Lsi08G016510 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi08G016510
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionPoor homologous synapsis 1
Locationchr08 : 24338524 .. 24340434 (+)
   



The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGAAGAGCGGGAGAACTAGAAGGATCGCTGAGAGAGGGAAGAATGGCGGGATTTGAAGGCACGGCGCAGAGCAAAGAGCAAGCGGAAATGTCATTTGGTGCCATTAGAGACCAGTGGGAAATTCAATTCTCTCGCTTCGTTTGGCATCCAAGTAGCAGCTCCACCAGCACCAACCTCCGTCCTCTCCTTCCCTATGCCCGAAATCGCCTGCCTCGAGGCACATGGATCTCTTCGTCTTCCACTGTTTTCCTACAACTCCTCCACCATTGCTCCACCTCTGACATGATTCTTGTCGTACGCTTACGAGATAACATCCTTGTGAGTTTCTACTCGCTATCTGTATGTACAAGTACATTTTTCAGATGCCAAACCTTTTTATTCCGCTTAATAGTATACGTTCGCTTCTTCAATTTCCTCGATCTCTATGTTTCATGCATTAAATGAACTTCTTATTGCATTTCTTTAAATTCATGTAGTTTCTTATCGATGCCCCTGAAATCAACCAGATCTTATGCTAGTCTCCGCCTAAGGAGTTGGTCTCTTGTTTGTCTTCTTCTTTTTCCTCACTTGCCCTCGCTGCATGGATGATTGCCTTCGATGCTGCTTGTTGATTTCATTCTATACGCTTAGTCTGTAGTTCAAGTGCAGCAACTTATATCGAGTCCAGTCGTCTAACACAACAGTATTCTGTGAAAATACCAATCTAAGCCTCAATTTCTATTAGTTGGATGAGTTAATCGCAATGGATGAAGTATATCTTATTTGCATACTGATGTAGGAAGAGCACTTCCTTTCCAAGCTGCATTTCTCATGGCCTCAGGTGTCCTGTGTCTCTGGTTTCCCAGCCAGAGGCACCAGAACTATTTTTGGAAGTTACAGAGATTCAGTTGACGAGGCAAGTCGTTATGTATTCATCGAGATTTTGTTAATTTTTGTGGTGCCATGGGATTTGAAATGAAGTAGTTTTCTGAGGACGAGTATGACTTGTTTTTTCTTGGCAGATCCAAAAGTTTGCCCTAAGATTTTCAACATCCAACGAAACTGATACGTTTGTGAACATTATCAAGGTATTTAATATGAATTCCTTTTATGGATAGGTTTAATGGAAGATATTTCTATTCTAAAAGCATTTCTATTCTAAAAGCTTACTGCTGCTATTATGCTATTCTCCCGTTTAGGGAATGTCAAGGAAAGCAAGTGATATACAGCCAATAAGCTGCGACTTCGAGTCTCATATTTCAACACACTCTGAGTTATTATCGCCAAATAGACCGTCTGATAGGTGAATGGAAATTCTCCAATAATCTAATGCATTATTTTATTTTTATAGTTAGAGAGAGAGAGAGATCTGATGTATATTTTATGTTTCTAGCCTTTCTGAAGAATTGAGCAATTCTACCGTCCTCCAGCCTTACACCCCTGAAATGCCTTTGAGCTTACGAGATACTGTAGAGACATATTCATGGTCTCAGGAAAATAATGCACATTTTGACCACTTAGATAGCATCTTTGCAGCCTTGCCTCCCAGTTTTACTTCTATGCTATCAAACTGTTCAGATGTCAAAAGAGGTAGATGCTATGACAAATTTAGAACAAAATATCTTTCAAATCATCGTATTAACCAATTTCGTTCGCTATAAGATCAAACTGCAACTCAGTCATCTGCTGCAAAGGATGTTGATCTAAAGTCTCAAATCATGGTATGTTGAATTGTTATCAAATGAATTTCTTTTTGTGCTGCTCGGTATTAGGCTGTTTTGACATTGGAAACTTGACTTGAACTTAATATTGTACACTTTATGATTGAATTTGTTTTGGAACAGAAATGTATGGAGGACTCTTCCTTTCAAGGTACGGCTATATCAACACTTAAATTAAACTTGCAAATCTTTCCATGGCCTGCACTTTAG

mRNA sequence

TTGAAGAGCGGGAGAACTAGAAGGATCGCTGAGAGAGGGAAGAATGGCGGGATTTGAAGGCACGGCGCAGAGCAAAGAGCAAGCGGAAATGTCATTTGGTGCCATTAGAGACCAGTGGGAAATTCAATTCTCTCGCTTCGTTTGGCATCCAAGTAGCAGCTCCACCAGCACCAACCTCCGTCCTCTCCTTCCCTATGCCCGAAATCGCCTGCCTCGAGGCACATGGATCTCTTCGTCTTCCACTGTTTTCCTACAACTCCTCCACCATTGCTCCACCTCTGACATGATTCTTGTCGTACGCTTACGAGATAACATCCTTGAAGAGCACTTCCTTTCCAAGCTGCATTTCTCATGGCCTCAGGTGTCCTGTGTCTCTGGTTTCCCAGCCAGAGGCACCAGAACTATTTTTGGAAGTTACAGAGATTCAGTTGACGAGGCAAGTCGTTATATCCAAAAGTTTGCCCTAAGATTTTCAACATCCAACGAAACTGATACGTTTGTGAACATTATCAAGGGAATGTCAAGGAAAGCAAGTGATATACAGCCAATAAGCTGCGACTTCGAGTCTCATATTTCAACACACTCTGAGTTATTATCGCCAAATAGACCGTCTGATAGCCTTTCTGAAGAATTGAGCAATTCTACCGTCCTCCAGCCTTACACCCCTGAAATGCCTTTGAGCTTACGAGATACTGTAGAGACATATTCATGGTCTCAGGAAAATAATGCACATTTTGACCACTTAGATAGCATCTTTGCAGCCTTGCCTCCCAGTTTTACTTCTATGCTATCAAACTGTTCAGATGTCAAAAGAGATCAAACTGCAACTCAGTCATCTGCTGCAAAGGATGTTGATCTAAAGTCTCAAATCATGAAATGTATGGAGGACTCTTCCTTTCAAGGTACGGCTATATCAACACTTAAATTAAACTTGCAAATCTTTCCATGGCCTGCACTTTAG

Coding sequence (CDS)

ATGGCGGGATTTGAAGGCACGGCGCAGAGCAAAGAGCAAGCGGAAATGTCATTTGGTGCCATTAGAGACCAGTGGGAAATTCAATTCTCTCGCTTCGTTTGGCATCCAAGTAGCAGCTCCACCAGCACCAACCTCCGTCCTCTCCTTCCCTATGCCCGAAATCGCCTGCCTCGAGGCACATGGATCTCTTCGTCTTCCACTGTTTTCCTACAACTCCTCCACCATTGCTCCACCTCTGACATGATTCTTGTCGTACGCTTACGAGATAACATCCTTGAAGAGCACTTCCTTTCCAAGCTGCATTTCTCATGGCCTCAGGTGTCCTGTGTCTCTGGTTTCCCAGCCAGAGGCACCAGAACTATTTTTGGAAGTTACAGAGATTCAGTTGACGAGGCAAGTCGTTATATCCAAAAGTTTGCCCTAAGATTTTCAACATCCAACGAAACTGATACGTTTGTGAACATTATCAAGGGAATGTCAAGGAAAGCAAGTGATATACAGCCAATAAGCTGCGACTTCGAGTCTCATATTTCAACACACTCTGAGTTATTATCGCCAAATAGACCGTCTGATAGCCTTTCTGAAGAATTGAGCAATTCTACCGTCCTCCAGCCTTACACCCCTGAAATGCCTTTGAGCTTACGAGATACTGTAGAGACATATTCATGGTCTCAGGAAAATAATGCACATTTTGACCACTTAGATAGCATCTTTGCAGCCTTGCCTCCCAGTTTTACTTCTATGCTATCAAACTGTTCAGATGTCAAAAGAGATCAAACTGCAACTCAGTCATCTGCTGCAAAGGATGTTGATCTAAAGTCTCAAATCATGAAATGTATGGAGGACTCTTCCTTTCAAGGTACGGCTATATCAACACTTAAATTAAACTTGCAAATCTTTCCATGGCCTGCACTTTAG

Protein sequence

MAGFEGTAQSKEQAEMSFGAIRDQWEIQFSRFVWHPSSSSTSTNLRPLLPYARNRLPRGTWISSSSTVFLQLLHHCSTSDMILVVRLRDNILEEHFLSKLHFSWPQVSCVSGFPARGTRTIFGSYRDSVDEASRYIQKFALRFSTSNETDTFVNIIKGMSRKASDIQPISCDFESHISTHSELLSPNRPSDSLSEELSNSTVLQPYTPEMPLSLRDTVETYSWSQENNAHFDHLDSIFAALPPSFTSMLSNCSDVKRDQTATQSSAAKDVDLKSQIMKCMEDSSFQGTAISTLKLNLQIFPWPAL
BLAST of Lsi08G016510 vs. Swiss-Prot
Match: POHS1_ARATH (Protein POOR HOMOLOGOUS SYNAPSIS 1 OS=Arabidopsis thaliana GN=PHS1 PE=1 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 7.8e-30
Identity = 92/222 (41.44%), Postives = 125/222 (56.31%), Query Frame = 1

Query: 1   MAGFEGTAQSKEQAEMSFGAIRDQWEIQFSRFVWHPSSSSTSTNLRPLLPYARNRLPRGT 60
           MAG    +  +  AE S    R  W I F+RFV +PSS S    L+PL    +   P GT
Sbjct: 1   MAGSLTASNRRRNAEDSSEIYR--WTIGFARFVHYPSSPSPHPVLKPLGKREQYHSPHGT 60

Query: 61  WIS-SSSTVFLQLLHHCSTSDMILVVRLRDNILEEHFLSKLHFSWPQVSCVSGFPARGTR 120
           W+S SSSTV L ++   + SD+IL V+L   +LEEH++SKL+F+WPQ+SCVSGFP+RG+R
Sbjct: 61  WLSASSSTVSLHIVDELNRSDVILSVKLGQKVLEEHYISKLNFTWPQMSCVSGFPSRGSR 120

Query: 121 TIFGSYRDSVDEASRYIQKFALRFSTSNETDTFVNI----IKGMSRKASDIQ--PISCDF 180
            IF +Y DS ++    IQKFALRFST +    FV      IKG+   ++  Q     CD 
Sbjct: 121 AIFVTYMDSANQ----IQKFALRFSTCDAALEFVEALKEKIKGLKEASTQNQKNKTRCD- 180

Query: 181 ESHISTHSELLSPNRPSDSL-----SEELSNSTVLQPYTPEM 211
              +S  S+      PSD++      +E +    L  Y PEM
Sbjct: 181 ---VSFQSDY----NPSDAIIPRATQKEPNMVRPLNSYVPEM 208

