Lsi08G016510 (gene) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: five_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.TTGAAGAGCGGGAGAACTAGAAGGATCGCTGAGAGAGGGAAGAATGGCGGGATTTGAAGGCACGGCGCAGAGCAAAGAGCAAGCGGAAATGTCATTTGGTGCCATTAGAGACCAGTGGGAAATTCAATTCTCTCGCTTCGTTTGGCATCCAAGTAGCAGCTCCACCAGCACCAACCTCCGTCCTCTCCTTCCCTATGCCCGAAATCGCCTGCCTCGAGGCACATGGATCTCTTCGTCTTCCACTGTTTTCCTACAACTCCTCCACCATTGCTCCACCTCTGACATGATTCTTGTCGTACGCTTACGAGATAACATCCTTGTGAGTTTCTACTCGCTATCTGTATGTACAAGTACATTTTTCAGATGCCAAACCTTTTTATTCCGCTTAATAGTATACGTTCGCTTCTTCAATTTCCTCGATCTCTATGTTTCATGCATTAAATGAACTTCTTATTGCATTTCTTTAAATTCATGTAGTTTCTTATCGATGCCCCTGAAATCAACCAGATCTTATGCTAGTCTCCGCCTAAGGAGTTGGTCTCTTGTTTGTCTTCTTCTTTTTCCTCACTTGCCCTCGCTGCATGGATGATTGCCTTCGATGCTGCTTGTTGATTTCATTCTATACGCTTAGTCTGTAGTTCAAGTGCAGCAACTTATATCGAGTCCAGTCGTCTAACACAACAGTATTCTGTGAAAATACCAATCTAAGCCTCAATTTCTATTAGTTGGATGAGTTAATCGCAATGGATGAAGTATATCTTATTTGCATACTGATGTAGGAAGAGCACTTCCTTTCCAAGCTGCATTTCTCATGGCCTCAGGTGTCCTGTGTCTCTGGTTTCCCAGCCAGAGGCACCAGAACTATTTTTGGAAGTTACAGAGATTCAGTTGACGAGGCAAGTCGTTATGTATTCATCGAGATTTTGTTAATTTTTGTGGTGCCATGGGATTTGAAATGAAGTAGTTTTCTGAGGACGAGTATGACTTGTTTTTTCTTGGCAGATCCAAAAGTTTGCCCTAAGATTTTCAACATCCAACGAAACTGATACGTTTGTGAACATTATCAAGGTATTTAATATGAATTCCTTTTATGGATAGGTTTAATGGAAGATATTTCTATTCTAAAAGCATTTCTATTCTAAAAGCTTACTGCTGCTATTATGCTATTCTCCCGTTTAGGGAATGTCAAGGAAAGCAAGTGATATACAGCCAATAAGCTGCGACTTCGAGTCTCATATTTCAACACACTCTGAGTTATTATCGCCAAATAGACCGTCTGATAGGTGAATGGAAATTCTCCAATAATCTAATGCATTATTTTATTTTTATAGTTAGAGAGAGAGAGAGATCTGATGTATATTTTATGTTTCTAGCCTTTCTGAAGAATTGAGCAATTCTACCGTCCTCCAGCCTTACACCCCTGAAATGCCTTTGAGCTTACGAGATACTGTAGAGACATATTCATGGTCTCAGGAAAATAATGCACATTTTGACCACTTAGATAGCATCTTTGCAGCCTTGCCTCCCAGTTTTACTTCTATGCTATCAAACTGTTCAGATGTCAAAAGAGGTAGATGCTATGACAAATTTAGAACAAAATATCTTTCAAATCATCGTATTAACCAATTTCGTTCGCTATAAGATCAAACTGCAACTCAGTCATCTGCTGCAAAGGATGTTGATCTAAAGTCTCAAATCATGGTATGTTGAATTGTTATCAAATGAATTTCTTTTTGTGCTGCTCGGTATTAGGCTGTTTTGACATTGGAAACTTGACTTGAACTTAATATTGTACACTTTATGATTGAATTTGTTTTGGAACAGAAATGTATGGAGGACTCTTCCTTTCAAGGTACGGCTATATCAACACTTAAATTAAACTTGCAAATCTTTCCATGGCCTGCACTTTAG TTGAAGAGCGGGAGAACTAGAAGGATCGCTGAGAGAGGGAAGAATGGCGGGATTTGAAGGCACGGCGCAGAGCAAAGAGCAAGCGGAAATGTCATTTGGTGCCATTAGAGACCAGTGGGAAATTCAATTCTCTCGCTTCGTTTGGCATCCAAGTAGCAGCTCCACCAGCACCAACCTCCGTCCTCTCCTTCCCTATGCCCGAAATCGCCTGCCTCGAGGCACATGGATCTCTTCGTCTTCCACTGTTTTCCTACAACTCCTCCACCATTGCTCCACCTCTGACATGATTCTTGTCGTACGCTTACGAGATAACATCCTTGAAGAGCACTTCCTTTCCAAGCTGCATTTCTCATGGCCTCAGGTGTCCTGTGTCTCTGGTTTCCCAGCCAGAGGCACCAGAACTATTTTTGGAAGTTACAGAGATTCAGTTGACGAGGCAAGTCGTTATATCCAAAAGTTTGCCCTAAGATTTTCAACATCCAACGAAACTGATACGTTTGTGAACATTATCAAGGGAATGTCAAGGAAAGCAAGTGATATACAGCCAATAAGCTGCGACTTCGAGTCTCATATTTCAACACACTCTGAGTTATTATCGCCAAATAGACCGTCTGATAGCCTTTCTGAAGAATTGAGCAATTCTACCGTCCTCCAGCCTTACACCCCTGAAATGCCTTTGAGCTTACGAGATACTGTAGAGACATATTCATGGTCTCAGGAAAATAATGCACATTTTGACCACTTAGATAGCATCTTTGCAGCCTTGCCTCCCAGTTTTACTTCTATGCTATCAAACTGTTCAGATGTCAAAAGAGATCAAACTGCAACTCAGTCATCTGCTGCAAAGGATGTTGATCTAAAGTCTCAAATCATGAAATGTATGGAGGACTCTTCCTTTCAAGGTACGGCTATATCAACACTTAAATTAAACTTGCAAATCTTTCCATGGCCTGCACTTTAG ATGGCGGGATTTGAAGGCACGGCGCAGAGCAAAGAGCAAGCGGAAATGTCATTTGGTGCCATTAGAGACCAGTGGGAAATTCAATTCTCTCGCTTCGTTTGGCATCCAAGTAGCAGCTCCACCAGCACCAACCTCCGTCCTCTCCTTCCCTATGCCCGAAATCGCCTGCCTCGAGGCACATGGATCTCTTCGTCTTCCACTGTTTTCCTACAACTCCTCCACCATTGCTCCACCTCTGACATGATTCTTGTCGTACGCTTACGAGATAACATCCTTGAAGAGCACTTCCTTTCCAAGCTGCATTTCTCATGGCCTCAGGTGTCCTGTGTCTCTGGTTTCCCAGCCAGAGGCACCAGAACTATTTTTGGAAGTTACAGAGATTCAGTTGACGAGGCAAGTCGTTATATCCAAAAGTTTGCCCTAAGATTTTCAACATCCAACGAAACTGATACGTTTGTGAACATTATCAAGGGAATGTCAAGGAAAGCAAGTGATATACAGCCAATAAGCTGCGACTTCGAGTCTCATATTTCAACACACTCTGAGTTATTATCGCCAAATAGACCGTCTGATAGCCTTTCTGAAGAATTGAGCAATTCTACCGTCCTCCAGCCTTACACCCCTGAAATGCCTTTGAGCTTACGAGATACTGTAGAGACATATTCATGGTCTCAGGAAAATAATGCACATTTTGACCACTTAGATAGCATCTTTGCAGCCTTGCCTCCCAGTTTTACTTCTATGCTATCAAACTGTTCAGATGTCAAAAGAGATCAAACTGCAACTCAGTCATCTGCTGCAAAGGATGTTGATCTAAAGTCTCAAATCATGAAATGTATGGAGGACTCTTCCTTTCAAGGTACGGCTATATCAACACTTAAATTAAACTTGCAAATCTTTCCATGGCCTGCACTTTAG MAGFEGTAQSKEQAEMSFGAIRDQWEIQFSRFVWHPSSSSTSTNLRPLLPYARNRLPRGTWISSSSTVFLQLLHHCSTSDMILVVRLRDNILEEHFLSKLHFSWPQVSCVSGFPARGTRTIFGSYRDSVDEASRYIQKFALRFSTSNETDTFVNIIKGMSRKASDIQPISCDFESHISTHSELLSPNRPSDSLSEELSNSTVLQPYTPEMPLSLRDTVETYSWSQENNAHFDHLDSIFAALPPSFTSMLSNCSDVKRDQTATQSSAAKDVDLKSQIMKCMEDSSFQGTAISTLKLNLQIFPWPAL
BLAST of Lsi08G016510 vs. Swiss-Prot
Match: POHS1_ARATH (Protein POOR HOMOLOGOUS SYNAPSIS 1 OS=Arabidopsis thaliana GN=PHS1 PE=1 SV=1) HSP 1 Score: 132.5 bits (332), Expect = 7.8e-30 Identity = 92/222 (41.44%), Postives = 125/222 (56.31%), Query Frame = 1
BLAST of Lsi08G016510 vs. Swiss-Prot
Match: PHS1_MAIZE (Protein POOR HOMOLOGOUS SYNAPSIS 1 OS=Zea mays GN=PHS1 PE=1 SV=1) HSP 1 Score: 98.2 bits (243), Expect = 1.6e-19 Identity = 72/242 (29.75%), Postives = 121/242 (50.00%), Query Frame = 1
BLAST of Lsi08G016510 vs. TrEMBL
Match: M5Y8M5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022200mg PE=4 SV=1) HSP 1 Score: 237.7 bits (605), Expect = 1.9e-59 Identity = 137/283 (48.41%), Postives = 180/283 (63.60%), Query Frame = 1
BLAST of Lsi08G016510 vs. TrEMBL
