Lsi08G012680 (gene) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCATCGAGAATTATAAACTTGGATTATCTTGACTGTAGGGTTGCTCGGTTTGTTGGTAGTTAGATATGAACTCACTAGGGATAAAATAGAGAACAATGTGATTGCATTTGCCCCCAATATTATGCAAACCTCACGACCTCCTTGTGCTTGATCAAGTCTAGATCTTCATTTGTTTTGTTATTTTAATCCAGATGATGTCTTATTGTTTAAAAAAAAAAATCCAGATGTGTCAAGAATATTTATGACCCAATTGTAACTCTTTTTACTAAATGGTAACAGCAATGTTTTTGTTGTTTATTAACTATATTTAATAGCACAATGGCTGCTTCTCGGGGTGGGAGGCCATTTTCAACAGACTCTAATAAGATCGACAAACCATTCAAGGTTGAGGAAGCTGAAACAGTTGATGTTCCCCCACCTCCAACTGAGAAGGTACATGAAATGAAGGCTAGGGGTTATTCTGTCTATATCTTTGACTCTGATCTTTGTTATCTCCGGGGTGTGTGCATTTGATCAGTTGCTGGTGCTGGGTGGAAATGGATTTGTGGGCTCCCATATCTGTCAAGAAGCTCTAAATCGTGGCCTTACAGTTGCTAGCCTTAGTAGGTACGTTTCTATGTAAGAGCGTACCATGTAACTGTGGCTTGTGTGTCACATAGATTGTTTCGCGTAAGAGCTACACTCTTAACTGATCATGTAAATCTGTATATCGTTCCTTCCTATCGAGTGAACTGCTTGTAATCGGTACACTTTAATTTTTATTAAATGTTGAATATGGAAAGTAGGAAAGTATCAGCTAAAAAGCATTAAGAAAAGAACTCTTTATTTGGAGACTGGAGTGCTATATGCTGTCTTGCAAATCACTATTTACTCTATAAATTGTAGTGCTTTTTATTTAATCTATAGGAGAAATCAGGCCAGAACATACATGATTATAGATAAGGAAATATGATTTGAGTTCTGTTTTGTTGTTTAATAAATGAAAACTTCAATGTCTTTGTTCAGTTTCCTAGTGTTGGAAGCTCTATTCTGACATCACAATCATTGGTGTTTTGTTATCATTGTTAGGTCGGGTAGATCATCAATACGTGATTCTTGGGCTAACAGTGTAATTTGGCATCAAGGTTTGATTCCATTTAAGGTGTTTATAACTGTTATATTTGTGGGGTACATATATAATGATAATGCCTTCACTCTTTTTCCCATTGCCAGGAAACCTTCTTTCACCTGATTCATTGAATGAAGCTTTTGACGGTGTTACAGCTGTTGTAAGTAGTCCTCAACTTGTTCAAATTTGTACATAATGATTAAAATACAAATTAGTTACAACTTTATTGTGAATACATTAGTCCAGAGATAAATTGAATGACTTGACTTCTATGTGCACACTTCTTGATTAACTATCAGGGCTCTTTTGGCAGACTCCTAGAAGCCTTTATCTCAGTTGTGATCTGATACGAATTAATTTATGTGCACAACTAAATAAGTACTAAGTAGCATCTAGTTAAGGGAGGATTCTCTACTTGTATATAGCACTTCTGGTTTCTGTATATATACCATTTCTTATGCCTGCAAATTAATTTCTTTACTTGTGCAGTGTCTTACTTAGGGGAGGATTCTCTTGTTCACGAGTTTTGATAAATTATAGTATTATATTTTTTAGATCTCTTGCATTGGTGGTTTTGGCTCTAATTCTCAAATGTACAAGATCAATGGGACGGCAAATATCAATGCAATCAGAGTTGCTTCAGATAAAGGTGCAGTTTTTATGTGGCTGTAAATTTATGAAAATGAACTGAAATTATGTTGTCTAGACTCGTCTGTTTCCTGTCAAAATTTATCTTTCATTGCTTTGCTAGCATGTCACCTCATGTCAATAAACACGCTTCCTGTGCCGAGTAATTTTCTATATTCCCCGTCACAAATTTATGAAACTGATCTGATGCTTGAGTGTTTCTTTAGAATTTACAACTATCTTTTTCTTTCTTGTGCCATAGTTTTTGTTCCTAACTAAATGTTTTGGTCTCCATCTCACTAGTCTAATTTTTGGATCCTACCAATTATTTTTAACTTCAAGATTTCTTCGAATGATTGCAGTTAATTTAATATTTGCTATTACTTATGACTCTTACCAAGGCAATACCAATGCCTCACAGGTGTGAAGAGATTTGTCTATATCTCTGCTGCTGATTTTGGCTTGGCTAATTACTTGCTACAGGGATATTATGAGGGAAAGGTAACTTTTCTATTCCCTTCATCCCGAGAGTTGTTAATTATTCAAGATCTTGGACACATATATCAATGCCCTTCTTGATCAACTCAAACTATGACTGGGGTCTTTTAAGGAACAAATGTTGAACACCGATGAAGAAATTGACTCATTTAACTTCCACCAGAAATGTTGGTTACCAATCTTTTCTTTTTGTGCAGATGGAAGCTCTATATTATATTGTTTTCTTATGAATATCTTTTTCACGTTAATGTATATTTGGATCGATGTAGCTCATGCAAAATCTGTGTTTTGGTTTATGTAGCGAGCGGCTGAGACAGAACTCCTCACTAAATTTCCTTATGGAGGTTTGATCTCTGATCTATCAATGTTACCTTCAAATTCTTAGCTTGCATATGATTGTGCAGTTCTGTATTGCCTGTATTGCATAAGATGAATGTATACTCCCGATACTCTTTCATTTAGCTGCTAGCAAGGGATCTTACTTGTTGGCTTTCGTGAACCTGTTTTCCTTTTCGAAATTATCTTTTCTTTTACGGATAGCAAATCAGTGGAGAATAAAGCGTTCTTTAATGTACATTTTCAGGAGTGATTTTGAGGCCGGGATTTATTTATGGGACCCGTAATGTTGGGAGCGTGAAGTTACCTCTGGGAGTAATTGGTTCTCCTCTGGAAATGGTAACTTGTGGTTTCTTCGTTTGTTTTCCTTATAGGCTTTCTATTATGCTATGAACTTCGGCCTGAGTTCCCAGTTTCCAAAATTGGTCGTATTTCTAATTTCTTTTTCTTCTTACTATTGTTATCAGTTTAAACATACAAAAAAAGAAAAAAGAAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACTAATTAAAATAGGGCAATTATGAGTGTAATGCAAGAAAAAATCAAATTTATAAGCTTATATGAGGGCTGAAATTAAATTTAAAAGAAGCAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAGACCACCACAATTAAGCGAGCATTGAACGACCAGTTTGATAATTATTTAGGTCTTGATAACCATTTGGTTTTTGAAAATTAAGCCTATTTTCTCATAATTTTTTACAATAGTTTGCATCTTTCTTTAGTAAAGAGTTGAATTTTTAGCCAAATTCTAAAAATAAAAACAAGCTTTTAAAAACTACTTTTTTTTTTTAATTTTCAAAACATTGGTAAAAAATAAATAACAAAACAATCAATTCATAGGTGAAAATAGTGTTTATAAGCTTAATTTTAAAAAACTAAAAACCAAAAATCAAATAGTTACCAAATGAGACTTTAGTTTTTGGTTTTTAAAAATTAAGCTTGTAAACACTACTTCAGCTCATTAGTTTCTTTATTTTATTGTCTAGTTTGTAGGGTGTCACCCGTACTTAAAAACTTGTTTTTGTTGTTTGAAGTTGACTTACAATTCAATTGTTCAAATGTTTACTAGGAAAGATGAAAACAACAATTATAAAAAAAATGGTGACAAAATCAGGAAATTTTCTGAAATAAAAAACTAAATTGTTATCAAATAGAACCTAAATTTGAATCGTTTATTCAGATTTGTTCAATTACTAAATTGACACAAACCCTTTTGTTTGTACTTCCGGGTTTATTATTTTTTGGACGAGTAAAATGGATCTGAACACGGGACATTCAGAGCTCTAAATCTGAATCAATTGTTGCGTGTCTTGCGTCATTGTCTTGTTATTGAATTACATTTTACAAGGCGGGCATACCAAAACAATGAATTTGGTAACAAAAACCAAAGCCTCTGCAATCCTCTGATCTTTTTCACACGTATAAAAATATTTCCCTGCAGGTTCTTCAACACGCCAAACCACTACACCAACTACCACTCGTTGGTCCTCTGTTTACTCCTCCGGTAAGTGTGACGTCGGTGGCGAGGGTTTCTGTTCGGGCAGCAACAGATCCTGTCTTTCCTCCCGGCATCATCGACATCTATGGCATACAACGATACAGTCAACACAAGTCAAAATAG