Lsi08G012870 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi08G012870
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Ornithine decarboxylase
Location	chr08 : 21235955 .. 21238197 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCAAACTAAACTCTATCTTTTACCTCCCAAATTATTACTTGGTTCAATATCCAAAGTAATAACATTACTCATTCTCATGGTCATAGCCATGGAGGAAGGTGGTTACATACCGAGCTTGCAAATGGCTTCAGGGATCAAAGGGAAGAAAATTACTTGGATAAATAAAAATGGAATATTGGGTTTTGTTGAATCCATTATTTTGAGCCAAGAAGAAGCCAAAGAACCCTTTTACATACTTGACCTAGGACTCCTCAGCAATCTTGTCCATAACTGGACTCATAATCTTCCAATGATTCAGCCATATTACGCCGTCAAGTGTAACTCTAACACTGAATTTCTTGGTGCCATGGCTACTCTCGGCTCTAACTTTGACTGCGCCAGTCGAGCCGAGATCGAGTCCGTTATAGCTCTTGGTGTGTCGGCAGATCGAATTATCTTTGCCAACCCATGCAAGGCGGAGTCCCACATCAATTACGCTGCTAGCGTCGGTGTTAACTTGACGACTTTCGACTCTATAACTGAAGTAAGGAAGATCAAAAAATGTCACCCAAAATGCGCATTGCTAATCCGAATCAAAGCCGTAGATGATAGTACATCCCGATGTCCATTGAGCTCCAAGTATGGTGCACTCCCGGACGAGATAGAGTCGCTCCTACAAGCTGCTCAAGCTGCGAAACTCGATGTCATTGGCGTTTCTTTCCATATTGGAAGTGGAAGCAGGGATGCTTGCGCTTATCGCTTCGCCATAGCTACGGTCAAAGCAGTGTTTGATACTGCAGTTCGATTAGGGATGCCGAGAATGAAGGTCAGCATTGAGAAACAAATATACATTAAACTTATATTACTTGCTACTATGTTAAATATTCACTATTAATTTTTTTGTTAAATTATATAAAATATCCATAAACTTTATAATTCCTGTAAAAAATATCCGTAAACTTTAAAAAATATTGAACTTAAAAAATGTTAAAAAATATTCCTATTATATAAACAGAAACTGTTAATATCGATTTACTTCTCTATTTTCCCTTTTTTTTCTCATCTTTTTTTCCAATGCTCTCTTTTACTCCTCTTTTTGTTAATTATTTGACATTTGTTTATCTCAAAAGTTTCACAGGAATTTTAGGACTTAAATGTTTTAATAAAGTTGTACATTGAATGTGTATTAATAGTCAATTACATTTTTTTATTTGACTATTTATCATTGTGGTAAGGGGAGATTTTGGTTTTTGAAATTTGTGGGATTTTGTGTTTTAACTTAAAATTTTGGTGGCTAAGAAAATTGGTATAATAATTAGAAAAATAGGAGAAAAATGAGAATATCTATATAATTTGTTTAAAAACAGGTTCTTTTCGAATGCAAGAAAACTTCAGACACACTATACTAACGGGAGGGACATTTTTAACCTTTTTTTTTTCAAAACAAATAGAGTTATTTTTGTAAAGATGTATTAATAGTTGATGTTCACGTACTAATGGTGAGAAATGTGAGGATACTTTTGAACTTCTTTTTAAGGTTATTTTTGAAATTTTTGAAAGTTTATGAATATTTTTTTCAAACAAAAAATTTACCGTTTCTATCCAAAATTAACCGTAAATTAGGTATTTTTTAACTCTGTTTTTAAAGTTTTTTAAAAATTCAAAGGTATTTTTGACACAAAGTAAAAAGTTGAAGGGTATTTTTTATAAACTTTAATATATTTTTTTTATCACAGGTGCTTAATATCGGAGGCGGCTTCATGGCTGGCACACATTTTGACGCGGCGGTTGTGGCGATTAAAGAAGGAATCTCGGGGCACTTCTCGGAAGAAGAAGGGTTGATTATGATGGCGGAGCCAGGGCGGTATTTTGCAGAAAAATGCTTTACATTGGCAACGAACATAATCGGAAAGCGAGTGAGGGGAGATTTAAGAGAGTATTGGATAACTGATGGAGTATATGGCTCAATGAATTGCATTATCAACGATCACACGGCGGTTGTCACGTGCTCCCCATTAGCCGCCACGTCAAACCCTCAAAATCTGACGTGTACAAATGCTGAGGTGTACAAATCGACTGTGTTTGGACCCACATGCGATGCTTTAGATACAATTTCCACTGGTTATTGGCTACCGGATATGGAGGTGGATGATTGGTTGTTATTTCCTAACATGGGCGCTTACACGTCAGCAACAGGAACTAACTTCAATGGGTTTACCACCTCCTCAATACCCACCCATCTTGCTTACTCCAATCCTTTTTGA

mRNA sequence

TCAAACTAAACTCTATCTTTTACCTCCCAAATTATTACTTGGTTCAATATCCAAAGTAATAACATTACTCATTCTCATGGTCATAGCCATGGAGGAAGGTGGTTACATACCGAGCTTGCAAATGGCTTCAGGGATCAAAGGGAAGAAAATTACTTGGATAAATAAAAATGGAATATTGGGTTTTGTTGAATCCATTATTTTGAGCCAAGAAGAAGCCAAAGAACCCTTTTACATACTTGACCTAGGACTCCTCAGCAATCTTGTCCATAACTGGACTCATAATCTTCCAATGATTCAGCCATATTACGCCGTCAAGTGTAACTCTAACACTGAATTTCTTGGTGCCATGGCTACTCTCGGCTCTAACTTTGACTGCGCCAGTCGAGCCGAGATCGAGTCCGTTATAGCTCTTGGTGTGTCGGCAGATCGAATTATCTTTGCCAACCCATGCAAGGCGGAGTCCCACATCAATTACGCTGCTAGCGTCGGTGTTAACTTGACGACTTTCGACTCTATAACTGAAGTAAGGAAGATCAAAAAATGTCACCCAAAATGCGCATTGCTAATCCGAATCAAAGCCGTAGATGATAGTACATCCCGATGTCCATTGAGCTCCAAGTATGGTGCACTCCCGGACGAGATAGAGTCGCTCCTACAAGCTGCTCAAGCTGCGAAACTCGATGTCATTGGCGTTTCTTTCCATATTGGAAGTGGAAGCAGGGATGCTTGCGCTTATCGCTTCGCCATAGCTACGGTCAAAGCAGTGTTTGATACTGCAGTTCGATTAGGGATGCCGAGAATGAAGCCAGGGCGGTATTTTGCAGAAAAATGCTTTACATTGGCAACGAACATAATCGGAAAGCGAGTGAGGGGAGATTTAAGAGAGTATTGGATAACTGATGGAGTATATGGCTCAATGAATTGCATTATCAACGATCACACGGCGGTTGTCACGTGCTCCCCATTAGCCGCCACGTCAAACCCTCAAAATCTGACGTGTACAAATGCTGAGGTGTACAAATCGACTGTGTTTGGACCCACATGCGATGCTTTAGATACAATTTCCACTGGTTATTGGCTACCGGATATGGAGGTGGATGATTGGTTGTTATTTCCTAACATGGGCGCTTACACGTCAGCAACAGGAACTAACTTCAATGGGTTTACCACCTCCTCAATACCCACCCATCTTGCTTACTCCAATCCTTTTTGA

Coding sequence (CDS)