BLAST of Lsi08G016510 vs. Swiss-Prot
Match: PHS1_MAIZE (Protein POOR HOMOLOGOUS SYNAPSIS 1 OS=Zea mays GN=PHS1 PE=1 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.6e-19
Identity = 72/242 (29.75%), Postives = 121/242 (50.00%), Query Frame = 1

Query: 24  QWEIQFSRFVWHPSSSSTS---TNLRPLLPYARNRLPRGTWISSSSTVFLQLLHHCSTSD 83
           +WE++++R+   P    T+   + LR ++        +GTWI +S    L + H    S 
Sbjct: 32  KWEVEYARYFGTPRRDPTAAPPSGLRYIMRGVHRH--QGTWIPASCPASLCVCHPSLPSA 91

Query: 84  M-ILVVRLRDNILEEHFLSKLHFSWPQVSCVSGFPARGTRTIFGSYRDSVDEASRYIQKF 143
           + +L + + D + EEHF+S L+FSWPQV+CV+  P RG+R +F S+ D      + IQKF
Sbjct: 92  VPVLTISIGDVVFEEHFVSILNFSWPQVTCVTQCPIRGSRVVFVSFCDKF----KQIQKF 151

Query: 144 ALRFSTSNETDTFVNIIKGM--SRKASDIQPISCDFESHISTHSELLSPN------RPSD 203
           A+RF    + ++F++ ++    S    DI P   D+    S+ SE +  N        + 
Sbjct: 152 AVRFPQPCDAESFLSCVECSCGSSGTMDIIPFGSDYVCEDSSASEYIVSNGLHHRLDDAS 211

Query: 204 SLSEELSNSTVLQPYTPEMPLSLRDTVETYSWSQENNAHFDHLDSIFAALPPSFTSMLSN 254
           +L E+  + T+ +P       + +  +E  S S  +N          +A PPSF  ML +
Sbjct: 212 NLEEQCFDHTIDEPPMNYHEETDQHVLEPLSASNTSNN---------SAFPPSFNQMLKS 258

BLAST of Lsi08G016510 vs. TrEMBL
Match: M5Y8M5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022200mg PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 1.9e-59
Identity = 137/283 (48.41%), Postives = 180/283 (63.60%), Query Frame = 1

Query: 20  AIRDQWEIQFSRFVWHPSSSSTST--NLRPLLPYARNRLPRGTWISSSSTVFLQLLHHCS 79
           A+R+QWE+ F+ F  +P    TST  +L PL P  R R P   WISSSS   LQL    S
Sbjct: 27  AVREQWEVHFALFFPYPPPPITSTCPDLVPLDPKYRRRRPLDRWISSSSLARLQLARDHS 86

Query: 80  TSDMILVVRLRDNILEEHFLSKLHFSWPQVSCVSGFPARGTRTIFGSYRDSVDEASRYIQ 139
            S+++L V   D ILEEH++SKLHF WPQVSC+SGFPARGTR IF SYRD  +E    IQ
Sbjct: 87  NSEVVLTVGFADKILEEHYVSKLHFIWPQVSCMSGFPARGTRAIFVSYRDCSEE----IQ 146

Query: 140 KFALRFSTSNETDTFVNIIKGMSRKASDIQPISCDFESHISTHSELLSPNRPSDSLSEEL 199
           KF  RF +  E + F+N +KG+ ++  D +P++ D  S IS+ SEL S NRP +   ++L
Sbjct: 147 KFGFRFLSLQEAEKFMNALKGICKEGMDTEPVNTDVGSEISSQSELTSSNRPLNPACKDL 206

Query: 200 SNSTVLQPYTPEM-PLSLRDTVETYSWSQENNAHFDHLDSIFAALPPSFTSMLSNCSDVK 259
           +  T +Q YTP++ P  L +  E YS +QE     D+  S FAALPPSFTS LSNC  V 
Sbjct: 207 TTMTPVQTYTPKISPSLLNNEAEQYSCTQEFTP-IDNFQSNFAALPPSFTSFLSNCGPVV 266

Query: 260 RDQTATQSSAAKDVDLKSQIMKCMEDSSFQGTAISTLKLNLQI 300
            +Q ATQ + +++VDLKSQI + MED+SFQ       K+  +I
Sbjct: 267 -EQVATQPTGSQEVDLKSQIARYMEDASFQDMLFQVEKVISEI 303

BLAST of Lsi08G016510 vs. TrEMBL
Match: A0A061E6E2_THECC (Poor ous synapsis 1, putative isoform 1 OS=Theobroma cacao GN=TCM_010474 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 4.9e-55
Identity = 125/279 (44.80%), Postives = 180/279 (64.52%), Query Frame = 1

Query: 10  SKEQAEMSFGAIRDQWEIQFSRFVWHPSSSSTSTNLRPLLPYARNRLPRGTWISSS-STV 69
           ++++ +     I+DQW++ F+RF+ +PS  ST  +L PL    R R P G WI++S    
Sbjct: 11  NRQENDKPVNTIKDQWQVLFARFMNYPSLPSTCPSLVPLPKNRRFRAPEGNWIATSFPAA 70

Query: 70  FLQLLHHCSTSDMILVVRLRDNILEEHFLSKLHFSWPQVSCVSGFPARGTRTIFGSYRDS 129
            LQ++   S S+ ILVV L + ILEEH++SKLHFSWPQV C+  FPARG+R++F SY+DS
Sbjct: 71  SLQIISDLSGSETILVVCLSEKILEEHYISKLHFSWPQVQCIPEFPARGSRSVFVSYKDS 130

