Lsi08G015560 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi08G015560
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr08 : 23618389 .. 23620704 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTGTGTTGTGCGCTATGGGCCAAAATTGGCCCCCGGTTTCATATTTCGATATATAAACGTTGAGAATCTGAGACATAATTTTTCAGAAAAGCAATTTGTTAGGTAGCAGCCATATTCAGCAACAAGAAAACAAGAAGTAATCCAATGTCCAGAGGCAGAACTGACCTGGTTTTTGTAAACAAGGTAGGCAAGAAAAAAGTAAAACAGCACGAAGGGGGTGATGAAAGGAGCCAAGATGGAACAAGTGAAGCCCAAGAAACCAAAGAGGAGGACCCGAGGAACTTCGGTGTGATATGGAAATTTAAGAGGTCCATAAAAGGGTTCATTCTTGATTCTAAGTATCCATCTTCTGATAAAGTTGCACGTAAGAGGAAAAATTTGCATAACTTCACAAGACAAACTTGCCCACCCAGATGATAGAACATAAGTCAAAAAGAAACTAGCCTGCATAAAATTGAGAAAACGTCATCAAAAGTATGTGCACTTAGAGTTCAAAAACCGAGCAGACCTCAGCACAAGTTGAACACTTTTCAGATGTACTCACTTCAATTCGATAACTTCAAATGAAATGTAAGGGAACATAATCAAATAAAGCAAGTGTGTTGTTTATCACCTGTGCTGGTACTGCTTTGCCAAATTGGGCAGGTATGTCCTTTACACTGGAAAAGACACTCAATGCCTGGATAACAGACCCGGCAAATACGTTAAAGAAAAAGACGTTCCAGATCATGAAGTATAAGACTTTAATGCATGCACTCCTTTTCCTCTCACTGCGAGAAACAGATCCCTCCAGGGCTGAAAATAACATCATAGTAGGTGGAACCAGATACGTAAAAAATATCAATATGACGCTTGGTAAGTAACCCGTCACCAGTTCGCTCATATATTTCCTGCATAACGACACTGAGTAAGTTTCCTTGTATTGATGTTCGTATGACCAATAAGCAAATCTTGCACTTACTTTTTCAAGAGGCCTCTAAGGAAGGGGAATGTCCTCTGTAGTTGATCCAGTTGCGTCATACCTTGAACGAGTGTTACTGGAAACACAAACAGGAGCATGATTCCGGCAGCAGCGACCAACGTTCCTATCTTACGAATCCAAAGTTGTCCATAACGTATAGAAAGATTTGACCAATAAACATCATGAGGTTCTGGAGCTAAGCTTGTTGCCCATGACATAGGATTTGCTGACTGAAGAACGTTCGAAGCCATATGCGCAGCATATCGAGTCTTGAAGAATACAAAAGCAGCGGAACACTCCTAATTTAGAAAACAAAAGTTGTCTACACGTTACATAGTAATCCTATGAATGATCAAGAAACCAAACAAAGATCCATTTTGGAAGGGTTTTTTTCATTTAGATATAGCAGATCTCTAACCTTTTCTCCAGCAACCAGGTCTATATTACCATATAGTGTTTTGTCCTTCACACTATCATTTACACTAGGGAGAATTGTAAAAGAATTTGTTGACCCTGAACAAAAACAGCCTCCTTTTAACTTCTGACAATGCATTTCGACCGAATTTTCCTTCATAATGTTGTACATTTTCTCTGCATCATTCTGAAAATTAACTCTGTCATGAACTTCAAAAAGTGAACAAAGAAGCATCTCAAGAGTCAAAGAGTTTAAAGAAATAAGTTCACCTCTCACCGGCAACAAAATAAGTATCTTATATGCATACCATCAAAAAGATAAATTTGGCAGCTAAATTTACATTAAAACACATGAAAGGAATCCTTTATGGATCTTTATTCTTAGTAATACAAAAAACAATTCATCCGTGTTTTCTCTAATTTGAGTTTCAACATCCGGACAGTCAATAAAATGATGTTCATAACATGGTCCTATACTTGCTTCATCACATTCTAATCCATTTTGATGCCATTTTAATGGCGCCCCCCTTCAAAGCATTAGTACCATATGATCCATCCAACAGTCAATCTACTTTTAATGATCCATTTTGTCAAATATATAGTTTGATTATTCTATTGGAAGCGAATTAGATAAACATTGACGGCGTACTTATCTTGCTAATTCCTTTAAGCTCCAAATGAAAAATCGAGTATATAACATATGTTAAATGGTCTGTACCCATATAGTAATGAAGGAAATGAACTTAAAAGCAAGAAGACTACAAGAATTTGAAAATACATCTAGGGAACCAAAATAAATTGATGATGAAATGTGAATGAGTTGACACTATAATATATTAGTAGATACATACCAACAGTTTCTGTATGGTACCAGACCGATATATCATTTGGTGTGACAAGTAACTTGATGCATAGTAATTGGAGAAGAACTTCCTAA