Match: A0A061E6E2_THECC (Poor ous synapsis 1, putative isoform 1 OS=Theobroma cacao GN=TCM_010474 PE=4 SV=1) HSP 1 Score: 223.0 bits (567), Expect = 4.9e-55 Identity = 125/279 (44.80%), Postives = 180/279 (64.52%), Query Frame = 1
BLAST of Lsi08G016510 vs. TrEMBL
Match: A0A067JUY7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17801 PE=4 SV=1) HSP 1 Score: 221.1 bits (562), Expect = 1.9e-54 Identity = 134/294 (45.58%), Postives = 182/294 (61.90%), Query Frame = 1
BLAST of Lsi08G016510 vs. TrEMBL
Match: V7CA31_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_003G063800g PE=4 SV=1) HSP 1 Score: 215.3 bits (547), Expect = 1.0e-52 Identity = 124/279 (44.44%), Postives = 182/279 (65.23%), Query Frame = 1
BLAST of Lsi08G016510 vs. TrEMBL
Match: A0A061E6I9_THECC (Poor ous synapsis 1, putative isoform 2 OS=Theobroma cacao GN=TCM_010474 PE=4 SV=1) HSP 1 Score: 215.3 bits (547), Expect = 1.0e-52 Identity = 125/288 (43.40%), Postives = 180/288 (62.50%), Query Frame = 1
BLAST of Lsi08G016510 vs. TAIR10
Match: AT1G10710.1 (AT1G10710.1 poor homologous synapsis 1) HSP 1 Score: 132.5 bits (332), Expect = 4.4e-31 Identity = 92/222 (41.44%), Postives = 125/222 (56.31%), Query Frame = 1
BLAST of Lsi08G016510 vs. NCBI nr
Match: gi|1012099161|ref|XP_015956892.1| (PREDICTED: uncharacterized protein LOC107481188 [Arachis duranensis]) HSP 1 Score: 244.2 bits (622), Expect = 3.0e-61 Identity = 144/297 (48.48%), Postives = 190/297 (63.97%), Query Frame = 1
BLAST of Lsi08G016510 vs. NCBI nr
Match: gi|1021500800|ref|XP_016193615.1| (PREDICTED: protein POOR HOMOLOGOUS SYNAPSIS 1 [Arachis ipaensis]) HSP 1 Score: 241.9 bits (616), Expect = 1.5e-60 Identity = 143/297 (48.15%), Postives = 190/297 (63.97%), Query Frame = 1
BLAST of Lsi08G016510 vs. NCBI nr
Match: gi|645230548|ref|XP_008221985.1| (PREDICTED: uncharacterized protein LOC103321910 [Prunus mume]) HSP 1 Score: 239.6 bits (610), Expect = 7.3e-60 Identity = 139/283 (49.12%), Postives = 181/283 (63.96%), Query Frame = 1
BLAST of Lsi08G016510 vs. NCBI nr
Match: gi|1009153431|ref|XP_015894631.1| (PREDICTED: uncharacterized protein LOC107428583 [Ziziphus jujuba]) HSP 1 Score: 238.0 bits (606), Expect = 2.1e-59 Identity = 137/292 (46.92%), Postives = 191/292 (65.41%), Query Frame = 1
BLAST of Lsi08G016510 vs. NCBI nr
Match: gi|596296432|ref|XP_007227171.1| (hypothetical protein PRUPE_ppa022200mg [Prunus persica]) HSP 1 Score: 237.7 bits (605), Expect = 2.8e-59 Identity = 137/283 (48.41%), Postives = 180/283 (63.60%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |