Lsi08G010150 (gene) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAATGTTATTGTTCAAATTGTCTGACTAGTTAGAATATTCGTACTTTTTTCTTCATGTGCAGATCTCGAATTTAGTTTCTCTCTCTGTTTTCCTGGTTATGTCATGTTTTTTCTATCATTGAGTTGTAGCATGAAGTTCTGTCGTCAGACGCTTCATCCACAGAGCTTTATGCTGTGGCATTTAGATATTTTTCATAATAGTTCCCAATTTCTAGGGGCAACCGCTCTTGTGTTTCATTGGGATATTCAATGAAAGGTGAACATGCACATCTGGTGACCACCCACAGAATTGTGGGCTGCCTTCATGATCATATGGTCAACGCCTATTACACCCAGGAATGAGATAACTACCATACCATTGTCAACTAATCAACCGTGTTTATTTCCTTTCATTGAAATTTGGGAAGATTGGTTTTGCTCTCTAGGTCTATTTGAGTTTGTTTGATTTCCCAGATTTATTTTGAAATGGCCTGTTAATCCTTTTTTTTTTCCCTAAGCACAACAGGACTTCCATGTTGGGACTTGTCTCATGCACGTATCTGTCTCTCTTTGCCTGACTGTTGTATTAGAGCAGCTGATCTGCACATTTTTTTAAGAACTATTTGTTTTCCATCTTTTTTTTTGGTAAAATTTGTTTTCCATCTTAAAGAAAACAATTTGGTTAAGATAAGGAATGCTTGTCTTTCTTTGAGCAGGGATTATTAGTTTTGGAATCCAGTATGCTTTGGAGTCTGTTTTCTTTGGAAGAATTATCGGGTTTTGATGTGACAGGTACAAGCCGTGCTCTTACTTCTTGGAGGTCGTGACGTGCCAACCGGTGTACCTACAATGGAAGTACCATATGATCATAATAACAGGGTAATGCAAATCATGGAAATTTTACTCCATATTATGTGGGTTTGTTCATATATTAGATCTTGCCTACCATCTTCAGGGCATGGTTGACACCCCAAAGCGCTCCAACTTATCACGGAGAATAGCCTCCCTGGTTAGGTTTCGTGAAAAACGGAAAGAGAGATGTTTTGACAAGAAAATTAGGTACACTGTACGGAAAGAGGTTGCACAGAGGTAAGATGACTTAGGCTACTATGACATGGAAGCTAAAGTTTAGTGAGAATATTTTACTTTGCGCATTAGCATTAGCAATAGCAACTGTGGTTGTTTCAATCCTCTTCTTCTCTCATCATTTGGTACAAGATGCTTACGGATACAGTGTACAAAATTCTAGGTCTCAACTGCAGGATGACTTAGCTCATATTATTAAGGCAACCAATTTTGCCTCTAAATACTAATAGTAATAGCTAATACACTATCATTGTTTCTATTATGCTGAATGATCATAAGTTTGAGGCCCTTGGATTTTGTTCTGCTTCTGTTAGAATTCTCTCATTTGAACAAAACTTGATAATTATAAAGTAATTTTTATGTAGCAGACATATGTACTCTAATAAAAAACGAGAGCTATGTTGATAACTTCTTCTTCTTTTTTTTTTTTTTTGAGAAACTAATGTTACTCTTATCTTTTGGGAATGTAAATGCAGATCTCACTTCTCAATGGAAACAGTTTTAATAGCTATGCACGTTTAATTATGATTATTATTTTTCATTGTTGTTTTAGGATGCACCGTAAGAATGGCCAATTTGCATCTTTAAAAGAAAGTTCAGGTGCTTCAAGTTGGGAGTCAGCACATAGTTGCCTCCAGGATGGTACTCGTTCAGAAACTGTGTGAGTTCATGGTTTTAGTCTGTTGTCATTGAGTATTTGAAATTATTTTTCAACAATATATTGTTTGGATATATAAATTTTTTTTATTATTGCTGTTATATACCTCTATCAATATTCTTTCTTCTAAAATATTTTTCAGTTTGCGGAAATGTCAACATTGTGGTGTTAGTGAGAACAATACACCTGCAATGCGTCGTGGGCCTGCTGGACCGAGGACTTTATGTAATGCATGTGGTTTGATGTGGGCGAACAAGGTATTTATGCTAATAATTATCAATATAAATTTTTAATTTAAGATGTCCTCTTACATCTTGAACACCTTTTCCTGTTATTATTATTATTATTATTATGTTAACAGAATAACATATTAAAAACCAGAGAAAACTGTGTGCCAAGGAAGTTACAAATGTCTTTCAATTAGTGCAGTAGAGATATTTCTGTAATTACCAAAAGGCTTAAAGTGTTTACAGCAAGAATCAATGACATTATATAGCTTGGAAGGAATTCAAAAGTAATATTGTTAGGCAAAAGGACAAGGTAAAAATAGTTGGCTCTGTGTTTCTCCATAAAACTTGCCAAGGTGGCACCATTTTGGGGATGGGCACAAGTGTTAATGCTTCCCAACAAGAGTTCACACGAGAACACCTTAACTTTCTTCAGATATGTTCCTTTCCAAATCACCTCATGGAGATGAAAATCAATGATAACATCACTCTTTTGTGAGATCTAGGAAAAGATTTATTGGTAAAAGAGCTGTTTTCACATGCCCATAGTCATTTATCTTCTGGCGAAGCAAGGAGATTTTCAGCTAGCACAGAAGTAGCCGTGCTTGAAATGTGTCATTATTTAGACTCGTCCTTGATTTATTATTATTTTTTTATAAGAAACATTTCATTGACTCCTCCTTGATTTAAGTGGCCAGCTGGAGTCCCCAAATCTGATCTACAGTGACGTTTCACTGTTAAAAGACAGTGTAAAGTCTTGGAAAGGCCACCGGGAAAGAAGGATTAACCTTCCAAAAATGTTCCTGGGATTTGACATTAGATCCATTTTCTATACCGAACATGATCATTTATAAAATTTTGAAGCCTATCATTTTGATTCACTTTGCTCCAACGAGAAACCCCCCTTTCTGGCTAAAGAAGGTATTTTAATAAGAAACATGGAGAGCAGGTATCAGGGTTATGTCCAATAATATTTTATGGATTTAAATTATTAATATATTCTATTTCTTCATGCAGTATTTGTTGGTATTTTTTTTCTGCAACATTTTTTTTAGCATTTTGCCTCTCTTACTGGCTTATTGGTTGTACAGGGCACGTTGAGAGATCTCAGCAAGGGAGGGAGAAATGTATCTCTGGATCATATGGAACCTGTATGTTAAATAAAGCAGTGTTTTTCATTTTAAAATTGATTGTCTCATTGCTTAAGGCTTACTATACTCCGATATTGATCAAACTTTCCTTGTTAGAACGCATTTTCTGGTGGGTACTGGCTTAGGATGCCCTAGAACGCATTTTTTAATTAGAATTCTTAGATGGATAAGGGAAAAAAGAAAGTACAACTAAGATGGGCAATGCCTTTTTTCTAGATAAGAGGCCCATGTATTGAGAGACAGATGGCACACAACTGTGGTGGACTGGATGACCATCCTTACCCAAGAGGATTAGGAAATAACAAAAAGTTCTCAAATCAGCTATATTAG ATGAATATCTCGAATTTAGTTTCTCTCTCTGTTTTCCTGTTCCCAATTTCTAGGGGCAACCGCTCTTGTGTTTCATTGGGATATTCAATGAAAGGTGAACATGCACATCTGGTGACCACCCACAGAATTGTGGGCTGCCTTCATGATCATATGGTACAAGCCGTGCTCTTACTTCTTGGAGGTCGTGACGTGCCAACCGGTGTACCTACAATGGAAGTACCATATGATCATAATAACAGGGGCATGGTTGACACCCCAAAGCGCTCCAACTTATCACGGAGAATAGCCTCCCTGGTTAGGTTTCGTGAAAAACGGAAAGAGAGATGTTTTGACAAGAAAATTAGGTACACTGTACGGAAAGAGGTTGCACAGAGGATGCACCGTAAGAATGGCCAATTTGCATCTTTAAAAGAAAGTTCAGGTGCTTCAAGTTGGGAGTCAGCACATAGTTGCCTCCAGGATGGTACTCGTTCAGAAACTGTTTTGCGGAAATGTCAACATTGTGGTGTTAGTGAGAACAATACACCTGCAATGCGTCGTGGGCCTGCTGGACCGAGGACTTTATGTAATGCATGTGGTTTGATGTGGGCGAACAAGAATAACATATTAAAAACCAGAGAAAACTGTGTGCCAAGGAAGTTACAAATTCTTGGAAAGGCCACCGGGAAAGAAGGATTAACCTTCCAAAAATGTTCCTGGGATTTGACATTAGATCCATTTTCTATACCGAACATGATCATTTATAAAATTTTGAAGCCTATCATTTTGATTCACTTTGCTCCAACGAGAAACCCCCCTTTCTGGCTAAAGAAGCATTTTGCCTCTCTTACTGGCTTATTGGTTGTACAGGGCACGTTGAGAGATCTCAGCAAGGGAGGGAGAAATGTATCTCTGGATCATATGGAACCTATAAGAGGCCCATGTATTGAGAGACAGATGGCACACAACTGTGGTGGACTGGATGACCATCCTTACCCAAGAGGATTAGGAAATAACAAAAAGTTCTCAAATCAGCTATATTAG