Query: 130 VDEASRYIQKFALRFSTSNETDTFVNIIKGMSRKASDIQPISCDFESHISTHSELLSPNR 189
             E    IQKFALRFST  E ++F+N ++   R   +I+P+  DF S  ST +E +S N 
Sbjct: 131 AYE----IQKFALRFSTLREVESFMNTLRETLRVGDEIEPLQRDFGSDFSTQTEFISSNG 190

Query: 190 PSDSLSEELSNSTVLQPYTPEMPLSLRDTVETYSWSQENNAHFDH-LDSIFAALPPSFTS 249
               + +ELS+ T    YTP+M  SL   +E  S+ Q+  A  +H  + IF ALPPSFTS
Sbjct: 191 LPSRVCQELSDMTAGNSYTPQMDPSLSYEIEQQSFDQD--AMLNHNCEGIFPALPPSFTS 250

Query: 250 MLSNCSDVKRDQTATQSSAAKDVDLKSQIMKCMEDSSFQ 287
           +L++C     +Q A Q + ++++DLKSQI++ MEDSSFQ
Sbjct: 251 LLTDCRSA-AEQAAKQPTVSEEIDLKSQIVRYMEDSSFQ 282

BLAST of Lsi08G016510 vs. TrEMBL
Match: A0A067JUY7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17801 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 1.9e-54
Identity = 134/294 (45.58%), Postives = 182/294 (61.90%), Query Frame = 1

Query: 12  EQAEMSFGAIRDQWEIQFSRFVWHPSSSSTSTNLRPLLPYARNRLPRGTWISSSS-TVFL 71
           E  E    AI  QW + FSR++ + S  STS++L P     R+R   G WISS S T  L
Sbjct: 11  ESLEKPDSAITHQWRVTFSRYIINLSLPSTSSSLVPAPNNWRSRSIPGYWISSDSPTASL 70

Query: 72  QLLHHCSTSDMILVVRLRDNILEEHFLSKLHFSWPQVSCVSGFPARGTRTIFGSYRDSVD 131
           QL++  S SD IL V   + I EEH++SKL F+WPQV+CVSG P RG+R +F SY+D V 
Sbjct: 71  QLVNSHSCSDAILSVCFNEKIFEEHYVSKLQFTWPQVACVSGCPPRGSRAVFVSYKDLVG 130

Query: 132 EASRYIQKFALRFSTSNETDTFVNIIKGMSRKASDIQPISCDFESHISTHSELLSPNR-- 191
           E    IQKFALRFS + E +TF+  +K + RK+++IQP++ DF S +S+ S  LS NR  
Sbjct: 131 E----IQKFALRFSVTTEAETFIKALKDILRKSTEIQPMNSDFRSELSSQSVFLSTNRSP 190

Query: 192 ------------PSDSLSEELSNSTVLQPYTPEMPLSLRDTVETYSWSQENNAHFDHLDS 251
                       PS + S +  NST  Q ++P++PL L   VE  + ++E     ++ + 
Sbjct: 191 SRACDEASNVTTPSQTFSPQPQNSTPFQTFSPQLPLRLNYEVEQEARTEETPPDHNY-EV 250

Query: 252 IFAALPPSFTSMLSN-CSDVKRDQTATQSSAAKDVDLKSQIMKCMEDSSFQGTA 290
           I +ALPPSF S L+N CS+VK  + ATQ ++ +D D KSQI KCMEDSSFQG A
Sbjct: 251 ISSALPPSFASFLTNCCSEVK--EAATQPTSVEDFDFKSQIAKCMEDSSFQGIA 297

BLAST of Lsi08G016510 vs. TrEMBL
Match: V7CA31_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G063800g PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 1.0e-52
Identity = 124/279 (44.44%), Postives = 182/279 (65.23%), Query Frame = 1

Query: 21  IRDQWEIQFSRFVWHPSSSSTSTNLRPLLPYARNRLPRGTWISSSSTVFLQLLHHCST-- 80
           +RDQWEI F+RF+ +PS  S+S +L PL P  R   PRG+WISSSS  FL+L    S+  
Sbjct: 14  VRDQWEICFARFIPYPSLPSSS-DLLPLPPRLRTLPPRGSWISSSSVAFLRLSSRLSSHL 73

Query: 81  SDMILVVRLRDNILEEHFLSKLHFSWPQVSCVSGFPARGTRTIFGSYRDSVDEASRYIQK 140
           S ++L +    ++LEEH++SKLHF+WPQVSCVSG+PARG RT+  SYRD + E    IQK
Sbjct: 74  SHLLLTISFNADLLEEHYVSKLHFTWPQVSCVSGYPARGIRTVLVSYRDPLGE----IQK 133

Query: 141 FALRFSTSNETDTFVNIIKGMSRKASDIQPISCDFESHISTHSELLSPNRPSDSLS-EEL 200
           FA+RF +  E ++F++++K + +   + +P++ DF S IS+ SE +S N  S S + EEL
Sbjct: 134 FAMRFPSIYEAESFIDVLKEILKGDKNPEPLNTDFGSEISSQSEFMSTNEHSYSRACEEL 193

Query: 201 SNSTVLQPYTPEMPLSLRDTVETYSWSQENNAHFDH-LDSIFAALPPSFTSMLSNCSDVK 260
           S  T +  Y P++PL + + V   S S+   A   H  + +  ALPPSF+S+L +CS  K
Sbjct: 194 SFMTPVDNYIPQLPLFVNNEVGQPSESEAKGATPSHNFEGMLPALPPSFSSLLMDCSQNK 253

