Lsi08G012270 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi08G012270
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr08 : 20724679 .. 20725741 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATAGTTGATTTTTTTCCTTTTTTTTTTTTTTTTTTTTTTGACAAAATATGATAGTTGTAATTTTAAATTGCAAAAATCACCATTGAATTTAAAATAGAGTGGTAGTTGCAATTACATCTTCAAACTTTTTCAATTGTAAAAAATTGAGCCTTCAAATTTATATAAATTTTAAAATTGGGTATTCAAACTTACAATAGTTGTAGAAAATGATAAAAATTGAACTTTCAAACTTACAATTAACTATTTAAGTTTAAGAGTTTGTAATACATGTATAAGTTTTAGAGTTTAATTTTTACGGTTGAAAGTTTGAGGGTGTAATTACAATTACTACTCTACTTTAGGATGATTTTTGTCATTTTTCCTAATTATATCTACATATACTTAATGAGAAAAGAGATAGAAGTGAGATTAGGCAGAGATTGTTATTGTAATATATTTATCATTATTAAACGAAACATAATCTCAAATTTAGACTGAACTAGTAGAAATAAAATAAAAATATTTAATGAGAACACCGCGGTAAAAGCGTCTCATAAGGATTTGTAGTTAGTAATCATAGAACCAACGCGTGATTTAACCAATAATCTTTATACGAAATATAATTCAAGAACCCCTAATTATTTCAATTCTCTAGTATGGGAAGGCAACAGACTTGTTTCCCAACGATTTGAGTATTTATTTCATCAACACCCAAGAAAGCAACACAGAAATTAATATATATGATATTTACAATTCCACTGGCAAGGGGGGAATTTACATCAAAAATCATCAAAAAAAATTAAAATTAAAATCTCAAAATCCGTGGTATGATGAATCAACCACAGGAGGAAATTGCGATTCCATCTTGAGATCCGGCGAATTTGGGAGGGGGAACAGGGTCCTTGATAGCCGGAGGGAATCTAGCCGTGAAATCTCTGAAGGGAAACTCATGGTCGTCACGGCAGTCGTCCTCAAAATTGAGGGCATAACTGGAAGAATCGTAGGAAAAGTCGACGGAGGCGAGGTACTTCCTCCGGCGGCGAGCTATCCGAGCAAGGAAATACCGGCACCGGTAAAGTAA

mRNA sequence

ATGATATATGGGAAGGCAACAGACTTGTTTCCCAACGATTTGAGTATTTATTTCATCAACACCCAAGAAAGCAACACAGAAATTAATATATATGATATTTACAATTCCACTGGCAAGGGGGGAATTTACATCAAAAATCATCAAAAAAAATTAAAATTAAAATCTCAAAATCCGTGGTATGATGAATCAACCACAGGAGGAAATTGCGATTCCATCTTGAGATCCGGCGAATTTGGGAGGGGGAACAGGGTCCTTGATAGCCGGAGGGAATCTAGCCGTGAAATCTCTGAAGGGAAACTCATGGTCGTCACGGCAGTCGTCCTCAAAATTGAGGGCATAACTGGAAGAATCGTAGGAAAAGTCGACGGAGGCGAGGTACTTCCTCCGGCGGCGAGCTATCCGAGCAAGGAAATACCGGCACCGGTAAAGTAA

Coding sequence (CDS)

ATGATATATGGGAAGGCAACAGACTTGTTTCCCAACGATTTGAGTATTTATTTCATCAACACCCAAGAAAGCAACACAGAAATTAATATATATGATATTTACAATTCCACTGGCAAGGGGGGAATTTACATCAAAAATCATCAAAAAAAATTAAAATTAAAATCTCAAAATCCGTGGTATGATGAATCAACCACAGGAGGAAATTGCGATTCCATCTTGAGATCCGGCGAATTTGGGAGGGGGAACAGGGTCCTTGATAGCCGGAGGGAATCTAGCCGTGAAATCTCTGAAGGGAAACTCATGGTCGTCACGGCAGTCGTCCTCAAAATTGAGGGCATAACTGGAAGAATCGTAGGAAAAGTCGACGGAGGCGAGGTACTTCCTCCGGCGGCGAGCTATCCGAGCAAGGAAATACCGGCACCGGTAAAGTAA

Protein sequence

MIYGKATDLFPNDLSIYFINTQESNTEINIYDIYNSTGKGGIYIKNHQKKLKLKSQNPWYDESTTGGNCDSILRSGEFGRGNRVLDSRRESSREISEGKLMVVTAVVLKIEGITGRIVGKVDGGEVLPPAASYPSKEIPAPVK
Homology
[Close]
BLAST of Lsi08G012270 vs. TrEMBL
Match: A0A0A0LMF3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G382470 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.0e-10
Identity = 43/72 (59.72%), Postives = 53/72 (73.61%), Query Frame = 1 

Query: 72  ILRSGEFGRGNRVLDSRRESSREISEGKLMVVTAVVLKIEGITGRIVGKVDGGEVLPPAA 131
           +LRSGEFG G      R ES+REISEG+LMV+  +V++I+GITGRIVGKV  G+ + PA 
Sbjct: 1   MLRSGEFGSG------RGESNREISEGELMVIMGMVVEIKGITGRIVGKVSRGKGVCPAT 60

Query: 132 SYPSKEIPAPVK 144
           S PSKEI A  K
Sbjct: 61  SKPSKEIAAAAK 66

[Close]
BLAST of Lsi08G012270 vs. NCBI nr
Match: gi|700207854|gb|KGN62973.1| (hypothetical protein Csa_2G382470 [Cucumis sativus])

HSP 1 Score: 74.7 bits (182), Expect = 1.5e-10
Identity = 43/72 (59.72%), Postives = 53/72 (73.61%), Query Frame = 1 

Query: 72  ILRSGEFGRGNRVLDSRRESSREISEGKLMVVTAVVLKIEGITGRIVGKVDGGEVLPPAA 131
           +LRSGEFG G      R ES+REISEG+LMV+  +V++I+GITGRIVGKV  G+ + PA 
Sbjct: 1   MLRSGEFGSG------RGESNREISEGELMVIMGMVVEIKGITGRIVGKVSRGKGVCPAT 60

Query: 132 SYPSKEIPAPVK 144
           S PSKEI A  K
Sbjct: 61  SKPSKEIAAAAK 66

The following BLAST results are available for this feature:
BLAST of Lsi08G012270 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi08G012270 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LMF3_CUCSA1.0e-1059.72Uncharacterized protein OS=Cucumis sativus GN=Csa_2G382470 PE=4 SV=1[more]
BLAST of Lsi08G012270 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi08G012270 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700207854|gb|KGN62973.1|1.5e-1059.72hypothetical protein Csa_2G382470 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi08G012270.1Lsi08G012270.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi08G012270Cucurbita maxima (Rimu)cmalsiB039
Lsi08G012270Cucurbita maxima (Rimu)cmalsiB184
Lsi08G012270Cucurbita maxima (Rimu)cmalsiB460
Lsi08G012270Cucurbita maxima (Rimu)cmalsiB739
Lsi08G012270Cucurbita moschata (Rifu)cmolsiB027
Lsi08G012270Cucurbita moschata (Rifu)cmolsiB175
Lsi08G012270Cucurbita moschata (Rifu)cmolsiB445
Lsi08G012270Cucurbita moschata (Rifu)cmolsiB731
Lsi08G012270Cucurbita pepo (Zucchini)cpelsiB100
Lsi08G012270Cucurbita pepo (Zucchini)cpelsiB651
Lsi08G012270Cucurbita pepo (Zucchini)cpelsiB685
Lsi08G012270Wild cucumber (PI 183967)cpilsiB139
Lsi08G012270Wild cucumber (PI 183967)cpilsiB317
Lsi08G012270Wild cucumber (PI 183967)cpilsiB318
Lsi08G012270Wild cucumber (PI 183967)cpilsiB551
Lsi08G012270Cucumber (Chinese Long) v2culsiB140
Lsi08G012270Cucumber (Chinese Long) v2culsiB318
Lsi08G012270Cucumber (Chinese Long) v2culsiB536
Lsi08G012270Melon (DHL92) v3.5.1lsimeB468
Lsi08G012270Melon (DHL92) v3.5.1lsimeB474
Lsi08G012270Melon (DHL92) v3.5.1lsimeB486
Lsi08G012270Watermelon (Charleston Gray)lsiwcgB434
Lsi08G012270Watermelon (Charleston Gray)lsiwcgB438
Lsi08G012270Watermelon (97103) v1lsiwmB465
Lsi08G012270Watermelon (97103) v1lsiwmB479
Lsi08G012270Watermelon (97103) v1lsiwmB484
Lsi08G012270Cucumber (Gy14) v2cgyblsiB126
Lsi08G012270Cucumber (Gy14) v2cgyblsiB290
Lsi08G012270Melon (DHL92) v3.6.1lsimedB493
Lsi08G012270Melon (DHL92) v3.6.1lsimedB505
Lsi08G012270Silver-seed gourdcarlsiB128
Lsi08G012270Silver-seed gourdcarlsiB580
Lsi08G012270Silver-seed gourdcarlsiB898
Lsi08G012270Cucumber (Chinese Long) v3cuclsiB152
Lsi08G012270Cucumber (Chinese Long) v3cuclsiB337
Lsi08G012270Cucumber (Chinese Long) v3cuclsiB338
Lsi08G012270Watermelon (97103) v2lsiwmbB440
Lsi08G012270Watermelon (97103) v2lsiwmbB444
Lsi08G012270Wax gourdlsiwgoB592
Lsi08G012270Wax gourdlsiwgoB622
Lsi08G012270Bottle gourd (USVL1VR-Ls)lsilsiB123
Lsi08G012270Bottle gourd (USVL1VR-Ls)lsilsiB151
Lsi08G012270Cucumber (Gy14) v1cgylsiB116
Lsi08G012270Cucumber (Gy14) v1cgylsiB267
Lsi08G012270Cucumber (Gy14) v1cgylsiB441