Lsi08G012740 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi08G012740
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description40S ribosomal protein S26-1
Locationchr08 : 21147083 .. 21147472 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTTTCAAGCGCAGGAATGGTGGACGCAACAAGCATGGACGCGGACACGTGAAATTTATCCGCTGTTCCAACTGCGGCAAATGCTGCCCTAAGGACAAGGCCATCAAGAGGTTCCTTGTCAGGAACATCGTGGAACAGGCAGCTGTTAGGGATGTTCAGGAAGCCTGTGTCTATGATCAATACACTCTTCCTAAGCTTTATGCCAAGATGCAGTACTGTGTTTCTTGTGCTATCCACTCTCACGTTGTGAGGGTTCGATCACGCACTGACAGGAGGAACCGTGAGCCTCCACAGCGATTCATTAGACGCAGGGATGATGCACCAAAGCCTGGACAGCCAGGACAGGCCCCTCGTGTTGGAGCTGGTGGAGCTCCACCCCGTGCTTGA

mRNA sequence

ATGACTTTCAAGCGCAGGAATGGTGGACGCAACAAGCATGGACGCGGACACGTGAAATTTATCCGCTGTTCCAACTGCGGCAAATGCTGCCCTAAGGACAAGGCCATCAAGAGGTTCCTTGTCAGGAACATCGTGGAACAGGCAGCTGTTAGGGATGTTCAGGAAGCCTGTGTCTATGATCAATACACTCTTCCTAAGCTTTATGCCAAGATGCAGTACTGTGTTTCTTGTGCTATCCACTCTCACGTTGTGAGGGTTCGATCACGCACTGACAGGAGGAACCGTGAGCCTCCACAGCGATTCATTAGACGCAGGGATGATGCACCAAAGCCTGGACAGCCAGGACAGGCCCCTCGTGTTGGAGCTGGTGGAGCTCCACCCCGTGCTTGA

Coding sequence (CDS)

ATGACTTTCAAGCGCAGGAATGGTGGACGCAACAAGCATGGACGCGGACACGTGAAATTTATCCGCTGTTCCAACTGCGGCAAATGCTGCCCTAAGGACAAGGCCATCAAGAGGTTCCTTGTCAGGAACATCGTGGAACAGGCAGCTGTTAGGGATGTTCAGGAAGCCTGTGTCTATGATCAATACACTCTTCCTAAGCTTTATGCCAAGATGCAGTACTGTGTTTCTTGTGCTATCCACTCTCACGTTGTGAGGGTTCGATCACGCACTGACAGGAGGAACCGTGAGCCTCCACAGCGATTCATTAGACGCAGGGATGATGCACCAAAGCCTGGACAGCCAGGACAGGCCCCTCGTGTTGGAGCTGGTGGAGCTCCACCCCGTGCTTGA

Protein sequence

MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRFIRRRDDAPKPGQPGQAPRVGAGGAPPRA
Homology
[Close]
BLAST of Lsi08G012740 vs. Swiss-Prot
Match: RS263_ARATH (40S ribosomal protein S26-3 OS=Arabidopsis thaliana GN=RPS26C PE=2 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 1.9e-54
Identity = 110/131 (83.97%), Postives = 116/131 (88.55%), Query Frame = 1 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHVK IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRFIRRRDDAPKPGQPGQAPRV 120
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR++D PKP QPGQAPR 
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPAQPGQAPR- 120

Query: 121 GAGGAP--PRA 130
            AGGAP  PRA
Sbjct: 121 PAGGAPAAPRA 130

[Close]
BLAST of Lsi08G012740 vs. Swiss-Prot
Match: RS261_ARATH (40S ribosomal protein S26-1 OS=Arabidopsis thaliana GN=RPS26A PE=2 SV=2)

HSP 1 Score: 211.5 bits (537), Expect = 5.6e-54
Identity = 104/125 (83.20%), Postives = 110/125 (88.00%), Query Frame = 1 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRFIRRRDDAPKPGQPGQAPRV 120
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR++D PKPGQPGQAPR 
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFTRRKEDTPKPGQPGQAPRP 120

Query: 121 GAGGA 126
              GA
Sbjct: 121 AGPGA 125

[Close]
BLAST of Lsi08G012740 vs. Swiss-Prot
Match: RS262_ARATH (40S ribosomal protein S26-2 OS=Arabidopsis thaliana GN=RPS26B PE=2 SV=2)

HSP 1 Score: 210.3 bits (534), Expect = 1.3e-53
Identity = 105/129 (81.40%), Postives = 111/129 (86.05%), Query Frame = 1 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRFIRRRDDAPKPGQPGQAPRV 120
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR++D PKPGQPGQAPR 
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPGQPGQAPRP 120

Query: 121 GAGGAPPRA 130
              GA   A
Sbjct: 121 AGPGAAAAA 129

[Close]
BLAST of Lsi08G012740 vs. Swiss-Prot
Match: RS26_ORYSJ (40S ribosomal protein S26 OS=Oryza sativa subsp. japonica GN=RPS26 PE=2 SV=2)

HSP 1 Score: 191.8 bits (486), Expect = 4.6e-48
Identity = 96/127 (75.59%), Postives = 109/127 (85.83%), Query Frame = 1 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVK+IRCSNC KCCPKDKAIKRF VRNIVEQAA+RDVQEACV+D
Sbjct: 1   MTFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFQVRNIVEQAAIRDVQEACVHD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRFIRRRDDAPKPGQP-GQAPR 120
            Y LPKLYAK+ +CVSCAIH+H+VRVRSR +RR+R PP+RF RRR+D P+  +P G AP 
Sbjct: 61  GYVLPKLYAKVHHCVSCAIHAHIVRVRSRENRRDRRPPERF-RRREDRPQGPRPGGGAPA 120

Query: 121 VGAGGAP 127
            G   AP
Sbjct: 121 PGGAAAP 126

[Close]
BLAST of Lsi08G012740 vs. Swiss-Prot
Match: RS26_CAEEL (40S ribosomal protein S26 OS=Caenorhabditis elegans GN=rps-26 PE=3 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 1.9e-38
Identity = 80/118 (67.80%), Postives = 92/118 (77.97%), Query Frame = 1 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRN GRNK  RGHV FIRC+NCG+CCPKDKAIK+F+VRNIVE AAVRD+ +A  Y 
Sbjct: 1   MTFKRRNHGRNKKNRGHVAFIRCTNCGRCCPKDKAIKKFVVRNIVEAAAVRDIGDASAYT 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRFIRRRDDAPKPGQPGQAP 119
           QY LPKLY K+ YC++CAIHS VVR RSR  RR+R PP RF  +R  A +PG PG  P
Sbjct: 61  QYALPKLYHKLHYCIACAIHSKVVRNRSREARRDRNPPPRF-GQRAAAARPGAPGPRP 117

[Close]
BLAST of Lsi08G012740 vs. TrEMBL
Match: A0A0A0KDG9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014520 PE=4 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 2.2e-65
Identity = 126/129 (97.67%), Postives = 126/129 (97.67%), Query Frame = 1 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRFIRRRDDAPKPGQPGQAPRV 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRR REPPQRFIRRRDDAPKPGQ GQ PRV
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQAGQNPRV 120

Query: 121 GAGGAPPRA 130
           GAGGAPPRA
Sbjct: 121 GAGGAPPRA 129

[Close]
BLAST of Lsi08G012740 vs. TrEMBL
Match: I3SYN8_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 6.0e-63
Identity = 121/129 (93.80%), Postives = 123/129 (95.35%), Query Frame = 1 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRFIRRRDDAPKPGQPGQAPRV 120
           QYTLPKLY KMQYCVSCAIHSHVVRVRSRTDRR R+PPQRFIRRRDDAP+PGQPGQAPR 
Sbjct: 61  QYTLPKLYVKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRRDDAPRPGQPGQAPRP 120

Query: 121 GAGGAPPRA 130
              GAPPRA
Sbjct: 121 AGVGAPPRA 129

[Close]
BLAST of Lsi08G012740 vs. TrEMBL
Match: A0A072VBJ7_MEDTR (40S ribosomal S26-like protein OS=Medicago truncatula GN=MTR_3g094220 PE=4 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 2.3e-62
Identity = 120/127 (94.49%), Postives = 121/127 (95.28%), Query Frame = 1 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRFIRRRDDAPKPGQPGQAPRV 120
           QYTLPKLY KMQYCVSCAIHSHVVRVRSRTDRR REPPQRFIRRRDDAP+PGQPGQAPR 
Sbjct: 61  QYTLPKLYVKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPRPGQPGQAPRP 120

Query: 121 GAGGAPP 128
              GAPP
Sbjct: 121 AGPGAPP 127

[Close]
BLAST of Lsi08G012740 vs. TrEMBL
Match: A0A0R0KHW0_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_04G221400 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 6.7e-62
Identity = 120/129 (93.02%), Postives = 122/129 (94.57%), Query Frame = 1 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVY+
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRFIRRRDDAPKPGQPGQAPRV 120
           QYTLPKLY KMQYCVSCAIHSHVVRVRSRTDRR REPPQRFIRRRDDAP+PGQPGQAPR 
Sbjct: 61  QYTLPKLYVKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPRPGQPGQAPRP 120

Query: 121 GAGGAPPRA 130
              GAP RA
Sbjct: 121 AGVGAPARA 129

[Close]
BLAST of Lsi08G012740 vs. TrEMBL
Match: C6T4K2_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 1.1e-61
Identity = 119/129 (92.25%), Postives = 122/129 (94.57%), Query Frame = 1 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVY+
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRFIRRRDDAPKPGQPGQAPRV 120
           QYT+PKLY KMQYCVSCAIHSHVVRVRSRTDRR REPPQRFIRRRDDAP+PGQPGQAPR 
Sbjct: 61  QYTIPKLYVKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPRPGQPGQAPRP 120

Query: 121 GAGGAPPRA 130
              GAP RA
Sbjct: 121 AGVGAPARA 129

[Close]
BLAST of Lsi08G012740 vs. TAIR10
Match: AT3G56340.1 (AT3G56340.1 Ribosomal protein S26e family protein)

HSP 1 Score: 213.0 bits (541), Expect = 1.1e-55
Identity = 110/131 (83.97%), Postives = 116/131 (88.55%), Query Frame = 1 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHVK IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRFIRRRDDAPKPGQPGQAPRV 120
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR++D PKP QPGQAPR 
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPAQPGQAPR- 120

Query: 121 GAGGAP--PRA 130
            AGGAP  PRA
Sbjct: 121 PAGGAPAAPRA 130

[Close]
BLAST of Lsi08G012740 vs. TAIR10
Match: AT2G40590.1 (AT2G40590.1 Ribosomal protein S26e family protein)

HSP 1 Score: 211.5 bits (537), Expect = 3.2e-55
Identity = 104/125 (83.20%), Postives = 110/125 (88.00%), Query Frame = 1 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRFIRRRDDAPKPGQPGQAPRV 120
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR++D PKPGQPGQAPR 
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFTRRKEDTPKPGQPGQAPRP 120

Query: 121 GAGGA 126
              GA
Sbjct: 121 AGPGA 125

[Close]
BLAST of Lsi08G012740 vs. TAIR10
Match: AT2G40510.1 (AT2G40510.1 Ribosomal protein S26e family protein)

HSP 1 Score: 210.3 bits (534), Expect = 7.0e-55
Identity = 105/129 (81.40%), Postives = 111/129 (86.05%), Query Frame = 1 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+
Sbjct: 1   MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVEQAAIRDVQEASVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRFIRRRDDAPKPGQPGQAPRV 120
            YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP RF RR++D PKPGQPGQAPR 
Sbjct: 61  GYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRTPPPRFARRKEDTPKPGQPGQAPRP 120

Query: 121 GAGGAPPRA 130
              GA   A
Sbjct: 121 AGPGAAAAA 129

[Close]
BLAST of Lsi08G012740 vs. NCBI nr
Match: gi|659113823|ref|XP_008456772.1| (PREDICTED: 40S ribosomal protein S26-3-like [Cucumis melo])