Query: 261 RDQTATQSSAAKDVDLKSQIMKCMEDSSFQGTAISTLKL 296
            +    Q + +++++LKSQI++ MEDSSFQ   I   K+
Sbjct: 254 HE----QPTVSEEIELKSQIVRYMEDSSFQDMLIKVEKV 283

BLAST of Lsi08G016510 vs. TrEMBL
Match: A0A061E6I9_THECC (Poor ous synapsis 1, putative isoform 2 OS=Theobroma cacao GN=TCM_010474 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 1.0e-52
Identity = 125/288 (43.40%), Postives = 180/288 (62.50%), Query Frame = 1

Query: 10  SKEQAEMSFGAIRDQWEIQFSRFVWHPSSSSTSTNLRPLLPYARNRLPRGTWISSS-STV 69
           ++++ +     I+DQW++ F+RF+ +PS  ST  +L PL    R R P G WI++S    
Sbjct: 11  NRQENDKPVNTIKDQWQVLFARFMNYPSLPSTCPSLVPLPKNRRFRAPEGNWIATSFPAA 70

Query: 70  FLQLLHHCSTSDMILVVRLRDNILE---------EHFLSKLHFSWPQVSCVSGFPARGTR 129
            LQ++   S S+ ILVV L + ILE         EH++SKLHFSWPQV C+  FPARG+R
Sbjct: 71  SLQIISDLSGSETILVVCLSEKILEIRFCYMVQEEHYISKLHFSWPQVQCIPEFPARGSR 130

Query: 130 TIFGSYRDSVDEASRYIQKFALRFSTSNETDTFVNIIKGMSRKASDIQPISCDFESHIST 189
           ++F SY+DS  E    IQKFALRFST  E ++F+N ++   R   +I+P+  DF S  ST
Sbjct: 131 SVFVSYKDSAYE----IQKFALRFSTLREVESFMNTLRETLRVGDEIEPLQRDFGSDFST 190

Query: 190 HSELLSPNRPSDSLSEELSNSTVLQPYTPEMPLSLRDTVETYSWSQENNAHFDH-LDSIF 249
            +E +S N     + +ELS+ T    YTP+M  SL   +E  S+ Q+  A  +H  + IF
Sbjct: 191 QTEFISSNGLPSRVCQELSDMTAGNSYTPQMDPSLSYEIEQQSFDQD--AMLNHNCEGIF 250

Query: 250 AALPPSFTSMLSNCSDVKRDQTATQSSAAKDVDLKSQIMKCMEDSSFQ 287
            ALPPSFTS+L++C     +Q A Q + ++++DLKSQI++ MEDSSFQ
Sbjct: 251 PALPPSFTSLLTDCRSA-AEQAAKQPTVSEEIDLKSQIVRYMEDSSFQ 291

BLAST of Lsi08G016510 vs. TAIR10
Match: AT1G10710.1 (AT1G10710.1 poor homologous synapsis 1)

HSP 1 Score: 132.5 bits (332), Expect = 4.4e-31
Identity = 92/222 (41.44%), Postives = 125/222 (56.31%), Query Frame = 1

Query: 1   MAGFEGTAQSKEQAEMSFGAIRDQWEIQFSRFVWHPSSSSTSTNLRPLLPYARNRLPRGT 60
           MAG    +  +  AE S    R  W I F+RFV +PSS S    L+PL    +   P GT
Sbjct: 1   MAGSLTASNRRRNAEDSSEIYR--WTIGFARFVHYPSSPSPHPVLKPLGKREQYHSPHGT 60

Query: 61  WIS-SSSTVFLQLLHHCSTSDMILVVRLRDNILEEHFLSKLHFSWPQVSCVSGFPARGTR 120
           W+S SSSTV L ++   + SD+IL V+L   +LEEH++SKL+F+WPQ+SCVSGFP+RG+R
Sbjct: 61  WLSASSSTVSLHIVDELNRSDVILSVKLGQKVLEEHYISKLNFTWPQMSCVSGFPSRGSR 120

Query: 121 TIFGSYRDSVDEASRYIQKFALRFSTSNETDTFVNI----IKGMSRKASDIQ--PISCDF 180
            IF +Y DS ++    IQKFALRFST +    FV      IKG+   ++  Q     CD 
Sbjct: 121 AIFVTYMDSANQ----IQKFALRFSTCDAALEFVEALKEKIKGLKEASTQNQKNKTRCD- 180

Query: 181 ESHISTHSELLSPNRPSDSL-----SEELSNSTVLQPYTPEM 211
              +S  S+      PSD++      +E +    L  Y PEM
Sbjct: 181 ---VSFQSDY----NPSDAIIPRATQKEPNMVRPLNSYVPEM 208

BLAST of Lsi08G016510 vs. NCBI nr
Match: gi|1012099161|ref|XP_015956892.1| (PREDICTED: uncharacterized protein LOC107481188 [Arachis duranensis])

HSP 1 Score: 244.2 bits (622), Expect = 3.0e-61
Identity = 144/297 (48.48%), Postives = 190/297 (63.97%), Query Frame = 1

Query: 1   MAGFEGTAQSKEQAEMSFGAIRDQWEIQFSRFVWHPSSS-STSTNLRPLLPYARNRLPRG 60
           MAG      S +  + S   IRDQWEI F+RFV +P+SS S+S  L PL P  RNR PRG
Sbjct: 1   MAGSLAVIPSND-VDNSATTIRDQWEICFARFVPYPTSSPSSSAGLLPLPPRLRNRSPRG 60