ATGAATATCTCGAATTTAGTTTCTCTCTCTGTTTTCCTGTTCCCAATTTCTAGGGGCAACCGCTCTTGTGTTTCATTGGGATATTCAATGAAAGGTGAACATGCACATCTGGTGACCACCCACAGAATTGTGGGCTGCCTTCATGATCATATGGTACAAGCCGTGCTCTTACTTCTTGGAGGTCGTGACGTGCCAACCGGTGTACCTACAATGGAAGTACCATATGATCATAATAACAGGGGCATGGTTGACACCCCAAAGCGCTCCAACTTATCACGGAGAATAGCCTCCCTGGTTAGGTTTCGTGAAAAACGGAAAGAGAGATGTTTTGACAAGAAAATTAGGTACACTGTACGGAAAGAGGTTGCACAGAGGATGCACCGTAAGAATGGCCAATTTGCATCTTTAAAAGAAAGTTCAGGTGCTTCAAGTTGGGAGTCAGCACATAGTTGCCTCCAGGATGGTACTCGTTCAGAAACTGTTTTGCGGAAATGTCAACATTGTGGTGTTAGTGAGAACAATACACCTGCAATGCGTCGTGGGCCTGCTGGACCGAGGACTTTATGTAATGCATGTGGTTTGATGTGGGCGAACAAGAATAACATATTAAAAACCAGAGAAAACTGTGTGCCAAGGAAGTTACAAATTCTTGGAAAGGCCACCGGGAAAGAAGGATTAACCTTCCAAAAATGTTCCTGGGATTTGACATTAGATCCATTTTCTATACCGAACATGATCATTTATAAAATTTTGAAGCCTATCATTTTGATTCACTTTGCTCCAACGAGAAACCCCCCTTTCTGGCTAAAGAAGCATTTTGCCTCTCTTACTGGCTTATTGGTTGTACAGGGCACGTTGAGAGATCTCAGCAAGGGAGGGAGAAATGTATCTCTGGATCATATGGAACCTATAAGAGGCCCATGTATTGAGAGACAGATGGCACACAACTGTGGTGGACTGGATGACCATCCTTACCCAAGAGGATTAGGAAATAACAAAAAGTTCTCAAATCAGCTATATTAG MNISNLVSLSVFLFPISRGNRSCVSLGYSMKGEHAHLVTTHRIVGCLHDHMVQAVLLLLGGRDVPTGVPTMEVPYDHNNRGMVDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASLKESSGASSWESAHSCLQDGTRSETVLRKCQHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKNNILKTRENCVPRKLQILGKATGKEGLTFQKCSWDLTLDPFSIPNMIIYKILKPIILIHFAPTRNPPFWLKKHFASLTGLLVVQGTLRDLSKGGRNVSLDHMEPIRGPCIERQMAHNCGGLDDHPYPRGLGNNKKFSNQLY
BLAST of Lsi08G010150 vs. Swiss-Prot
Match: GAT24_ARATH (GATA transcription factor 24 OS=Arabidopsis thaliana GN=GATA24 PE=2 SV=2) HSP 1 Score: 165.6 bits (418), Expect = 9.3e-40 Identity = 93/158 (58.86%), Postives = 108/158 (68.35%), Query Frame = 1
BLAST of Lsi08G010150 vs. Swiss-Prot
Match: GAT18_ORYSI (GATA transcription factor 18 OS=Oryza sativa subsp. indica GN=GATA18 PE=3 SV=1) HSP 1 Score: 159.5 bits (402), Expect = 6.7e-38 Identity = 92/167 (55.09%), Postives = 111/167 (66.47%), Query Frame = 1
BLAST of Lsi08G010150 vs. Swiss-Prot