mRNA sequence

ATGGTTGTAGCAGCCATATTCAGCAACAAGAAAACAAGAAGTAATCCAATGTCCAGAGGCAGAACTGACCTGGTTTTTGTAAACAAGGTAGGCAAGAAAAAAGTAAAACAGCACGAAGGGGGTGATGAAAGGAGCCAAGATGGAACAAGTGAAGCCCAAGAAACCAAAGAGGAGGACCCGAGGAACTTCGGTGTGATATGGAAATTTAAGAGGTCCATAAAAGGGTTCATTCTTGATTCTAAGTATCCATCTTCTGATAAAGTTGCACGTATGTCCTTTACACTGGAAAAGACACTCAATGCCTGGATAACAGACCCGGCAAATACGTTAAAGAAAAAGACGTTCCAGATCATGAAGTATAAGACTTTAATGCATGCACTCCTTTTCCTCTCACTGCGAGAAACAGATCCCTCCAGGGCTGAAAATAACATCATAGTAGGTGGAACCAGATACTTGATCCAGTTGCGTCATACCTTGAACGAGTGTTACTGGAAACACAAACAGGAGCATGATTCCGGCAGCAGCGACCAACGTTCCTATCTTACGAATCCAAAGTTGTCCATAACATACATACCAACAGTTTCTGTATGGTACCAGACCGATATATCATTTGGTGTGACAAGTAACTTGATGCATAGTAATTGGAGAAGAACTTCCTAA

Coding sequence (CDS)

ATGGTTGTAGCAGCCATATTCAGCAACAAGAAAACAAGAAGTAATCCAATGTCCAGAGGCAGAACTGACCTGGTTTTTGTAAACAAGGTAGGCAAGAAAAAAGTAAAACAGCACGAAGGGGGTGATGAAAGGAGCCAAGATGGAACAAGTGAAGCCCAAGAAACCAAAGAGGAGGACCCGAGGAACTTCGGTGTGATATGGAAATTTAAGAGGTCCATAAAAGGGTTCATTCTTGATTCTAAGTATCCATCTTCTGATAAAGTTGCACGTATGTCCTTTACACTGGAAAAGACACTCAATGCCTGGATAACAGACCCGGCAAATACGTTAAAGAAAAAGACGTTCCAGATCATGAAGTATAAGACTTTAATGCATGCACTCCTTTTCCTCTCACTGCGAGAAACAGATCCCTCCAGGGCTGAAAATAACATCATAGTAGGTGGAACCAGATACTTGATCCAGTTGCGTCATACCTTGAACGAGTGTTACTGGAAACACAAACAGGAGCATGATTCCGGCAGCAGCGACCAACGTTCCTATCTTACGAATCCAAAGTTGTCCATAACATACATACCAACAGTTTCTGTATGGTACCAGACCGATATATCATTTGGTGTGACAAGTAACTTGATGCATAGTAATTGGAGAAGAACTTCCTAA

Protein sequence

MVVAAIFSNKKTRSNPMSRGRTDLVFVNKVGKKKVKQHEGGDERSQDGTSEAQETKEEDPRNFGVIWKFKRSIKGFILDSKYPSSDKVARMSFTLEKTLNAWITDPANTLKKKTFQIMKYKTLMHALLFLSLRETDPSRAENNIIVGGTRYLIQLRHTLNECYWKHKQEHDSGSSDQRSYLTNPKLSITYIPTVSVWYQTDISFGVTSNLMHSNWRRTS
Homology
[Close]
BLAST of Lsi08G015560 vs. TrEMBL
Match: A0A0P0W177_ORYSJ (Os03g0673900 protein OS=Oryza sativa subsp. japonica GN=Os03g0673900 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 4.2e-08
Identity = 34/61 (55.74%), Postives = 39/61 (63.93%), Query Frame = 1 

Query: 91  MSFTLEKTLNAWITDPANTLKKKTFQIMKYKTLMHALLFLSLRETDPSRAENNIIVGGTR 150
           MSF L+      I +P  T  K TFQI+KY TL  ALLFLSL +T PS  E NI+VGGT 
Sbjct: 16  MSFGLDNAFTWLIAEPDRTFTKNTFQIVKYNTLQQALLFLSLWDTGPSNVEKNIMVGGTV 75

Query: 151 Y 152
           Y
Sbjct: 76  Y 76

[Close]
BLAST of Lsi08G015560 vs. NCBI nr
Match: gi|937910786|dbj|BAS85706.1| (Os03g0673900 [Oryza sativa Japonica Group])

HSP 1 Score: 66.6 bits (161), Expect = 6.1e-08
Identity = 34/61 (55.74%), Postives = 39/61 (63.93%), Query Frame = 1 

Query: 91  MSFTLEKTLNAWITDPANTLKKKTFQIMKYKTLMHALLFLSLRETDPSRAENNIIVGGTR 150
           MSF L+      I +P  T  K TFQI+KY TL  ALLFLSL +T PS  E NI+VGGT 
Sbjct: 16  MSFGLDNAFTWLIAEPDRTFTKNTFQIVKYNTLQQALLFLSLWDTGPSNVEKNIMVGGTV 75