ATGTCATCGAGAATTATAAACTTGGATTATCTTGACTGTAGGGTTGCTCGCACAATGGCTGCTTCTCGGGGTGGGAGGCCATTTTCAACAGACTCTAATAAGATCGACAAACCATTCAAGGTTGAGGAAGCTGAAACAGTTGATGTTCCCCCACCTCCAACTGAGAAGTTGCTGGTGCTGGGTGGAAATGGATTTGTGGGCTCCCATATCTGTCAAGAAGCTCTAAATCGTGGCCTTACAGTTGCTAGCCTTAGTAGGTCGGGTAGATCATCAATACGTGATTCTTGGGCTAACAGTGTAATTTGGCATCAAGGAAACCTTCTTTCACCTGATTCATTGAATGAAGCTTTTGACGGTGTTACAGCTGTTATCTCTTGCATTGGTGGTTTTGGCTCTAATTCTCAAATGTACAAGATCAATGGGACGGCAAATATCAATGCAATCAGAGTTGCTTCAGATAAAGGTGTGAAGAGATTTGTCTATATCTCTGCTGCTGATTTTGGCTTGGCTAATTACTTGCTACAGGGATATTATGAGGGAAAGCGAGCGGCTGAGACAGAACTCCTCACTAAATTTCCTTATGGAGGAGTGATTTTGAGGCCGGGATTTATTTATGGGACCCGTAATGTTGGGAGCGTGAAGTTACCTCTGGGAGTAATTGGTTCTCCTCTGGAAATGGTTCTTCAACACGCCAAACCACTACACCAACTACCACTCGTTGGTCCTCTGTTTACTCCTCCGGTAAGTGTGACGTCGGTGGCGAGGGTTTCTGTTCGGGCAGCAACAGATCCTGTCTTTCCTCCCGGCATCATCGACATCTATGGCATACAACGATACAGTCAACACAAGTCAAAATAG ATGTCATCGAGAATTATAAACTTGGATTATCTTGACTGTAGGGTTGCTCGCACAATGGCTGCTTCTCGGGGTGGGAGGCCATTTTCAACAGACTCTAATAAGATCGACAAACCATTCAAGGTTGAGGAAGCTGAAACAGTTGATGTTCCCCCACCTCCAACTGAGAAGTTGCTGGTGCTGGGTGGAAATGGATTTGTGGGCTCCCATATCTGTCAAGAAGCTCTAAATCGTGGCCTTACAGTTGCTAGCCTTAGTAGGTCGGGTAGATCATCAATACGTGATTCTTGGGCTAACAGTGTAATTTGGCATCAAGGAAACCTTCTTTCACCTGATTCATTGAATGAAGCTTTTGACGGTGTTACAGCTGTTATCTCTTGCATTGGTGGTTTTGGCTCTAATTCTCAAATGTACAAGATCAATGGGACGGCAAATATCAATGCAATCAGAGTTGCTTCAGATAAAGGTGTGAAGAGATTTGTCTATATCTCTGCTGCTGATTTTGGCTTGGCTAATTACTTGCTACAGGGATATTATGAGGGAAAGCGAGCGGCTGAGACAGAACTCCTCACTAAATTTCCTTATGGAGGAGTGATTTTGAGGCCGGGATTTATTTATGGGACCCGTAATGTTGGGAGCGTGAAGTTACCTCTGGGAGTAATTGGTTCTCCTCTGGAAATGGTTCTTCAACACGCCAAACCACTACACCAACTACCACTCGTTGGTCCTCTGTTTACTCCTCCGGTAAGTGTGACGTCGGTGGCGAGGGTTTCTGTTCGGGCAGCAACAGATCCTGTCTTTCCTCCCGGCATCATCGACATCTATGGCATACAACGATACAGTCAACACAAGTCAAAATAG MSSRIINLDYLDCRVARTMAASRGGRPFSTDSNKIDKPFKVEEAETVDVPPPPTEKLLVLGGNGFVGSHICQEALNRGLTVASLSRSGRSSIRDSWANSVIWHQGNLLSPDSLNEAFDGVTAVISCIGGFGSNSQMYKINGTANINAIRVASDKGVKRFVYISAADFGLANYLLQGYYEGKRAAETELLTKFPYGGVILRPGFIYGTRNVGSVKLPLGVIGSPLEMVLQHAKPLHQLPLVGPLFTPPVSVTSVARVSVRAATDPVFPPGIIDIYGIQRYSQHKSK
BLAST of Lsi08G012680 vs. Swiss-Prot
Match: Y1222_ARATH (Uncharacterized protein At1g32220, chloroplastic OS=Arabidopsis thaliana GN=At1g32220 PE=2 SV=1) HSP 1 Score: 196.1 bits (497), Expect = 5.4e-49 Identity = 99/218 (45.41%), Postives = 140/218 (64.22%), Query Frame = 1
BLAST of Lsi08G012680 vs. Swiss-Prot
Match: COQ11_YEAST (MIOREX complex component 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=COQ11 PE=1 SV=1) HSP 1 Score: 65.9 bits (159), Expect = 8.4e-10 Identity = 32/78 (41.03%), Postives = 45/78 (57.69%), Query Frame = 1
BLAST of Lsi08G012680 vs. Swiss-Prot
Match: YQJ9_SCHPO (Uncharacterized protein C1840.09 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1840.09 PE=3 SV=1) HSP 1 Score: 62.0 bits (149), Expect = 1.2e-08 Identity = 64/259 (24.71%), Postives = 100/259 (38.61%), Query Frame = 1
BLAST of Lsi08G012680 vs. Swiss-Prot
Match: FMP52_NEUCR (Protein fmp-52, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=fmp-52 PE=3 SV=1) HSP 1 Score: 60.5 bits (145), Expect = 3.5e-08 Identity = 51/163 (31.29%), Postives = 72/163 (44.17%), Query Frame = 1
BLAST of Lsi08G012680 vs. TrEMBL
Match: A0A0A0LML0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G383350 PE=4 SV=1) HSP 1 Score: 529.3 bits (1362), Expect = 3.0e-147 Identity = 261/268 (97.39%), Postives = 268/268 (100.00%), Query Frame = 1
BLAST of Lsi08G012680 vs. TrEMBL
Match: A0A067FIX1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g023205mg PE=4 SV=1) HSP 1 Score: 463.4 bits (1191), Expect = 2.0e-127 Identity = 229/279 (82.08%), Postives = 254/279 (91.04%), Query Frame = 1
BLAST of Lsi08G012680 vs. TrEMBL
Match: V4WAT3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009111mg PE=4 SV=1) HSP 1 Score: 463.4 bits (1191), Expect = 2.0e-127 Identity = 229/279 (82.08%), Postives = 254/279 (91.04%), Query Frame = 1
BLAST of Lsi08G012680 vs. TrEMBL
Match: A0A061GIN1_THECC (NAD(P)-binding Rossmann-fold superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_036856 PE=4 SV=1) HSP 1 Score: 461.8 bits (1187), Expect = 5.9e-127 Identity = 227/287 (79.09%), Postives = 255/287 (88.85%), Query Frame = 1
BLAST of Lsi08G012680 vs. TrEMBL
Match: B9RNR1_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0919940 PE=4 SV=1) HSP 1 Score: 461.5 bits (1186), Expect = 7.7e-127 Identity = 222/267 (83.15%), Postives = 251/267 (94.01%), Query Frame = 1
BLAST of Lsi08G012680 vs. TAIR10
Match: AT5G10730.1 (AT5G10730.1 NAD(P)-binding Rossmann-fold superfamily protein) HSP 1 Score: 453.8 bits (1166), Expect = 8.1e-128 Identity = 218/269 (81.04%), Postives = 250/269 (92.94%), Query Frame = 1
BLAST of Lsi08G012680 vs. TAIR10
Match: AT5G15910.1 (AT5G15910.1 NAD(P)-binding Rossmann-fold superfamily protein) HSP 1 Score: 307.4 bits (786), Expect = 9.4e-84 Identity = 145/225 (64.44%), Postives = 187/225 (83.11%), Query Frame = 1
BLAST of Lsi08G012680 vs. TAIR10
Match: AT1G32220.1 (AT1G32220.1 NAD(P)-binding Rossmann-fold superfamily protein) HSP 1 Score: 196.1 bits (497), Expect = 3.0e-50 Identity = 99/218 (45.41%), Postives = 140/218 (64.22%), Query Frame = 1
BLAST of Lsi08G012680 vs. NCBI nr
Match: gi|449441836|ref|XP_004138688.1| (PREDICTED: uncharacterized protein At1g32220, chloroplastic [Cucumis sativus]) HSP 1 Score: 529.3 bits (1362), Expect = 4.3e-147 Identity = 261/268 (97.39%), Postives = 268/268 (100.00%), Query Frame = 1
BLAST of Lsi08G012680 vs. NCBI nr
Match: gi|659089033|ref|XP_008445292.1| (PREDICTED: uncharacterized protein At1g32220, chloroplastic isoform X2 [Cucumis melo]) HSP 1 Score: 528.1 bits (1359), Expect = 9.6e-147 Identity = 261/268 (97.39%), Postives = 265/268 (98.88%), Query Frame = 1
BLAST of Lsi08G012680 vs. NCBI nr
Match: gi|659089031|ref|XP_008445291.1| (PREDICTED: uncharacterized protein At1g32220, chloroplastic isoform X1 [Cucumis melo]) HSP 1 Score: 510.8 bits (1314), Expect = 1.6e-141 Identity = 260/299 (86.96%), Postives = 265/299 (88.63%), Query Frame = 1
BLAST of Lsi08G012680 vs. NCBI nr
Match: gi|720005957|ref|XP_010257827.1| (PREDICTED: uncharacterized protein At1g32220, chloroplastic [Nelumbo nucifera]) HSP 1 Score: 465.7 bits (1197), Expect = 5.8e-128 Identity = 223/266 (83.83%), Postives = 250/266 (93.98%), Query Frame = 1
BLAST of Lsi08G012680 vs. NCBI nr
Match: gi|567916436|ref|XP_006450224.1| (hypothetical protein CICLE_v10009111mg [Citrus clementina]) HSP 1 Score: 463.4 bits (1191), Expect = 2.9e-127 Identity = 229/279 (82.08%), Postives = 254/279 (91.04%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
|