Match: GAT18_ORYSJ (GATA transcription factor 18 OS=Oryza sativa subsp. japonica GN=GATA18 PE=2 SV=1) HSP 1 Score: 159.5 bits (402), Expect = 6.7e-38 Identity = 92/167 (55.09%), Postives = 111/167 (66.47%), Query Frame = 1
BLAST of Lsi08G010150 vs. Swiss-Prot
Match: GAT28_ARATH (GATA transcription factor 28 OS=Arabidopsis thaliana GN=GATA28 PE=2 SV=1) HSP 1 Score: 159.1 bits (401), Expect = 8.7e-38 Identity = 88/155 (56.77%), Postives = 105/155 (67.74%), Query Frame = 1
BLAST of Lsi08G010150 vs. Swiss-Prot
Match: GAT19_ORYSI (GATA transcription factor 19 OS=Oryza sativa subsp. indica GN=GATA19 PE=3 SV=1) HSP 1 Score: 152.9 bits (385), Expect = 6.2e-36 Identity = 83/151 (54.97%), Postives = 100/151 (66.23%), Query Frame = 1
BLAST of Lsi08G010150 vs. TrEMBL
Match: A0A0A0LLS6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G370420 PE=4 SV=1) HSP 1 Score: 296.6 bits (758), Expect = 3.9e-77 Identity = 146/151 (96.69%), Postives = 147/151 (97.35%), Query Frame = 1
BLAST of Lsi08G010150 vs. TrEMBL
Match: A0A067L2M7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15905 PE=4 SV=1) HSP 1 Score: 270.8 bits (691), Expect = 2.3e-69 Identity = 134/152 (88.16%), Postives = 143/152 (94.08%), Query Frame = 1
BLAST of Lsi08G010150 vs. TrEMBL
Match: A0A067GNE4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g017348mg PE=4 SV=1) HSP 1 Score: 268.1 bits (684), Expect = 1.5e-68 Identity = 132/152 (86.84%), Postives = 143/152 (94.08%), Query Frame = 1
BLAST of Lsi08G010150 vs. TrEMBL
Match: A0A067H0M3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g017348mg PE=4 SV=1) HSP 1 Score: 268.1 bits (684), Expect = 1.5e-68 Identity = 132/152 (86.84%), Postives = 143/152 (94.08%), Query Frame = 1
BLAST of Lsi08G010150 vs. TrEMBL
Match: A0A067GNE9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g017348mg PE=4 SV=1) HSP 1 Score: 268.1 bits (684), Expect = 1.5e-68 Identity = 132/152 (86.84%), Postives = 143/152 (94.08%), Query Frame = 1
BLAST of Lsi08G010150 vs. TAIR10
Match: AT3G21175.1 (AT3G21175.1 ZIM-like 1) HSP 1 Score: 165.6 bits (418), Expect = 5.2e-41 Identity = 93/158 (58.86%), Postives = 108/158 (68.35%), Query Frame = 1
BLAST of Lsi08G010150 vs. TAIR10