Query: 151 Y 152
           Y
Sbjct: 76  Y 76

The following BLAST results are available for this feature:
BLAST of Lsi08G015560 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi08G015560 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0P0W177_ORYSJ4.2e-0855.74Os03g0673900 protein OS=Oryza sativa subsp. japonica GN=Os03g0673900 PE=4 SV=1[more]
BLAST of Lsi08G015560 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi08G015560 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|937910786|dbj|BAS85706.1|6.1e-0855.74Os03g0673900 [Oryza sativa Japonica Group][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi08G015560.1Lsi08G015560.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi08G015560Wax gourdlsiwgoB591
Lsi08G015560Wax gourdlsiwgoB613
Lsi08G015560Wax gourdlsiwgoB627
Lsi08G015560Bottle gourd (USVL1VR-Ls)lsilsiB087
Lsi08G015560Bottle gourd (USVL1VR-Ls)lsilsiB148
Lsi08G015560Cucumber (Gy14) v1cgylsiB129
Lsi08G015560Cucumber (Gy14) v1cgylsiB571
Lsi08G015560Cucumber (Gy14) v1cgylsiB637
Lsi08G015560Cucurbita maxima (Rimu)cmalsiB032
Lsi08G015560Cucurbita maxima (Rimu)cmalsiB184
Lsi08G015560Cucurbita maxima (Rimu)cmalsiB454
Lsi08G015560Cucurbita maxima (Rimu)cmalsiB456
Lsi08G015560Cucurbita maxima (Rimu)cmalsiB621
Lsi08G015560Cucurbita maxima (Rimu)cmalsiB739
Lsi08G015560Cucurbita maxima (Rimu)cmalsiB809
Lsi08G015560Cucurbita moschata (Rifu)cmolsiB020
Lsi08G015560Cucurbita moschata (Rifu)cmolsiB175
Lsi08G015560Cucurbita moschata (Rifu)cmolsiB442
Lsi08G015560Cucurbita moschata (Rifu)cmolsiB609
Lsi08G015560Cucurbita moschata (Rifu)cmolsiB731
Lsi08G015560Cucurbita moschata (Rifu)cmolsiB795
Lsi08G015560Cucurbita pepo (Zucchini)cpelsiB067
Lsi08G015560Cucurbita pepo (Zucchini)cpelsiB100
Lsi08G015560Cucurbita pepo (Zucchini)cpelsiB409
Lsi08G015560Cucurbita pepo (Zucchini)cpelsiB477
Lsi08G015560Cucurbita pepo (Zucchini)cpelsiB644
Lsi08G015560Cucurbita pepo (Zucchini)cpelsiB685
Lsi08G015560Wild cucumber (PI 183967)cpilsiB141
Lsi08G015560Wild cucumber (PI 183967)cpilsiB316
Lsi08G015560Wild cucumber (PI 183967)cpilsiB482
Lsi08G015560Cucumber (Chinese Long) v2culsiB142
Lsi08G015560Cucumber (Chinese Long) v2culsiB317
Lsi08G015560Cucumber (Chinese Long) v2culsiB474
Lsi08G015560Melon (DHL92) v3.5.1lsimeB469
Lsi08G015560Melon (DHL92) v3.5.1lsimeB488
Lsi08G015560Melon (DHL92) v3.5.1lsimeB490
Lsi08G015560Watermelon (Charleston Gray)lsiwcgB425
Lsi08G015560Watermelon (Charleston Gray)lsiwcgB432
Lsi08G015560Watermelon (Charleston Gray)lsiwcgB438
Lsi08G015560Watermelon (97103) v1lsiwmB465
Lsi08G015560Watermelon (97103) v1lsiwmB482
Lsi08G015560Watermelon (97103) v1lsiwmB488
Lsi08G015560Cucumber (Gy14) v2cgyblsiB129
Lsi08G015560Cucumber (Gy14) v2cgyblsiB289
Lsi08G015560Cucumber (Gy14) v2cgyblsiB441
Lsi08G015560Melon (DHL92) v3.6.1lsimedB489
Lsi08G015560Melon (DHL92) v3.6.1lsimedB507
Lsi08G015560Melon (DHL92) v3.6.1lsimedB509
Lsi08G015560Silver-seed gourdcarlsiB003
Lsi08G015560Silver-seed gourdcarlsiB164
Lsi08G015560Silver-seed gourdcarlsiB295
Lsi08G015560Silver-seed gourdcarlsiB372
Lsi08G015560Silver-seed gourdcarlsiB415
Lsi08G015560Silver-seed gourdcarlsiB710
Lsi08G015560Cucumber (Chinese Long) v3cuclsiB155
Lsi08G015560Cucumber (Chinese Long) v3cuclsiB336
Lsi08G015560Cucumber (Chinese Long) v3cuclsiB504
Lsi08G015560Watermelon (97103) v2lsiwmbB422
Lsi08G015560Watermelon (97103) v2lsiwmbB435
Lsi08G015560Watermelon (97103) v2lsiwmbB437
Lsi08G015560Watermelon (97103) v2lsiwmbB444