HSP 1 Score: 261.5 bits (667), Expect = 7.6e-67
Identity = 128/129 (99.22%), Postives = 128/129 (99.22%), Query Frame = 1 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRFIRRRDDAPKPGQPGQAPRV 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRFIRRRDDAPKPGQPGQ PRV
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRFIRRRDDAPKPGQPGQNPRV 120

Query: 121 GAGGAPPRA 130
           GAGGAPPRA
Sbjct: 121 GAGGAPPRA 129

[Close]
BLAST of Lsi08G012740 vs. NCBI nr
Match: gi|449441254|ref|XP_004138397.1| (PREDICTED: 40S ribosomal protein S26-3 [Cucumis sativus])

HSP 1 Score: 256.1 bits (653), Expect = 3.2e-65
Identity = 126/129 (97.67%), Postives = 126/129 (97.67%), Query Frame = 1 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRFIRRRDDAPKPGQPGQAPRV 120
           QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRR REPPQRFIRRRDDAPKPGQ GQ PRV
Sbjct: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPKPGQAGQNPRV 120

Query: 121 GAGGAPPRA 130
           GAGGAPPRA
Sbjct: 121 GAGGAPPRA 129

[Close]
BLAST of Lsi08G012740 vs. NCBI nr
Match: gi|388514637|gb|AFK45380.1| (unknown [Lotus japonicus])

HSP 1 Score: 248.1 bits (632), Expect = 8.6e-63
Identity = 121/129 (93.80%), Postives = 123/129 (95.35%), Query Frame = 1 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRFIRRRDDAPKPGQPGQAPRV 120
           QYTLPKLY KMQYCVSCAIHSHVVRVRSRTDRR R+PPQRFIRRRDDAP+PGQPGQAPR 
Sbjct: 61  QYTLPKLYVKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRRDDAPRPGQPGQAPRP 120

Query: 121 GAGGAPPRA 130
              GAPPRA
Sbjct: 121 AGVGAPPRA 129

[Close]
BLAST of Lsi08G012740 vs. NCBI nr
Match: gi|922382606|ref|XP_013461530.1| (40S ribosomal S26-like protein [Medicago truncatula])

HSP 1 Score: 246.1 bits (627), Expect = 3.3e-62
Identity = 120/127 (94.49%), Postives = 121/127 (95.28%), Query Frame = 1 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRFIRRRDDAPKPGQPGQAPRV 120
           QYTLPKLY KMQYCVSCAIHSHVVRVRSRTDRR REPPQRFIRRRDDAP+PGQPGQAPR 
Sbjct: 61  QYTLPKLYVKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPRPGQPGQAPRP 120

Query: 121 GAGGAPP 128
              GAPP
Sbjct: 121 AGPGAPP 127

[Close]
BLAST of Lsi08G012740 vs. NCBI nr
Match: gi|947115885|gb|KRH64187.1| (hypothetical protein GLYMA_04G221400 [Glycine max])

HSP 1 Score: 244.6 bits (623), Expect = 9.6e-62
Identity = 120/129 (93.02%), Postives = 122/129 (94.57%), Query Frame = 1 

Query: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD 60
           MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVY+
Sbjct: 1   MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYE 60

Query: 61  QYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNREPPQRFIRRRDDAPKPGQPGQAPRV 120
           QYTLPKLY KMQYCVSCAIHSHVVRVRSRTDRR REPPQRFIRRRDDAP+PGQPGQAPR 
Sbjct: 61  QYTLPKLYVKMQYCVSCAIHSHVVRVRSRTDRRKREPPQRFIRRRDDAPRPGQPGQAPRP 120