Match: AT1G51600.1 (AT1G51600.1 ZIM-LIKE 2) HSP 1 Score: 159.1 bits (401), Expect = 4.9e-39 Identity = 88/155 (56.77%), Postives = 105/155 (67.74%), Query Frame = 1
BLAST of Lsi08G010150 vs. TAIR10
Match: AT4G24470.3 (AT4G24470.3 GATA-type zinc finger protein with TIFY domain) HSP 1 Score: 134.0 bits (336), Expect = 1.7e-31 Identity = 78/162 (48.15%), Postives = 97/162 (59.88%), Query Frame = 1
BLAST of Lsi08G010150 vs. TAIR10
Match: AT4G34680.1 (AT4G34680.1 GATA transcription factor 3) HSP 1 Score: 54.3 bits (129), Expect = 1.7e-07 Identity = 25/41 (60.98%), Postives = 29/41 (70.73%), Query Frame = 1
BLAST of Lsi08G010150 vs. TAIR10
Match: AT3G24050.1 (AT3G24050.1 GATA transcription factor 1) HSP 1 Score: 53.1 bits (126), Expect = 3.8e-07 Identity = 22/34 (64.71%), Postives = 26/34 (76.47%), Query Frame = 1
BLAST of Lsi08G010150 vs. NCBI nr
Match: gi|659088304|ref|XP_008444910.1| (PREDICTED: GATA transcription factor 24-like isoform X2 [Cucumis melo]) HSP 1 Score: 299.3 bits (765), Expect = 8.6e-78 Identity = 147/151 (97.35%), Postives = 148/151 (98.01%), Query Frame = 1
BLAST of Lsi08G010150 vs. NCBI nr
Match: gi|659088300|ref|XP_008444908.1| (PREDICTED: GATA transcription factor 24-like isoform X1 [Cucumis melo]) HSP 1 Score: 299.3 bits (765), Expect = 8.6e-78 Identity = 147/151 (97.35%), Postives = 148/151 (98.01%), Query Frame = 1
BLAST of Lsi08G010150 vs. NCBI nr
Match: gi|778671804|ref|XP_011649688.1| (PREDICTED: GATA transcription factor 24-like isoform X2 [Cucumis sativus]) HSP 1 Score: 296.6 bits (758), Expect = 5.6e-77 Identity = 146/151 (96.69%), Postives = 147/151 (97.35%), Query Frame = 1
BLAST of Lsi08G010150 vs. NCBI nr
Match: gi|778671798|ref|XP_011649686.1| (PREDICTED: GATA transcription factor 24-like isoform X1 [Cucumis sativus]) HSP 1 Score: 296.6 bits (758), Expect = 5.6e-77 Identity = 146/151 (96.69%), Postives = 147/151 (97.35%), Query Frame = 1
BLAST of Lsi08G010150 vs. NCBI nr
Match: gi|802570189|ref|XP_012068046.1| (PREDICTED: GATA transcription factor 24-like isoform X6 [Jatropha curcas]) HSP 1 Score: 270.8 bits (691), Expect = 3.3e-69 Identity = 134/152 (88.16%), Postives = 143/152 (94.08%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |