cmolsiB255
Lsi09G001810Cucurbita moschata (Rifu)cmolsiB288
Lsi09G001810Cucurbita moschata (Rifu)cmolsiB516
Lsi09G001810Cucurbita moschata (Rifu)cmolsiB611
Lsi09G001810Cucurbita pepo (Zucchini)cpelsiB131
Lsi09G001810Wild cucumber (PI 183967)cpilsiB244
Lsi09G001810Wild cucumber (PI 183967)cpilsiB322
Lsi09G001810Cucumber (Chinese Long) v2culsiB245
Lsi09G001810Cucumber (Chinese Long) v2culsiB322
Lsi09G001810Melon (DHL92) v3.5.1lsimeB012
Lsi09G001810Melon (DHL92) v3.5.1lsimeB038
Lsi09G001810Watermelon (Charleston Gray)lsiwcgB008
Lsi09G001810Watermelon (Charleston Gray)lsiwcgB033
Lsi09G001810Watermelon (97103) v1lsiwmB014
Lsi09G001810Watermelon (97103) v1lsiwmB027
Lsi09G001810Cucumber (Gy14) v2cgyblsiB231
Lsi09G001810Cucumber (Gy14) v2cgyblsiB294
Lsi09G001810Melon (DHL92) v3.6.1lsimedB012
Lsi09G001810Melon (DHL92) v3.6.1lsimedB041
Lsi09G001810Silver-seed gourdcarlsiB038
Lsi09G001810Silver-seed gourdcarlsiB327
Lsi09G001810Silver-seed gourdcarlsiB534