ATGGTCATAGCCATGGAGGAAGGTGGTTACATACCGAGCTTGCAAATGGCTTCAGGGATCAAAGGGAAGAAAATTACTTGGATAAATAAAAATGGAATATTGGGTTTTGTTGAATCCATTATTTTGAGCCAAGAAGAAGCCAAAGAACCCTTTTACATACTTGACCTAGGACTCCTCAGCAATCTTGTCCATAACTGGACTCATAATCTTCCAATGATTCAGCCATATTACGCCGTCAAGTGTAACTCTAACACTGAATTTCTTGGTGCCATGGCTACTCTCGGCTCTAACTTTGACTGCGCCAGTCGAGCCGAGATCGAGTCCGTTATAGCTCTTGGTGTGTCGGCAGATCGAATTATCTTTGCCAACCCATGCAAGGCGGAGTCCCACATCAATTACGCTGCTAGCGTCGGTGTTAACTTGACGACTTTCGACTCTATAACTGAAGTAAGGAAGATCAAAAAATGTCACCCAAAATGCGCATTGCTAATCCGAATCAAAGCCGTAGATGATAGTACATCCCGATGTCCATTGAGCTCCAAGTATGGTGCACTCCCGGACGAGATAGAGTCGCTCCTACAAGCTGCTCAAGCTGCGAAACTCGATGTCATTGGCGTTTCTTTCCATATTGGAAGTGGAAGCAGGGATGCTTGCGCTTATCGCTTCGCCATAGCTACGGTCAAAGCAGTGTTTGATACTGCAGTTCGATTAGGGATGCCGAGAATGAAGCCAGGGCGGTATTTTGCAGAAAAATGCTTTACATTGGCAACGAACATAATCGGAAAGCGAGTGAGGGGAGATTTAAGAGAGTATTGGATAACTGATGGAGTATATGGCTCAATGAATTGCATTATCAACGATCACACGGCGGTTGTCACGTGCTCCCCATTAGCCGCCACGTCAAACCCTCAAAATCTGACGTGTACAAATGCTGAGGTGTACAAATCGACTGTGTTTGGACCCACATGCGATGCTTTAGATACAATTTCCACTGGTTATTGGCTACCGGATATGGAGGTGGATGATTGGTTGTTATTTCCTAACATGGGCGCTTACACGTCAGCAACAGGAACTAACTTCAATGGGTTTACCACCTCCTCAATACCCACCCATCTTGCTTACTCCAATCCTTTTTGA

Protein sequence

MVIAMEEGGYIPSLQMASGIKGKKITWINKNGILGFVESIILSQEEAKEPFYILDLGLLSNLVHNWTHNLPMIQPYYAVKCNSNTEFLGAMATLGSNFDCASRAEIESVIALGVSADRIIFANPCKAESHINYAASVGVNLTTFDSITEVRKIKKCHPKCALLIRIKAVDDSTSRCPLSSKYGALPDEIESLLQAAQAAKLDVIGVSFHIGSGSRDACAYRFAIATVKAVFDTAVRLGMPRMKPGRYFAEKCFTLATNIIGKRVRGDLREYWITDGVYGSMNCIINDHTAVVTCSPLAATSNPQNLTCTNAEVYKSTVFGPTCDALDTISTGYWLPDMEVDDWLLFPNMGAYTSATGTNFNGFTTSSIPTHLAYSNPF

Homology

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BLAST of Lsi08G012870 vs. Swiss-Prot
Match: DCOR_DATST (Ornithine decarboxylase OS=Datura stramonium PE=2 SV=1)

HSP 1 Score: 423.3 bits (1087), Expect = 2.8e-117
Identity = 218/411 (53.04%), Postives = 275/411 (66.91%), Query Frame = 1


Query: 8   GGYIPSLQMASGIKGKKITWINKNGILGFVESIILSQ-EEAKEPFYILDLGLLSNLVHNW 67
           GG  P+   A     +K+  ++++ +  F+ SII  + ++ K+PFY+LDLG + +L+  W
Sbjct: 22  GGATPA-PAAENDHTRKVVPLSRDALQDFMVSIITQKLQDEKQPFYVLDLGEVVSLMDQW 81

Query: 68  THNLPMIQPYYAVKCNSNTEFLGAMATLGSNFDCASRAEIESVIALGVSADRIIFANPCK 127
              LP I+P+YAVKCN    FL  ++ +GSNFDCASRAEIE V++LG+S DRI+FANPCK
Sbjct: 82  NAGLPNIRPFYAVKCNPEPSFLSMLSAMGSNFDCASRAEIEYVLSLGISPDRIVFANPCK 141

Query: 128 AESHINYAASVGVNLTTFDSITEVRKIKKCHPKCALLIRIKAVDDSTSRCPLSSKYGALP 187
            ES I +AA VGVNLTTFDS  EV KI+K HPKC LL+RIK +DD  +RCP+  KYGALP
Sbjct: 142 PESDIIFAAKVGVNLTTFDSEDEVYKIRKHHPKCELLLRIKPMDDGNARCPMGPKYGALP 201

Query: 188 DEIESLLQAAQAAKLDVIGVSFHIGSGSRDACAYRFAIATVKAVFDTAVRLGMPRMK--- 247
           +E+E LL+ AQAA+L V GVSFHIGSG  D+ AY  AIA  K VF+TA R GM +M    
Sbjct: 202 EEVEPLLRTAQAARLTVSGVSFHIGSGDADSKAYLGAIAAAKGVFETAARFGMSKMTVLD 261

Query: 248 -PGRY------------------------------------FAEKCFTLATNIIGKRVRG 307
             G +                                    FAE  FTLAT IIGKRVRG
Sbjct: 262 IGGGFTSGHQFTTASAAVRSALEQHFHDEQELTIIAEPGRFFAETAFTLATTIIGKRVRG 321

Query: 308 DLREYWITDGVYGSMNCIINDHTAVVTCSPLAATSNPQNLTCTNAEVYKSTVFGPTCDAL 367
           +LREYWI DG+YGSMNC++ DH A V  +PLA  SN  NL C  ++ + STVFGPTCDAL
Sbjct: 322 ELREYWINDGLYGSMNCVLYDH-ATVNATPLACMSNRSNLNCGGSKTFPSTVFGPTCDAL 381

Query: 368 DTISTGYWLPDMEVDDWLLFPNMGAYTSATGTNFNGFTTSSIPTHLAYSNP 378
           DT+   Y LP+++V+DWL+FPNMGAYT A G+NFNGF TS+I THLAY+ P
Sbjct: 382 DTVLRDYQLPELQVNDWLIFPNMGAYTKAAGSNFNGFNTSAIVTHLAYAYP 430

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BLAST of Lsi08G012870 vs. Swiss-Prot
Match: DCOR_CAPAN (Ornithine decarboxylase OS=Capsicum annuum GN=ODC PE=2 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 1.9e-86
Identity = 185/415 (44.58%), Postives = 249/415 (60.00%), Query Frame = 1


Query: 8   GGYIPSLQMASGIKG---KKITWINKNGILGFVESIILSQEEA-KEPFYILDLGLLSNLV 67
           GG  PS   A+   G   +K+  ++K+ +  F+ SII  + +  K+PFY+LDLG + +L+
Sbjct: 22  GGAPPSTAAAAAENGDTTRKVVPLSKDALQDFMVSIITQKLQGEKKPFYVLDLGEVVSLM 81

Query: 68  HNWTHNLPMIQPYYAVKCNSNTEFLGAMATLGSNFDCASRAEIESVIALGVSADRIIFAN 127
             W   LP ++P+YAVKCN    FL  +A +GSNF CASRAEIE V++LG+S +RI+FAN
Sbjct: 82  DQWNVALPNVRPFYAVKCNPEPSFLSMLAAMGSNFVCASRAEIEYVLSLGISPERIVFAN 141

Query: 128 PCKAESHINYAASVGVNLTTFDSITEVRKIKK----------------CHPKCALLIRIK 187
           PCK ES I +A  VGVNLTT+DS  EV KIKK                 + +C +  +  
Sbjct: 142 PCKPESDIIFAEKVGVNLTTYDSEDEVYKIKKHHPKCELLLRIKPMNDGNARCPMGPKYG 201

Query: 188 AVDDS---------TSRCPLSS---KYGALPDEIESLLQAAQAAK-----LDVIGVS--- 247
           A+ +           SR  +S      G+   +  + L A  AAK         G+S   
Sbjct: 202 ALPEEIEPLLRIAQASRLTVSGVSFHIGSGDADSNAYLGAIAAAKQVFETAAKFGMSKMN 261

Query: 248 -FHIGSGSRDACAYRFAIATVKAVFDTAVRLGMPRM----KPGRYFAEKCFTLATNIIGK 307
              IG G      +  A   VK+          P +    +PGR+FAE  FTLAT IIGK
Sbjct: 262 VLDIGGGFTSGHQFTTAATAVKSALQQHFS-NEPELTIIAEPGRFFAETAFTLATTIIGK 321

Query: 308 RVRGDLREYWITDGVYGSMNCIINDHTAVVTCSPLAATSNPQNLTCTNAEVYKSTVFGPT 367
           RVRGDLREYWI DG+YGSMNC++ DH A VT +PLA  SN  NL C+ ++++ ST+FGPT
Sbjct: 322 RVRGDLREYWINDGLYGSMNCVLYDH-ATVTATPLACMSNRVNLNCSGSKMFPSTIFGPT 381

Query: 368 CDALDTISTGYWLPDMEVDDWLLFPNMGAYTSATGTNFNGFTTSSIPTHLAYSNP 378
           CDALDT+   Y +P+++V+DW++FPNMGAYT A G+NFNGF TS+I THLAY+ P
Sbjct: 382 CDALDTVLRDYHVPELQVNDWVIFPNMGAYTKAAGSNFNGFNTSAIVTHLAYAYP 434

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BLAST of Lsi08G012870 vs. Swiss-Prot
Match: DCOR_TRYBB (Ornithine decarboxylase OS=Trypanosoma brucei brucei PE=1 SV=2)

HSP 1 Score: 271.6 bits (693), Expect = 1.3e-71
Identity = 149/377 (39.52%), Postives = 206/377 (54.64%), Query Frame = 1


Query: 49  EPFYILDLGLLSNLVHNWTHNLPMIQPYYAVKCNSNTEFLGAMATLGSNFDCASRAEIES 108
           +PF++ DLG +      W   LP + P+YAVKCN +   LG +A LG+ FDCAS  EI+ 
Sbjct: 36  DPFFVADLGDIVRKHETWKKCLPRVTPFYAVKCNDDWRVLGTLAALGTGFDCASNTEIQR 95

Query: 109 VIALGVSADRIIFANPCKAESHINYAASVGVNLTTFDSITEVRKIKKCHPKCALLIRIKA 168
           V  +GV  ++II+ANPCK  SHI YA   GV++ TFD + E+ K+ K HPK  +++RI +
Sbjct: 96  VRGIGVPPEKIIYANPCKQISHIRYARDSGVDVMTFDCVDELEKVAKTHPKAKMVLRI-S 155

Query: 169 VDDSTSRCPLSSKYGALPDEIESLLQAAQAAKLDVIGVSFHIGSGSRDACAYRFAIATVK 228
            DDS +RC LS K+GA  ++   +L+ A+   +DV GVSFH+GSGS DA  +  AI+  +
Sbjct: 156 TDDSLARCRLSVKFGAKVEDCRFILEQAKKLNIDVTGVSFHVGSGSTDASTFAQAISDSR 215

Query: 229 AVFDTAVRLGM-------------------------------------PRMK------PG 288
            VFD    LG                                      P +K      PG
Sbjct: 216 FVFDMGTELGFNMHILDIGGGFPGTRDAPLKFEEIAGVINNALEKHFPPDLKLTIVAEPG 275

Query: 289 RYFAEKCFTLATNIIGKRVRGDLRE--------------YWITDGVYGSMNCIINDHTAV 348
           RY+    FTLA N+I K+V   ++               Y++ DGVYGS NCI+ DH  V
Sbjct: 276 RYYVASAFTLAVNVIAKKVTPGVQTDVGAHAESNAQSFMYYVNDGVYGSFNCILYDHAVV 335

Query: 349 VTCSPLAATSNPQNLTCTNAEVYKSTVFGPTCDALDTISTGYWLPDMEVDDWLLFPNMGA 369
               PL     PQ     N ++Y S+V+GPTCD LD I   Y+LP+M+V +WLLF +MGA
Sbjct: 336 ---RPL-----PQREPIPNEKLYPSSVWGPTCDGLDQIVERYYLPEMQVGEWLLFEDMGA 395

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BLAST of Lsi08G012870 vs. Swiss-Prot
Match: DCOR_SOLLC (Ornithine decarboxylase OS=Solanum lycopersicum GN=ODC PE=2 SV=2)

HSP 1 Score: 257.7 bits (657), Expect = 2.0e-67
Identity = 128/235 (54.47%), Postives = 167/235 (71.06%), Query Frame = 1


Query: 9   GYIPSLQMASGIKGKKITWINKNGILGFVESIILSQ-EEAKEPFYILDLGLLSNLVHNWT 68
           G  P    A     +K+  ++K+ +  F+ SII  + ++ K+PFY+LDLG + +L+  W 
Sbjct: 22  GGAPVAAAAENGHTRKVVPLSKDALQDFMVSIITQKLQDDKQPFYVLDLGEVVSLMEQWN 81

Query: 69  HNLPMIQPYYAVKCNSNTEFLGAMATLGSNFDCASRAEIESVIALGVSADRIIFANPCKA 128
             LP I+P+YAVKCN    FL  ++ +GSNFDCASRAEIE V++ G+S DRI+FANPCK 
Sbjct: 82  SALPNIRPFYAVKCNPEPSFLSMLSAMGSNFDCASRAEIEYVLSHGISPDRIVFANPCKP 141

Query: 129 ESHINYAASVGVNLTTFDSITEVRKIKKCHPKCALLIRIKAVDDSTSRCPLSSKYGALPD 188
           ES I +A  +GVNLTT+DS  EV KI+K HPKC LL+RIK + D  +RCP+  KYGALP+
Sbjct: 142 ESDIIFAEKIGVNLTTYDSEDEVYKIRKHHPKCELLLRIKPMTDGNARCPMGPKYGALPE 201

Query: 189 EIESLLQAAQAAKLDVIGVSFHIGSGSRDACAYRFAIATVKAVFDTAVRLGMPRM 243
           EIE LL+ AQAA+L V GVSFHIGSG  D+ AY  AIA  K VF+TA +LGMP+M
Sbjct: 202 EIEPLLRTAQAARLTVSGVSFHIGSGDADSNAYLGAIAAAKQVFETAAQLGMPKM 256

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BLAST of Lsi08G012870 vs. Swiss-Prot
Match: DCOR_SCHPO (Ornithine decarboxylase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spe1 PE=2 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 1.8e-63
Identity = 147/387 (37.98%), Postives = 205/387 (52.97%), Query Frame = 1


Query: 30  KNGILGFVESIILSQEEAKEPFYILDLGLLSNLVHNWTHNLPMIQPYYAVKCNSNTEFLG 89
           KN I     + +  +    + F++ DL  +   +  W   LP +QP+YAVKCN + + L 
Sbjct: 48  KNTIEEIERAAVRGEPADSDAFFVADLNGVYRQLLRWHAKLPRVQPFYAVKCNPDPKVLA 107

Query: 90  AMATLGSNFDCASRAEIESVIALGVSADRIIFANPCKAESHINYAASVGVNLTTFDSITE 149
            +   G+ FDCAS+ E+E ++ LGVS DRI++ANPCKA +++ YAAS G+NL TFD+  E
Sbjct: 108 LLNKFGTGFDCASKGELEQILGLGVSPDRIVYANPCKAITYVRYAASKGINLMTFDNADE 167