Query: 121 GAGGAPPRA 130
              GAP RA
Sbjct: 121 AGVGAPARA 129

The following BLAST results are available for this feature:
BLAST of Lsi08G012740 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RS263_ARATH1.9e-5483.9740S ribosomal protein S26-3 OS=Arabidopsis thaliana GN=RPS26C PE=2 SV=1[more]
RS261_ARATH5.6e-5483.2040S ribosomal protein S26-1 OS=Arabidopsis thaliana GN=RPS26A PE=2 SV=2[more]
RS262_ARATH1.3e-5381.4040S ribosomal protein S26-2 OS=Arabidopsis thaliana GN=RPS26B PE=2 SV=2[more]
RS26_ORYSJ4.6e-4875.5940S ribosomal protein S26 OS=Oryza sativa subsp. japonica GN=RPS26 PE=2 SV=2[more]
RS26_CAEEL1.9e-3867.8040S ribosomal protein S26 OS=Caenorhabditis elegans GN=rps-26 PE=3 SV=1[more]
BLAST of Lsi08G012740 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KDG9_CUCSA2.2e-6597.67Uncharacterized protein OS=Cucumis sativus GN=Csa_6G014520 PE=4 SV=1[more]
I3SYN8_LOTJA6.0e-6393.80Uncharacterized protein OS=Lotus japonicus PE=2 SV=1[more]
A0A072VBJ7_MEDTR2.3e-6294.4940S ribosomal S26-like protein OS=Medicago truncatula GN=MTR_3g094220 PE=4 SV=1[more]
A0A0R0KHW0_SOYBN6.7e-6293.02Uncharacterized protein OS=Glycine max GN=GLYMA_04G221400 PE=4 SV=1[more]
C6T4K2_SOYBN1.1e-6192.25Putative uncharacterized protein OS=Glycine max PE=2 SV=1[more]
BLAST of Lsi08G012740 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G56340.11.1e-5583.97 Ribosomal protein S26e family protein[more]
AT2G40590.13.2e-5583.20 Ribosomal protein S26e family protein[more]
AT2G40510.17.0e-5581.40 Ribosomal protein S26e family protein[more]
BLAST of Lsi08G012740 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659113823|ref|XP_008456772.1|7.6e-6799.22PREDICTED: 40S ribosomal protein S26-3-like [Cucumis melo][more]
gi|449441254|ref|XP_004138397.1|3.2e-6597.67PREDICTED: 40S ribosomal protein S26-3 [Cucumis sativus][more]
gi|388514637|gb|AFK45380.1|8.6e-6393.80unknown [Lotus japonicus][more]
gi|922382606|ref|XP_013461530.1|3.3e-6294.4940S ribosomal S26-like protein [Medicago truncatula][more]
gi|947115885|gb|KRH64187.1|9.6e-6293.02hypothetical protein GLYMA_04G221400 [Glycine max][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR000892Ribosomal_S26e
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003729 mRNA binding
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi08G012740.1Lsi08G012740.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000892Ribosomal protein S26ePANTHERPTHR1253840S RIBOSOMAL PROTEIN S26coord: 2..125
score: 1.7
IPR000892Ribosomal protein S26ePFAMPF01283Ribosomal_S26ecoord: 1..106
score: 6.7
IPR000892Ribosomal protein S26ePROSITEPS00733RIBOSOMAL_S26Ecoord: 73..80
scor
NoneNo IPR availablePANTHERPTHR12538:SF1SUBFAMILY NOT NAMEDcoord: 2..125
score: 1.7

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi08G012740Watermelon (97103) v2lsiwmbB444
Lsi08G012740Wax gourdlsiwgoB592
Lsi08G012740Cucurbita maxima (Rimu)cmalsiB184
Lsi08G012740Cucurbita maxima (Rimu)cmalsiB739
Lsi08G012740Cucurbita moschata (Rifu)cmolsiB175
Lsi08G012740Cucurbita moschata (Rifu)cmolsiB731
Lsi08G012740Cucurbita pepo (Zucchini)cpelsiB100
Lsi08G012740Cucurbita pepo (Zucchini)cpelsiB685
Lsi08G012740Melon (DHL92) v3.5.1lsimeB474
Lsi08G012740Watermelon (Charleston Gray)lsiwcgB438
Lsi08G012740Watermelon (97103) v1lsiwmB465
Lsi08G012740Melon (DHL92) v3.6.1lsimedB493
Lsi08G012740Silver-seed gourdcarlsiB128
Lsi08G012740Silver-seed gourdcarlsiB898