Query: 61  TWISSSSTVFLQLLHHCSTSDMILVVRLRDNILEEHFLSKLHFSWPQVSCVSGFPARGTR 120
            WISS S  FL+LL   S  D+IL V    ++LEEH++SKLHFSWPQVSCVSGFPARG R
Sbjct: 61  NWISSPSVAFLRLLPDLSHRDVILTVSFNASLLEEHYVSKLHFSWPQVSCVSGFPARGIR 120

Query: 121 TIFGSYRDSVDEASRYIQKFALRFSTSNETDTFVNIIKGMSRKASDIQPISCDFESHIST 180
           T+  S+RDSV E    IQKFALRF +  E  +FVNI+KG+ +   D +P++ DF S IS+
Sbjct: 121 TVLVSFRDSVGE----IQKFALRFPSLYEAQSFVNILKGLLKDEKDPEPLNTDFGSEISS 180

Query: 181 HSELLSPNRPSDSLSEELSNSTVLQPYTPEMPLSLRDTVETYSWSQENNAHFD-HLDSIF 240
            SE +S N+     SEE S  T +  Y P+MP S++   +  S +QE  A     +  I 
Sbjct: 181 QSEFVSSNKHCHRPSEEASFMTPVDTYKPQMPRSIKTEEKQSSGTQEMEAPPGFSIAGIL 240

Query: 241 AALPPSFTSMLSNCSDVKRDQTATQSSAAKDVDLKSQIMKCMEDSSFQGTAISTLKL 296
            ALPPSFT++L +CS++      TQ  A+++++LKSQI++ MEDSSFQ   +   K+
Sbjct: 241 PALPPSFTTLLMDCSEINH----TQPIASQEIELKSQIVRYMEDSSFQDMLVKVEKV 288

BLAST of Lsi08G016510 vs. NCBI nr
Match: gi|1021500800|ref|XP_016193615.1| (PREDICTED: protein POOR HOMOLOGOUS SYNAPSIS 1 [Arachis ipaensis])

HSP 1 Score: 241.9 bits (616), Expect = 1.5e-60
Identity = 143/297 (48.15%), Postives = 190/297 (63.97%), Query Frame = 1

Query: 1   MAGFEGTAQSKEQAEMSFGAIRDQWEIQFSRFVWHPSSS-STSTNLRPLLPYARNRLPRG 60
           MAG      S +  + S   IRDQWEI F+RFV +P+SS S+S  L PL P  R+R PRG
Sbjct: 1   MAGSLAVIPSND-VDNSATTIRDQWEICFARFVPYPTSSPSSSAGLLPLPPRLRSRSPRG 60

Query: 61  TWISSSSTVFLQLLHHCSTSDMILVVRLRDNILEEHFLSKLHFSWPQVSCVSGFPARGTR 120
            WISS S  FL+LL   S  D+IL V    ++LEEH++SKLHFSWPQVSCVSGFPARG R
Sbjct: 61  NWISSPSVAFLRLLPDLSHRDVILTVSFNASLLEEHYVSKLHFSWPQVSCVSGFPARGIR 120

Query: 121 TIFGSYRDSVDEASRYIQKFALRFSTSNETDTFVNIIKGMSRKASDIQPISCDFESHIST 180
           T+  S+RDSV E    IQKFALRF +  E  +FVNI+KG+ +   D +P++ DF S IS+
Sbjct: 121 TVLVSFRDSVGE----IQKFALRFPSLYEAQSFVNILKGLLKDEKDPEPLNTDFGSEISS 180

Query: 181 HSELLSPNRPSDSLSEELSNSTVLQPYTPEMPLSLRDTVETYSWSQENNAHFD-HLDSIF 240
            SE +S N+     SEE S  T +  Y P+MP S++   +  S +QE  A     +  I 
Sbjct: 181 QSEFVSSNKHCHRPSEEASFMTPVDTYKPQMPRSIKTEEKQPSGTQEMEAPPGFSIAGIL 240

Query: 241 AALPPSFTSMLSNCSDVKRDQTATQSSAAKDVDLKSQIMKCMEDSSFQGTAISTLKL 296
            ALPPSFT++L +CS++      TQ  A+++++LKSQI++ MEDSSFQ   +   K+
Sbjct: 241 PALPPSFTTLLMDCSEINH----TQPIASQEIELKSQIVRYMEDSSFQDMLVKVEKV 288

BLAST of Lsi08G016510 vs. NCBI nr
Match: gi|645230548|ref|XP_008221985.1| (PREDICTED: uncharacterized protein LOC103321910 [Prunus mume])

HSP 1 Score: 239.6 bits (610), Expect = 7.3e-60
Identity = 139/283 (49.12%), Postives = 181/283 (63.96%), Query Frame = 1

Query: 20  AIRDQWEIQFSRFVWHPSSS--STSTNLRPLLPYARNRLPRGTWISSSSTVFLQLLHHCS 79
           A+R+QWE+ F+RF  +P     ST  +L PL P  R R P   WISSSS   LQL    S
Sbjct: 47  AVREQWEVHFARFFPYPPPPIISTCPDLVPLDPKYRRRRPLDRWISSSSLARLQLARDHS 106

Query: 80  TSDMILVVRLRDNILEEHFLSKLHFSWPQVSCVSGFPARGTRTIFGSYRDSVDEASRYIQ 139
            SD++L V   D ILEEH++SKLHF WPQVSC+SGF ARGTR IF SYRD  DE    IQ
Sbjct: 107 NSDVVLTVGFADKILEEHYVSKLHFIWPQVSCMSGFLARGTRAIFVSYRDCSDE----IQ 166