Query: 150 VRKIKKCHPKCALLIRIKAVDDSTSRCPLSSKYGALPDEIESLLQAAQAAKLDVIGVSFH 209
           + K+K+ HP   LL+RI + DDS S C LS K+GA  D+   LL  A++ +L+V+GVSFH
Sbjct: 168 LYKVKQHHPNSRLLLRI-STDDSNSLCRLSLKFGASLDDTGKLLDIAKSLELNVVGVSFH 227

Query: 210 IGSGSRDACAYRFAIATVKAVFDTAVRLG--MPRMKPGRYFAEKCF-------------- 269
           +GSGS D  A+  AI   + VFD  +  G     +  G  F    F              
Sbjct: 228 VGSGSYDPSAFLDAIQRSRQVFDQGLERGFNFDLLDIGGGFMNDSFDGVADLIRSALDTY 287

Query: 270 --------------------TLATNIIGKRVRGDLRE--YWITDGVYGSMNCIINDHTAV 329
                               TLA N+I KR   D  +  Y++ DGVYGS+NCI+ DH   
Sbjct: 288 FDPSIRVISEPGRFFVSSSFTLAVNVIAKRKLDDEEKVMYYVNDGVYGSLNCILFDHQ-- 347

Query: 330 VTCSPLAATSNPQNLTCTNAEVYKSTV---------FGPTCDALDTISTGYWLP-DMEVD 369
               P+A       L C +  VY   V         +GPTCD+LD I+    LP ++ V 
Sbjct: 348 ---HPVARV-----LKCGSRFVYNDLVGTGQHRCFIWGPTCDSLDVIANDAHLPYELNVG 407

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BLAST of Lsi08G012870 vs. TrEMBL
Match: B9H5C8_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s26760g PE=3 SV=2)

HSP 1 Score: 470.3 bits (1209), Expect = 2.2e-129
Identity = 237/400 (59.25%), Postives = 290/400 (72.50%), Query Frame = 1


Query: 17  ASGIKGKKITWINKNGILGFVESIILSQEEAKEPFYILDLGLLSNLVHNWTHNLPMIQPY 76
           A G+KGK++T I+KNG+  F+ SII  ++E KEPFY+LDLG ++ L+  W   LPM+ P+
Sbjct: 16  APGVKGKRVTTISKNGLTEFMLSIISKKQETKEPFYVLDLGEVTALMDKWLMTLPMVHPF 75

Query: 77  YAVKCNSNTEFLGAMATLGSNFDCASRAEIESVIALGVSADRIIFANPCKAESHINYAAS 136
           YAVKCN +   LG++A LGSNFDCASRAEIESV++LGVS +RI++ANPCK ESHI YAAS
Sbjct: 76  YAVKCNPDPALLGSLAALGSNFDCASRAEIESVLSLGVSPNRIVYANPCKQESHIKYAAS 135

Query: 137 VGVNLTTFDSITEVRKIKKCHPKCALLIRIKAVDDSTSRCPLSSKYGALPDEIESLLQAA 196
           VGVNLTTFDS  E+ KI+K H KCALLIRIKA DDS +RCPL  KYGALP+E+  LLQAA
Sbjct: 136 VGVNLTTFDSKEELDKIRKWHSKCALLIRIKAPDDSGARCPLGPKYGALPEEVTPLLQAA 195

Query: 197 QAAKLDVIGVSFHIGSGSRDACAYRFAIATVKAVFDTAVRLGMPRMK---------PGRY 256
           Q A+L+V+GVSFHIGSG+  + AY  AIA+ K+VF+ AVRLGMP MK          G  
Sbjct: 196 QTAQLNVVGVSFHIGSGATRSRAYEGAIASAKSVFEAAVRLGMPGMKILNIGGGFTAGSQ 255

Query: 257 FAEK-------------------------------CFTLATNIIGKRVRGDLREYWITDG 316
           F E                                 FTLATNIIGKRVRGDLREYWI DG
Sbjct: 256 FDEAATTIKSALQAYFPNEPGLTVISEPGRFFAESAFTLATNIIGKRVRGDLREYWINDG 315

Query: 317 VYGSMNCIINDHTAVVTCSPLAATSNPQNLTCTNAEVYKSTVFGPTCDALDTISTGYWLP 376
           +YGSMNCI+ DH A +TC+PLA  SN  NLTC     Y STVFGPTCDALDT+ TG+ LP
Sbjct: 316 IYGSMNCILYDH-ATITCTPLACNSNHANLTCKGLRAYSSTVFGPTCDALDTVLTGHQLP 375

[Close]

BLAST of Lsi08G012870 vs. TrEMBL
Match: A0A061FL05_THECC (Pyridoxal-dependent decarboxylase family protein, putative OS=Theobroma cacao GN=TCM_034310 PE=3 SV=1)

HSP 1 Score: 457.2 bits (1175), Expect = 1.9e-125
Identity = 235/402 (58.46%), Postives = 282/402 (70.15%), Query Frame = 1


Query: 17  ASGIKGKKITWINKNGILGFVESIILSQEEAKEPFYILDLGLLSNLVHNWTHNLPMIQPY 76
           A G++GKK+  ++K+G+  F++SI+ +++E KEPFY+LDLG++  L   W  NLPM QP+
Sbjct: 14  APGVRGKKVAALSKDGLTAFIQSIVSTKQEMKEPFYVLDLGVVMALFDKWARNLPMAQPF 73

Query: 77  YAVKCNSNTEFLGAMATLGSNFDCASRAEIESVIALGVSADRIIFANPCKAESHINYAAS 136
           YAVKCN N   LGA+ATLGS FDCAS+AEIESV++LGVS  RIIFANPCKAESHI YAA+
Sbjct: 74  YAVKCNPNPALLGALATLGSGFDCASKAEIESVLSLGVSPGRIIFANPCKAESHIKYAAT 133

Query: 137 VGVNLTTFDSITEVRKIKKCHPKCALLIRIKAVDDSTSRCPLSSKYGALPDEIESLLQAA 196
           VGVNLTTFDS  E+ KIKK HPKCALLIR+KA DD  +RCPL  KYGALP+E+  LLQAA
Sbjct: 134 VGVNLTTFDSKEELEKIKKWHPKCALLIRVKAPDDGGARCPLGPKYGALPEEVTPLLQAA 193

Query: 197 QAAKLDVIGVSFH-------------------------------------IGSGSRDACA 256
           Q A+L V GVSFH                                     IG G      
Sbjct: 194 QTARLTVTGVSFHIGSGAMQFRAYREAIAAAKTVFETAARLGMPKMHVLNIGGGFTAGPQ 253

Query: 257 YRFAIATVKAVFDTAVRLGMPRM----KPGRYFAEKCFTLATNIIGKRVRGDLREYWITD 316
           +  A +TVKA    A     P +    +PGR+FAE  FTLATNIIGKRVRGDLREYWI D
Sbjct: 254 FAEAASTVKAALQ-AYFPNEPSLTVIAEPGRFFAESAFTLATNIIGKRVRGDLREYWIND 313

Query: 317 GVYGSMNCIINDHTAVVTCSPLAATSNPQNLTCTNAEVYKSTVFGPTCDALDTISTGYWL 376
           G+YGSMNCI+ DH AVVTC PLA  S+P+   C  A  Y STVFGPTCDALDT+  GY L
Sbjct: 314 GIYGSMNCILYDH-AVVTCMPLARASSPR---CKGARTYDSTVFGPTCDALDTVLKGYPL 373

Query: 377 PDMEVDDWLLFPNMGAYTSATGTNFNGFTTSSIPTHLAYSNP 378
           P+++V+DWL+FPNMGAYT+A G+NFNGF TS+I T+LAYSNP
Sbjct: 374 PELQVNDWLVFPNMGAYTAAAGSNFNGFNTSAILTYLAYSNP 410

[Close]

BLAST of Lsi08G012870 vs. TrEMBL
Match: A2TBH8_THECC (Putative ornithine decarboxylase OS=Theobroma cacao PE=2 SV=1)

HSP 1 Score: 453.8 bits (1166), Expect = 2.1e-124
Identity = 234/402 (58.21%), Postives = 281/402 (69.90%), Query Frame = 1


Query: 17  ASGIKGKKITWINKNGILGFVESIILSQEEAKEPFYILDLGLLSNLVHNWTHNLPMIQPY 76
           A G++GKK+  ++K+G+  F++SI+ +++E KEPFY+LDLG++  L   W  NLPM QP+
Sbjct: 14  APGVRGKKVAALSKDGLTAFIQSIVSTKQEMKEPFYVLDLGVVMALFDKWARNLPMAQPF 73

Query: 77  YAVKCNSNTEFLGAMATLGSNFDCASRAEIESVIALGVSADRIIFANPCKAESHINYAAS 136
           YAVKCN N   LGA+ATLGS FDCAS+AEIESV++LGVS  RIIFANPCKAESHI YAA+
Sbjct: 74  YAVKCNPNPALLGALATLGSGFDCASKAEIESVLSLGVSPGRIIFANPCKAESHIKYAAT 133

Query: 137 VGVNLTTFDSITEVRKIKKCHPKCALLIRIKAVDDSTSRCPLSSKYGALPDEIESLLQAA 196
           VGVNLTTFDS  E+ KIKK HPKCALLIR+KA DD  +RCPL  KYGALP+E+  LLQAA
Sbjct: 134 VGVNLTTFDSKEELEKIKKWHPKCALLIRVKAPDDGGARCPLGPKYGALPEEVTPLLQAA 193

Query: 197 QAAKLDVIGVSFH-------------------------------------IGSGSRDACA 256
           Q A+L V GVSFH                                     IG G      
Sbjct: 194 QTARLTVTGVSFHIGSGAMQFRAYREAIAAAKTVFETAARLGMPKMHVLNIGGGFTAGPQ 253

Query: 257 YRFAIATVKAVFDTAVRLGMPRM----KPGRYFAEKCFTLATNIIGKRVRGDLREYWITD 316
           +  A +TVKA    A     P +    +PGR+FAE  FTLATNIIGKRVRGDLREYWI D
Sbjct: 254 FAEAASTVKAALQ-AYFPNEPSLTVIAEPGRFFAESAFTLATNIIGKRVRGDLREYWIND 313

Query: 317 GVYGSMNCIINDHTAVVTCSPLAATSNPQNLTCTNAEVYKSTVFGPTCDALDTISTGYWL 376
           G+YGSMNCI+ DH AVVTC PLA  S+P+   C  A  Y STVFGPTCDALDT+   Y L
Sbjct: 314 GIYGSMNCILYDH-AVVTCMPLARASSPR---CKGARTYDSTVFGPTCDALDTVLKVYPL 373

Query: 377 PDMEVDDWLLFPNMGAYTSATGTNFNGFTTSSIPTHLAYSNP 378
           P+++V+DWL+FPNMGAYT+A G+NFNGF TS+I T+LAYSNP
Sbjct: 374 PELQVNDWLVFPNMGAYTAAAGSNFNGFNTSAILTYLAYSNP 410

[Close]

BLAST of Lsi08G012870 vs. TrEMBL
Match: W9RN11_9ROSA (Ornithine decarboxylase OS=Morus notabilis GN=L484_011648 PE=3 SV=1)

HSP 1 Score: 448.4 bits (1152), Expect = 8.9e-123
Identity = 224/368 (60.87%), Postives = 270/368 (73.37%), Query Frame = 1


Query: 24  KITWINKNGILGFVESIILSQEEAKEPFYILDLGLLSNLVHNWTHNLPMIQPYYAVKCNS 83
           K+T + K+G+ GF++S+IL+    KEPFY+LDLG++ NL+ NWT  LPMI+P+YAVKCNS
Sbjct: 31  KVTHLLKDGLTGFMQSLILNHHHTKEPFYVLDLGVVDNLMDNWTRFLPMIRPFYAVKCNS 90

Query: 84  NTEFLGAMATLGSNFDCASRAEIESVIALGVSADRIIFANPCKAESHINYAASVGVNLTT 143
           +   L AMATL   FDCAS+AEIES++ALGVS   IIFANPCK +SHI YAASV VNLTT
Sbjct: 91  DPALLAAMATLDMGFDCASQAEIESILALGVSPGLIIFANPCKLDSHIRYAASVRVNLTT 150

Query: 144 FDSITEVRKIKKCHPKCALLIRIKAVDDSTSRCPLSSKYGALPDEIESLLQAAQAAKLDV 203
           FDS TEV KI++ HPKC+LLIRIK  DD  S  PL SK+GALP+E+E LLQAA+AA+L V
Sbjct: 151 FDSGTEVEKIREFHPKCSLLIRIKPPDDGGSMWPLDSKFGALPEEVEPLLQAAKAAQLPV 210

Query: 204 IGVSFHIGSGSRDACAYRFAIATVKAVFDTAVRLGMPRMK--------------PGRYFA 263
           IGVSFHIGS +  + AY  AI   K VF+ A +LGMP M+              PGR+F 
Sbjct: 211 IGVSFHIGSRAACSRAYAVAIEAAKKVFEAAAQLGMPPMRTYFPDTTGMSIIAEPGRFFV 270

Query: 264 EKCFTLATNIIGKRVRGDLREYWITDGVYGSMNCIINDHTAVVTCSPLAATSNPQNLTCT 323
           E  FTLA NIIGKRVRG+LREYWI DGVYGS+ C        +TC PL   SN +N TC 
Sbjct: 271 ESAFTLAANIIGKRVRGELREYWINDGVYGSLMCSALFEPKNLTCRPLGCNSNRENPTCE 330

Query: 324 NAEVYKSTVFGPTCDALDTISTGYWLPDMEVDDWLLFPNMGAYTSATGTNFNGFTTSSIP 378
            A  Y STVFGPT DALDT+  G+ LPD+EV+DWL+FPNMGAY+SA  +NFNGF TS+  
Sbjct: 331 GALTYSSTVFGPTLDALDTVMKGHGLPDLEVNDWLVFPNMGAYSSALRSNFNGFNTSAFS 390

[Close]

BLAST of Lsi08G012870 vs. TrEMBL
Match: A0A0V0I7B4_SOLCH (Putative ornithine decarboxylase-like OS=Solanum chacoense PE=3 SV=1)

HSP 1 Score: 424.9 bits (1091), Expect = 1.1e-115
Identity = 216/410 (52.68%), Postives = 276/410 (67.32%), Query Frame = 1


Query: 9   GYIPSLQMASGIKGKKITWINKNGILGFVESIILSQ-EEAKEPFYILDLGLLSNLVHNWT 68
           G +P    A     +K+  ++K+ +  F+ SII  + ++ K+PFY+LDLG + +L+  W 
Sbjct: 22  GGVPVAAAAENGHTRKVVPLSKDALQDFMVSIITQKLQDDKQPFYVLDLGEVVSLMEQWN 81

Query: 69  HNLPMIQPYYAVKCNSNTEFLGAMATLGSNFDCASRAEIESVIALGVSADRIIFANPCKA 128
             LP I+P+YAVKCN    FL  ++ +GSNFDCASRAEIE V++LG+S DRI+FANPCK 
Sbjct: 82  SALPNIRPFYAVKCNPEPSFLSMLSAMGSNFDCASRAEIEYVLSLGISPDRIVFANPCKP 141

Query: 129 ESHINYAASVGVNLTTFDSITEVRKIKKCHPKCALLIRIKAVDDSTSRCPLSSKYGALPD 188
           ES I +A  +GVNLTT+DS  EV KI+K HPKC LL+RIK ++D  +RCP+  KYGALP+
Sbjct: 142 ESDIIFAEKIGVNLTTYDSEDEVYKIRKHHPKCELLLRIKPMNDGNARCPMGPKYGALPE 201