Query: 140 KFALRFSTSNETDTFVNIIKGMSRKASDIQPISCDFESHISTHSELLSPNRPSDSLSEEL 199
           KF  RF + +E + F+N +KG+ ++  D +P++ D  S IS+ SEL S NRP +   ++L
Sbjct: 167 KFGFRFLSLHEAEKFMNALKGICKEGMDTEPVNTDIGSEISSQSELTSSNRPLNPACKDL 226

Query: 200 SNSTVLQPYTPEM-PLSLRDTVETYSWSQENNAHFDHLDSIFAALPPSFTSMLSNCSDVK 259
           +  T +Q YTP++ P  L +  E YS +QE     D+L S FAALPPSFTS LSNC  V 
Sbjct: 227 TTMTPVQTYTPKISPSLLNNEAEQYSCTQEFTP-IDNLQSNFAALPPSFTSFLSNCGRVV 286

Query: 260 RDQTATQSSAAKDVDLKSQIMKCMEDSSFQGTAISTLKLNLQI 300
            +Q ATQ + +++VDLKSQI + MED+SFQ       K+  +I
Sbjct: 287 -EQVATQPTGSQEVDLKSQIARYMEDASFQDMLFQVEKVISEI 323

BLAST of Lsi08G016510 vs. NCBI nr
Match: gi|1009153431|ref|XP_015894631.1| (PREDICTED: uncharacterized protein LOC107428583 [Ziziphus jujuba])

HSP 1 Score: 238.0 bits (606), Expect = 2.1e-59
Identity = 137/292 (46.92%), Postives = 191/292 (65.41%), Query Frame = 1

Query: 8   AQSKEQAEMSFGAIRDQWEIQFSRFVWHPSSSSTSTNLRPLLPYARNRLPRGTWISSSST 67
           ++   + +++ G   ++WE++FSRF  +P  +ST  +L PL    RNR P GTWISSSS 
Sbjct: 15  SEQTPEKKLAIGGGGERWEVEFSRFFNYPPMTSTWPDLVPLPSKVRNRRPSGTWISSSSH 74

Query: 68  VFLQLLHHCSTSD-MILVVRLRDNILEEHFLSKLHFSWPQVSCVSGFPARGTRTIFGSYR 127
           V LQLL H S SD ++L V  RD+ILEEH++SKLHFSWPQVSC+SGFPARGTR +F SYR
Sbjct: 75  VLLQLLPHPSNSDDVVLRVYFRDSILEEHYVSKLHFSWPQVSCLSGFPARGTRAVFASYR 134

Query: 128 DSVDEASRYIQKFALRFSTSNETDTFVNIIKGMSRKASDIQPISCDFESHISTHSELLSP 187
           D V E    +QKFALRFST  ET+ FV+ +K + +   D   ++C F S IS+ SE +S 
Sbjct: 135 DGVGE----VQKFALRFSTIYETERFVSALKEIFKVERDTGLVTCGFGSEISSQSEFISS 194

Query: 188 NRPSDSLSEELSNSTVLQPYTPEMPLSLRDTVETYSWSQENNAHFDHLDSIFAALPPSFT 247
           N      +E+ + +   + YTPE P S  +  E YS +++      + D +F+ALPPSFT
Sbjct: 195 NTTLYRANEDFNVTNPAETYTPEFPPSSNNLAEQYSCTKDTVPPC-NFDVLFSALPPSFT 254

Query: 248 SMLSNC-SDVKRDQTATQS--SAAKDVDLKSQIMKCMEDSSFQGTAISTLKL 296
           S++ NC SDV  +QTA Q   S  ++V++KSQI++ MEDS+FQ   +   K+
Sbjct: 255 SLMENCSSDV--EQTAAQPILSQPQEVNIKSQIVRYMEDSTFQDMLVKVEKV 299

BLAST of Lsi08G016510 vs. NCBI nr
Match: gi|596296432|ref|XP_007227171.1| (hypothetical protein PRUPE_ppa022200mg [Prunus persica])

HSP 1 Score: 237.7 bits (605), Expect = 2.8e-59
Identity = 137/283 (48.41%), Postives = 180/283 (63.60%), Query Frame = 1

Query: 20  AIRDQWEIQFSRFVWHPSSSSTST--NLRPLLPYARNRLPRGTWISSSSTVFLQLLHHCS 79
           A+R+QWE+ F+ F  +P    TST  +L PL P  R R P   WISSSS   LQL    S
Sbjct: 27  AVREQWEVHFALFFPYPPPPITSTCPDLVPLDPKYRRRRPLDRWISSSSLARLQLARDHS 86

Query: 80  TSDMILVVRLRDNILEEHFLSKLHFSWPQVSCVSGFPARGTRTIFGSYRDSVDEASRYIQ 139
            S+++L V   D ILEEH++SKLHF WPQVSC+SGFPARGTR IF SYRD  +E    IQ
Sbjct: 87  NSEVVLTVGFADKILEEHYVSKLHFIWPQVSCMSGFPARGTRAIFVSYRDCSEE----IQ 146

Query: 140 KFALRFSTSNETDTFVNIIKGMSRKASDIQPISCDFESHISTHSELLSPNRPSDSLSEEL 199
           KF  RF +  E + F+N +KG+ ++  D +P++ D  S IS+ SEL S NRP +   ++L
Sbjct: 147 KFGFRFLSLQEAEKFMNALKGICKEGMDTEPVNTDVGSEISSQSELTSSNRPLNPACKDL 206

Query: 200 SNSTVLQPYTPEM-PLSLRDTVETYSWSQENNAHFDHLDSIFAALPPSFTSMLSNCSDVK 259
           +  T +Q YTP++ P  L +  E YS +QE     D+  S FAALPPSFTS LSNC  V 
Sbjct: 207 TTMTPVQTYTPKISPSLLNNEAEQYSCTQEFTP-IDNFQSNFAALPPSFTSFLSNCGPVV 266

Query: 260 RDQTATQSSAAKDVDLKSQIMKCMEDSSFQGTAISTLKLNLQI 300
            +Q ATQ + +++VDLKSQI + MED+SFQ       K+  +I
Sbjct: 267 -EQVATQPTGSQEVDLKSQIARYMEDASFQDMLFQVEKVISEI 303

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
POHS1_ARATH7.8e-3041.44Protein POOR HOMOLOGOUS SYNAPSIS 1 OS=Arabidopsis thaliana GN=PHS1 PE=1 SV=1[more]
PHS1_MAIZE1.6e-1929.75Protein POOR HOMOLOGOUS SYNAPSIS 1 OS=Zea mays GN=PHS1 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
M5Y8M5_PRUPE1.9e-5948.41Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022200mg PE=4 SV=1[more]
A0A061E6E2_THECC4.9e-5544.80Poor ous synapsis 1, putative isoform 1 OS=Theobroma cacao GN=TCM_010474 PE=4 SV... [more]
A0A067JUY7_JATCU1.9e-5445.58Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17801 PE=4 SV=1[more]
V7CA31_PHAVU1.0e-5244.44Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G063800g PE=4 SV=1[more]
A0A061E6I9_THECC1.0e-5243.40Poor ous synapsis 1, putative isoform 2 OS=Theobroma cacao GN=TCM_010474 PE=4 SV... [more]
Match NameE-valueIdentityDescription
AT1G10710.14.4e-3141.44 poor homologous synapsis 1[more]
Match NameE-valueIdentityDescription
gi|1012099161|ref|XP_015956892.1|3.0e-6148.48PREDICTED: uncharacterized protein LOC107481188 [Arachis duranensis][more]
gi|1021500800|ref|XP_016193615.1|1.5e-6048.15PREDICTED: protein POOR HOMOLOGOUS SYNAPSIS 1 [Arachis ipaensis][more]
gi|645230548|ref|XP_008221985.1|7.3e-6049.12PREDICTED: uncharacterized protein LOC103321910 [Prunus mume][more]
gi|1009153431|ref|XP_015894631.1|2.1e-5946.92PREDICTED: uncharacterized protein LOC107428583 [Ziziphus jujuba][more]
gi|596296432|ref|XP_007227171.1|2.8e-5948.41hypothetical protein PRUPE_ppa022200mg [Prunus persica][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi08G016510.1Lsi08G016510.1mRNA


The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi08G016510Cucumber (Chinese Long) v3cuclsiB096
Lsi08G016510Cucumber (Chinese Long) v3cuclsiB155
Lsi08G016510Cucumber (Chinese Long) v3cuclsiB411
Lsi08G016510Watermelon (97103) v2lsiwmbB438
Lsi08G016510Wax gourdlsiwgoB619
Lsi08G016510Bottle gourd (USVL1VR-Ls)lsilsiB149
Lsi08G016510Cucumber (Gy14) v1cgylsiB468
Lsi08G016510Cucumber (Gy14) v1cgylsiB637
Lsi08G016510Cucurbita maxima (Rimu)cmalsiB394
Lsi08G016510Cucurbita maxima (Rimu)cmalsiB397
Lsi08G016510Cucurbita maxima (Rimu)cmalsiB704
Lsi08G016510Cucurbita maxima (Rimu)cmalsiB739
Lsi08G016510Cucurbita moschata (Rifu)cmolsiB379
Lsi08G016510Cucurbita moschata (Rifu)cmolsiB698
Lsi08G016510Cucurbita moschata (Rifu)cmolsiB731
Lsi08G016510Cucurbita pepo (Zucchini)cpelsiB045
Lsi08G016510Cucurbita pepo (Zucchini)cpelsiB100
Lsi08G016510Cucurbita pepo (Zucchini)cpelsiB383
Lsi08G016510Wild cucumber (PI 183967)cpilsiB083
Lsi08G016510Wild cucumber (PI 183967)cpilsiB141
Lsi08G016510Wild cucumber (PI 183967)cpilsiB392
Lsi08G016510Cucumber (Chinese Long) v2culsiB085
Lsi08G016510Cucumber (Chinese Long) v2culsiB142
Lsi08G016510Cucumber (Chinese Long) v2culsiB388
Lsi08G016510Melon (DHL92) v3.5.1lsimeB462
Lsi08G016510Melon (DHL92) v3.5.1lsimeB465
Lsi08G016510Melon (DHL92) v3.5.1lsimeB469
Lsi08G016510Watermelon (Charleston Gray)lsiwcgB433
Lsi08G016510Watermelon (Charleston Gray)lsiwcgB436
Lsi08G016510Watermelon (97103) v1lsiwmB483
Lsi08G016510Watermelon (97103) v1lsiwmB498
Lsi08G016510Cucumber (Gy14) v2cgyblsiB129
Lsi08G016510Cucumber (Gy14) v2cgyblsiB355
Lsi08G016510Melon (DHL92) v3.6.1lsimedB481
Lsi08G016510Melon (DHL92) v3.6.1lsimedB484
Lsi08G016510Melon (DHL92) v3.6.1lsimedB489
Lsi08G016510Silver-seed gourdcarlsiB219
Lsi08G016510Silver-seed gourdcarlsiB454
Lsi08G016510Silver-seed gourdcarlsiB665