Query: 189 EIESLLQAAQAAKLDVIGVSFHIGSGSRDACAYRFAIATVKAVFDTAVRLGMPRM----- 248
           EIE LL+ AQAA+L V GVSFHIGSG  D+ AY  AIA  K VF+TA +LGMP+M     
Sbjct: 202 EIEPLLRTAQAARLTVSGVSFHIGSGDADSNAYLGAIAAAKQVFETATQLGMPKMTVLDI 261

Query: 249 ----KPGR-------------------------------YFAEKCFTLATNIIGKRVRGD 308
                 G                                +FAE  FTLAT IIGKRVRG+
Sbjct: 262 GGGFTSGHQFTSAAPAVKSALETHFQNSPELTIIAEPGRFFAETAFTLATTIIGKRVRGE 321

Query: 309 LREYWITDGVYGSMNCIINDHTAVVTCSPLAATSNPQNLTCTNAEVYKSTVFGPTCDALD 368
           L+EYWI DG+YGSMNC++ DH A VT +PLA  SN  NL C  ++ + STVFGPTCDALD
Sbjct: 322 LKEYWINDGLYGSMNCVLYDH-ATVTATPLACMSNRNNLNCGGSKTFPSTVFGPTCDALD 381

Query: 369 TISTGYWLPDMEVDDWLLFPNMGAYTSATGTNFNGFTTSSIPTHLAYSNP 378
           T+   Y LP+++V+DWL+FPNMGAYT A G+NFNGF TS+I THLAY+ P
Sbjct: 382 TVLRDYQLPELQVNDWLVFPNMGAYTKAAGSNFNGFNTSAIVTHLAYAYP 430

[Close]

BLAST of Lsi08G012870 vs. NCBI nr
Match: gi|566173405|ref|XP_002307756.2| (hypothetical protein POPTR_0005s26760g [Populus trichocarpa])

HSP 1 Score: 470.3 bits (1209), Expect = 3.1e-129
Identity = 237/400 (59.25%), Postives = 290/400 (72.50%), Query Frame = 1


Query: 17  ASGIKGKKITWINKNGILGFVESIILSQEEAKEPFYILDLGLLSNLVHNWTHNLPMIQPY 76
           A G+KGK++T I+KNG+  F+ SII  ++E KEPFY+LDLG ++ L+  W   LPM+ P+
Sbjct: 16  APGVKGKRVTTISKNGLTEFMLSIISKKQETKEPFYVLDLGEVTALMDKWLMTLPMVHPF 75

Query: 77  YAVKCNSNTEFLGAMATLGSNFDCASRAEIESVIALGVSADRIIFANPCKAESHINYAAS 136
           YAVKCN +   LG++A LGSNFDCASRAEIESV++LGVS +RI++ANPCK ESHI YAAS
Sbjct: 76  YAVKCNPDPALLGSLAALGSNFDCASRAEIESVLSLGVSPNRIVYANPCKQESHIKYAAS 135

Query: 137 VGVNLTTFDSITEVRKIKKCHPKCALLIRIKAVDDSTSRCPLSSKYGALPDEIESLLQAA 196
           VGVNLTTFDS  E+ KI+K H KCALLIRIKA DDS +RCPL  KYGALP+E+  LLQAA
Sbjct: 136 VGVNLTTFDSKEELDKIRKWHSKCALLIRIKAPDDSGARCPLGPKYGALPEEVTPLLQAA 195

Query: 197 QAAKLDVIGVSFHIGSGSRDACAYRFAIATVKAVFDTAVRLGMPRMK---------PGRY 256
           Q A+L+V+GVSFHIGSG+  + AY  AIA+ K+VF+ AVRLGMP MK          G  
Sbjct: 196 QTAQLNVVGVSFHIGSGATRSRAYEGAIASAKSVFEAAVRLGMPGMKILNIGGGFTAGSQ 255

Query: 257 FAEK-------------------------------CFTLATNIIGKRVRGDLREYWITDG 316
           F E                                 FTLATNIIGKRVRGDLREYWI DG
Sbjct: 256 FDEAATTIKSALQAYFPNEPGLTVISEPGRFFAESAFTLATNIIGKRVRGDLREYWINDG 315

Query: 317 VYGSMNCIINDHTAVVTCSPLAATSNPQNLTCTNAEVYKSTVFGPTCDALDTISTGYWLP 376
           +YGSMNCI+ DH A +TC+PLA  SN  NLTC     Y STVFGPTCDALDT+ TG+ LP
Sbjct: 316 IYGSMNCILYDH-ATITCTPLACNSNHANLTCKGLRAYSSTVFGPTCDALDTVLTGHQLP 375

[Close]

BLAST of Lsi08G012870 vs. NCBI nr
Match: gi|590594695|ref|XP_007017924.1| (Pyridoxal-dependent decarboxylase family protein, putative [Theobroma cacao])

HSP 1 Score: 457.2 bits (1175), Expect = 2.8e-125
Identity = 235/402 (58.46%), Postives = 282/402 (70.15%), Query Frame = 1


Query: 17  ASGIKGKKITWINKNGILGFVESIILSQEEAKEPFYILDLGLLSNLVHNWTHNLPMIQPY 76
           A G++GKK+  ++K+G+  F++SI+ +++E KEPFY+LDLG++  L   W  NLPM QP+
Sbjct: 14  APGVRGKKVAALSKDGLTAFIQSIVSTKQEMKEPFYVLDLGVVMALFDKWARNLPMAQPF 73

Query: 77  YAVKCNSNTEFLGAMATLGSNFDCASRAEIESVIALGVSADRIIFANPCKAESHINYAAS 136
           YAVKCN N   LGA+ATLGS FDCAS+AEIESV++LGVS  RIIFANPCKAESHI YAA+
Sbjct: 74  YAVKCNPNPALLGALATLGSGFDCASKAEIESVLSLGVSPGRIIFANPCKAESHIKYAAT 133

Query: 137 VGVNLTTFDSITEVRKIKKCHPKCALLIRIKAVDDSTSRCPLSSKYGALPDEIESLLQAA 196
           VGVNLTTFDS  E+ KIKK HPKCALLIR+KA DD  +RCPL  KYGALP+E+  LLQAA
Sbjct: 134 VGVNLTTFDSKEELEKIKKWHPKCALLIRVKAPDDGGARCPLGPKYGALPEEVTPLLQAA 193

Query: 197 QAAKLDVIGVSFH-------------------------------------IGSGSRDACA 256
           Q A+L V GVSFH                                     IG G      
Sbjct: 194 QTARLTVTGVSFHIGSGAMQFRAYREAIAAAKTVFETAARLGMPKMHVLNIGGGFTAGPQ 253

Query: 257 YRFAIATVKAVFDTAVRLGMPRM----KPGRYFAEKCFTLATNIIGKRVRGDLREYWITD 316
           +  A +TVKA    A     P +    +PGR+FAE  FTLATNIIGKRVRGDLREYWI D
Sbjct: 254 FAEAASTVKAALQ-AYFPNEPSLTVIAEPGRFFAESAFTLATNIIGKRVRGDLREYWIND 313

Query: 317 GVYGSMNCIINDHTAVVTCSPLAATSNPQNLTCTNAEVYKSTVFGPTCDALDTISTGYWL 376
           G+YGSMNCI+ DH AVVTC PLA  S+P+   C  A  Y STVFGPTCDALDT+  GY L
Sbjct: 314 GIYGSMNCILYDH-AVVTCMPLARASSPR---CKGARTYDSTVFGPTCDALDTVLKGYPL 373

Query: 377 PDMEVDDWLLFPNMGAYTSATGTNFNGFTTSSIPTHLAYSNP 378
           P+++V+DWL+FPNMGAYT+A G+NFNGF TS+I T+LAYSNP
Sbjct: 374 PELQVNDWLVFPNMGAYTAAAGSNFNGFNTSAILTYLAYSNP 410

[Close]

BLAST of Lsi08G012870 vs. NCBI nr
Match: gi|124298701|gb|ABN04356.1| (putative ornithine decarboxylase [Theobroma cacao])

HSP 1 Score: 453.8 bits (1166), Expect = 3.0e-124
Identity = 234/402 (58.21%), Postives = 281/402 (69.90%), Query Frame = 1


Query: 17  ASGIKGKKITWINKNGILGFVESIILSQEEAKEPFYILDLGLLSNLVHNWTHNLPMIQPY 76
           A G++GKK+  ++K+G+  F++SI+ +++E KEPFY+LDLG++  L   W  NLPM QP+
Sbjct: 14  APGVRGKKVAALSKDGLTAFIQSIVSTKQEMKEPFYVLDLGVVMALFDKWARNLPMAQPF 73

Query: 77  YAVKCNSNTEFLGAMATLGSNFDCASRAEIESVIALGVSADRIIFANPCKAESHINYAAS 136
           YAVKCN N   LGA+ATLGS FDCAS+AEIESV++LGVS  RIIFANPCKAESHI YAA+
Sbjct: 74  YAVKCNPNPALLGALATLGSGFDCASKAEIESVLSLGVSPGRIIFANPCKAESHIKYAAT 133

Query: 137 VGVNLTTFDSITEVRKIKKCHPKCALLIRIKAVDDSTSRCPLSSKYGALPDEIESLLQAA 196
           VGVNLTTFDS  E+ KIKK HPKCALLIR+KA DD  +RCPL  KYGALP+E+  LLQAA
Sbjct: 134 VGVNLTTFDSKEELEKIKKWHPKCALLIRVKAPDDGGARCPLGPKYGALPEEVTPLLQAA 193

Query: 197 QAAKLDVIGVSFH-------------------------------------IGSGSRDACA 256
           Q A+L V GVSFH                                     IG G      
Sbjct: 194 QTARLTVTGVSFHIGSGAMQFRAYREAIAAAKTVFETAARLGMPKMHVLNIGGGFTAGPQ 253

Query: 257 YRFAIATVKAVFDTAVRLGMPRM----KPGRYFAEKCFTLATNIIGKRVRGDLREYWITD 316
           +  A +TVKA    A     P +    +PGR+FAE  FTLATNIIGKRVRGDLREYWI D
Sbjct: 254 FAEAASTVKAALQ-AYFPNEPSLTVIAEPGRFFAESAFTLATNIIGKRVRGDLREYWIND 313

Query: 317 GVYGSMNCIINDHTAVVTCSPLAATSNPQNLTCTNAEVYKSTVFGPTCDALDTISTGYWL 376
           G+YGSMNCI+ DH AVVTC PLA  S+P+   C  A  Y STVFGPTCDALDT+   Y L
Sbjct: 314 GIYGSMNCILYDH-AVVTCMPLARASSPR---CKGARTYDSTVFGPTCDALDTVLKVYPL 373

Query: 377 PDMEVDDWLLFPNMGAYTSATGTNFNGFTTSSIPTHLAYSNP 378
           P+++V+DWL+FPNMGAYT+A G+NFNGF TS+I T+LAYSNP
Sbjct: 374 PELQVNDWLVFPNMGAYTAAAGSNFNGFNTSAILTYLAYSNP 410

[Close]

BLAST of Lsi08G012870 vs. NCBI nr
Match: gi|703117012|ref|XP_010101283.1| (Ornithine decarboxylase [Morus notabilis])

HSP 1 Score: 448.4 bits (1152), Expect = 1.3e-122
Identity = 224/368 (60.87%), Postives = 270/368 (73.37%), Query Frame = 1


Query: 24  KITWINKNGILGFVESIILSQEEAKEPFYILDLGLLSNLVHNWTHNLPMIQPYYAVKCNS 83
           K+T + K+G+ GF++S+IL+    KEPFY+LDLG++ NL+ NWT  LPMI+P+YAVKCNS
Sbjct: 31  KVTHLLKDGLTGFMQSLILNHHHTKEPFYVLDLGVVDNLMDNWTRFLPMIRPFYAVKCNS 90

Query: 84  NTEFLGAMATLGSNFDCASRAEIESVIALGVSADRIIFANPCKAESHINYAASVGVNLTT 143
           +   L AMATL   FDCAS+AEIES++ALGVS   IIFANPCK +SHI YAASV VNLTT
Sbjct: 91  DPALLAAMATLDMGFDCASQAEIESILALGVSPGLIIFANPCKLDSHIRYAASVRVNLTT 150

Query: 144 FDSITEVRKIKKCHPKCALLIRIKAVDDSTSRCPLSSKYGALPDEIESLLQAAQAAKLDV 203
           FDS TEV KI++ HPKC+LLIRIK  DD  S  PL SK+GALP+E+E LLQAA+AA+L V
Sbjct: 151 FDSGTEVEKIREFHPKCSLLIRIKPPDDGGSMWPLDSKFGALPEEVEPLLQAAKAAQLPV 210

Query: 204 IGVSFHIGSGSRDACAYRFAIATVKAVFDTAVRLGMPRMK--------------PGRYFA 263
           IGVSFHIGS +  + AY  AI   K VF+ A +LGMP M+              PGR+F 
Sbjct: 211 IGVSFHIGSRAACSRAYAVAIEAAKKVFEAAAQLGMPPMRTYFPDTTGMSIIAEPGRFFV 270

Query: 264 EKCFTLATNIIGKRVRGDLREYWITDGVYGSMNCIINDHTAVVTCSPLAATSNPQNLTCT 323
           E  FTLA NIIGKRVRG+LREYWI DGVYGS+ C        +TC PL   SN +N TC 
Sbjct: 271 ESAFTLAANIIGKRVRGELREYWINDGVYGSLMCSALFEPKNLTCRPLGCNSNRENPTCE 330

Query: 324 NAEVYKSTVFGPTCDALDTISTGYWLPDMEVDDWLLFPNMGAYTSATGTNFNGFTTSSIP 378
            A  Y STVFGPT DALDT+  G+ LPD+EV+DWL+FPNMGAY+SA  +NFNGF TS+  
Sbjct: 331 GALTYSSTVFGPTLDALDTVMKGHGLPDLEVNDWLVFPNMGAYSSALRSNFNGFNTSAFS 390

[Close]

BLAST of Lsi08G012870 vs. NCBI nr
Match: gi|720032279|ref|XP_010266064.1| (PREDICTED: ornithine decarboxylase-like [Nelumbo nucifera])

HSP 1 Score: 445.3 bits (1144), Expect = 1.1e-121
Identity = 223/403 (55.33%), Postives = 288/403 (71.46%), Query Frame = 1


Query: 17  ASGIKGKKITWINKNGILGFVESIILSQEEAKEPFYILDLGLLSNLVHNWTHNLPMIQPY 76
           A G+K KK+T ++ +G+  F++S+I  ++E K+PFY+LD G++ +L+  W  +LP ++P+
Sbjct: 22  APGVKVKKVTSLSADGLTDFIQSMISKKQEMKDPFYVLDFGVVVSLMDKWKRSLPNVRPF 81

Query: 77  YAVKCNSNTEFLGAMATLGSNFDCASRAEIESVIALGVSADRIIFANPCKAESHINYAAS 136
           YAVKCN +  FL A+A LG +FDCASRAEIE+V+ALGVSADRII+ANPCKAE+ I YAAS
Sbjct: 82  YAVKCNPHPAFLAALAALGVSFDCASRAEIEAVLALGVSADRIIYANPCKAEAQIKYAAS 141

Query: 137 VGVNLTTFDSITEVRKIKKCHPKCALLIRIKAVDDSTSRCPLSSKYGALPDEIESLLQAA 196
           VGVNLTTFDS  E+ K+++ HPKC+LL+R+KA DD  +RCPL  KYGALP+E+  LLQAA
Sbjct: 142 VGVNLTTFDSREEIDKLRRWHPKCSLLLRLKAPDDGGARCPLGPKYGALPEEVTPLLQAA 201

Query: 197 QAAKLDVIGVSFHIGSGSRDACAY--------------------RFAIATV--------- 256
             A+L V GVSFH+GSG+  + AY                    R +I  V         
Sbjct: 202 HVARLTVAGVSFHVGSGATHSRAYSGAIAAAKAVFDTAVGLGMPRMSILNVGGGFTAGVG 261

Query: 257 ------KAVFDTAVRL------GMPRM-KPGRYFAEKCFTLATNIIGKRVRGDLREYWIT 316
                  A  + A+++      G+  + +PGR+FAE  FTLATNIIGKRVRG LREYWI 
Sbjct: 262 PQFEDAAATINAAIKVHFLDESGLTVIAEPGRFFAETAFTLATNIIGKRVRGKLREYWIN 321

Query: 317 DGVYGSMNCIINDHTAVVTCSPLAATSNPQNLTCTNAEVYKSTVFGPTCDALDTISTGYW 376
           DG+YGSMNCI+ DH A VT +PLA TSN  N TC   + Y STVFGPTCDALDTI TG+ 
Sbjct: 322 DGIYGSMNCILYDH-ATVTATPLACTSNRSNPTCRGGKTYTSTVFGPTCDALDTILTGHQ 381

Query: 377 LPDMEVDDWLLFPNMGAYTSATGTNFNGFTTSSIPTHLAYSNP 378
           LP+++V+DWLLFPNMGAYT++ G+NFNGF TS+IPTHLA+S P
Sbjct: 382 LPELQVNDWLLFPNMGAYTASAGSNFNGFNTSAIPTHLAFSPP 423

The following BLAST results are available for this feature:

BLAST of Lsi08G012870 vs. Swiss-Prot


Match Name	E-value	Identity	Description
DCOR_DATST	2.8e-117	53.04	Ornithine decarboxylase OS=Datura stramonium PE=2 SV=1	[more]
DCOR_CAPAN	1.9e-86	44.58	Ornithine decarboxylase OS=Capsicum annuum GN=ODC PE=2 SV=1	[more]
DCOR_TRYBB	1.3e-71	39.52	Ornithine decarboxylase OS=Trypanosoma brucei brucei PE=1 SV=2	[more]
DCOR_SOLLC	2.0e-67	54.47	Ornithine decarboxylase OS=Solanum lycopersicum GN=ODC PE=2 SV=2	[more]
DCOR_SCHPO	1.8e-63	37.98	Ornithine decarboxylase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) G...	[more]

BLAST of Lsi08G012870 vs. TrEMBL


Match Name	E-value	Identity	Description
B9H5C8_POPTR	2.2e-129	59.25	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s26760g PE=3 SV=2	[more]
A0A061FL05_THECC	1.9e-125	58.46	Pyridoxal-dependent decarboxylase family protein, putative OS=Theobroma cacao GN...	[more]
A2TBH8_THECC	2.1e-124	58.21	Putative ornithine decarboxylase OS=Theobroma cacao PE=2 SV=1	[more]
W9RN11_9ROSA	8.9e-123	60.87	Ornithine decarboxylase OS=Morus notabilis GN=L484_011648 PE=3 SV=1	[more]
A0A0V0I7B4_SOLCH	1.1e-115	52.68	Putative ornithine decarboxylase-like OS=Solanum chacoense PE=3 SV=1	[more]

BLAST of Lsi08G012870 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi08G012870 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|566173405\|ref\|XP_002307756.2\|	3.1e-129	59.25	hypothetical protein POPTR_0005s26760g [Populus trichocarpa]	[more]
gi\|590594695\|ref\|XP_007017924.1\|	2.8e-125	58.46	Pyridoxal-dependent decarboxylase family protein, putative [Theobroma cacao]	[more]
gi\|124298701\|gb\|ABN04356.1\|	3.0e-124	58.21	putative ornithine decarboxylase [Theobroma cacao]	[more]
gi\|703117012\|ref\|XP_010101283.1\|	1.3e-122	60.87	Ornithine decarboxylase [Morus notabilis]	[more]
gi\|720032279\|ref\|XP_010266064.1\|	1.1e-121	55.33	PREDICTED: ornithine decarboxylase-like [Nelumbo nucifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0006596	polyamine biosynthetic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0003824	catalytic activity

Vocabulary: **INTERPRO**
Term	Definition
IPR022653	De-COase2_pyr-phos_BS
IPR022644	De-COase2_N
IPR022643	De-COase2_C
IPR009006	Ala_racemase/Decarboxylase_C
IPR002433	Orn_de-COase
IPR000183	Orn/DAP/Arg_de-COase

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006525	arginine metabolic process
biological_process	GO:0006560	proline metabolic process
biological_process	GO:0033387	putrescine biosynthetic process from ornithine
biological_process	GO:0006596	polyamine biosynthetic process
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0004586	ornithine decarboxylase activity
molecular_function	GO:0003824	catalytic activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi08G012870.1	Lsi08G012870.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000183	Ornithine/DAP/Arg decarboxylase	PRINTS	PR01179	ODADCRBXLASE	coord: 77..95 score: 6.0E-21coord: 200..213 score: 6.0E-21coord: 350..363 score: 6.0E-21coord: 97..109 score: 6.0
IPR002433	Ornithine decarboxylase	PRINTS	PR01182	ORNDCRBXLASE	coord: 149..171 score: 8.2E-51coord: 49..73 score: 8.2E-51coord: 119..143 score: 8.2E-51coord: 317..327 score: 8.2E-51coord: 337..350 score: 8.2E-51coord: 75..102 score: 8.2
IPR009006	Alanine racemase/group IV decarboxylase, C-terminal	GENE3D	G3DSA:2.40.37.10		coord: 243..365 score: 2.9
IPR009006	Alanine racemase/group IV decarboxylase, C-terminal	unknown	SSF50621	Alanine racemase C-terminal domain-like	coord: 242..365 score: 1.09
IPR022643	Orn/DAP/Arg decarboxylase 2, C-terminal	PFAM	PF00278	Orn_DAP_Arg_deC	coord: 255..366 score: 1.7
IPR022644	Orn/DAP/Arg decarboxylase 2, N-terminal	PFAM	PF02784	Orn_Arg_deC_N	coord: 61..240 score: 1.4
IPR022653	Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site	PROSITE	PS00878	ODR_DC_2_1	coord: 77..95 scor
None	No IPR available	PANTHER	PTHR11482	ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE	coord: 36..368 score: 7.2E
None	No IPR available	PANTHER	PTHR11482:SF6	ORNITHINE DECARBOXYLASE 1-RELATED	coord: 36..368 score: 7.2E

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi08G012870	Cucumber (Gy14) v1	cgylsiB638
Lsi08G012870	Cucurbita maxima (Rimu)	cmalsiB184
Lsi08G012870	Cucurbita maxima (Rimu)	cmalsiB739
Lsi08G012870	Cucurbita moschata (Rifu)	cmolsiB175
Lsi08G012870	Cucurbita moschata (Rifu)	cmolsiB731
Lsi08G012870	Cucurbita pepo (Zucchini)	cpelsiB100
Lsi08G012870	Cucurbita pepo (Zucchini)	cpelsiB685
Lsi08G012870	Wild cucumber (PI 183967)	cpilsiB142
Lsi08G012870	Cucumber (Chinese Long) v2	culsiB143
Lsi08G012870	Melon (DHL92) v3.5.1	lsimeB474
Lsi08G012870	Watermelon (Charleston Gray)	lsiwcgB438
Lsi08G012870	Watermelon (97103) v1	lsiwmB465
Lsi08G012870	Cucumber (Gy14) v2	cgyblsiB130
Lsi08G012870	Melon (DHL92) v3.6.1	lsimedB493
Lsi08G012870	Silver-seed gourd	carlsiB128
Lsi08G012870	Silver-seed gourd	carlsiB898
Lsi08G012870	Cucumber (Chinese Long) v3	cuclsiB156
Lsi08G012870	Watermelon (97103) v2	lsiwmbB444
Lsi08G012870	Wax gourd	lsiwgoB592