Lsi08G009640 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi08G009640
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Multifunctional methyltransferase subunit TRM112
Location	chr08 : 18137588 .. 18137956 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGCTACTGACTCATAACATGCTCTCATCTAACATCAAGGGCGTTGTCAATGGCTTCCCTCTCCGAATTGAGGTCGAGAAAGTCGTCGAGAAGCAGGTCGACTTCAATCCAGACTTCCTCAAGAACATGTTCTCCAAGATTGAATGGAAGCCCTTCGTCGATGCCTCTCGGTCTATGGGCTATGCCGAGCTTCCCGAGGAGGCCGAGGCATCAATGCTAGACTCCCATGACTTTCTGCAACGATTCCACCATGCACTTCTGGAGTTGCATCTCGAGGAAGGCACTCTTATTTGCCCGGAGACTGGCCGGCGATTCCCTGTCAATAAAGGTATTCCCAATTTGCTTCTTCACGAAGACGAGGTCTGA

mRNA sequence

ATGAGGCTACTGACTCATAACATGCTCTCATCTAACATCAAGGGCGTTGTCAATGGCTTCCCTCTCCGAATTGAGGTCGAGAAAGTCGTCGAGAAGCAGGTCGACTTCAATCCAGACTTCCTCAAGAACATGTTCTCCAAGATTGAATGGAAGCCCTTCGTCGATGCCTCTCGGTCTATGGGCTATGCCGAGCTTCCCGAGGAGGCCGAGGCATCAATGCTAGACTCCCATGACTTTCTGCAACGATTCCACCATGCACTTCTGGAGTTGCATCTCGAGGAAGGCACTCTTATTTGCCCGGAGACTGGCCGGCGATTCCCTGTCAATAAAGGTATTCCCAATTTGCTTCTTCACGAAGACGAGGTCTGA

Coding sequence (CDS)

ATGAGGCTACTGACTCATAACATGCTCTCATCTAACATCAAGGGCGTTGTCAATGGCTTCCCTCTCCGAATTGAGGTCGAGAAAGTCGTCGAGAAGCAGGTCGACTTCAATCCAGACTTCCTCAAGAACATGTTCTCCAAGATTGAATGGAAGCCCTTCGTCGATGCCTCTCGGTCTATGGGCTATGCCGAGCTTCCCGAGGAGGCCGAGGCATCAATGCTAGACTCCCATGACTTTCTGCAACGATTCCACCATGCACTTCTGGAGTTGCATCTCGAGGAAGGCACTCTTATTTGCCCGGAGACTGGCCGGCGATTCCCTGTCAATAAAGGTATTCCCAATTTGCTTCTTCACGAAGACGAGGTCTGA

Protein sequence

MRLLTHNMLSSNIKGVVNGFPLRIEVEKVVEKQVDFNPDFLKNMFSKIEWKPFVDASRSMGYAELPEEAEASMLDSHDFLQRFHHALLELHLEEGTLICPETGRRFPVNKGIPNLLLHEDEV

Homology

[Close]

BLAST of Lsi08G009640 vs. Swiss-Prot
Match: T112A_ARATH (Multifunctional methyltransferase subunit TRM112-like protein At1g22270 OS=Arabidopsis thaliana GN=At1g22270 PE=2 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 2.6e-48
Identity = 90/124 (72.58%), Postives = 110/124 (88.71%), Query Frame = 1


Query: 1   MRLLTHNMLSSNIKGVVNGFPLRIEVEKVVEKQVDFNPDFLKNMFSKIEWKPFVDASRSM 60
           MRL+THNMLS NIKGV +GFPLRIE   V+EK+VDFNPDF+++MF+KIEWK  V+ +RSM
Sbjct: 1   MRLITHNMLSCNIKGVTSGFPLRIEAGNVIEKEVDFNPDFIRHMFAKIEWKALVEGARSM 60

Query: 61  GYAELPEEA-EASMLDSHD-FLQRFHHALLELHLEEGTLICPETGRRFPVNKGIPNLLLH 120
           GYAELPEE+ +A++L S + FL++ HHALLELHLEEG L+CPETGR+FPVNKGIPN+LLH
Sbjct: 61  GYAELPEESPDAAVLKSDEPFLKKLHHALLELHLEEGALVCPETGRKFPVNKGIPNMLLH 120

Query: 121 EDEV 123
           EDEV
Sbjct: 121 EDEV 124

[Close]

BLAST of Lsi08G009640 vs. Swiss-Prot
Match: T112B_ARATH (Multifunctional methyltransferase subunit TRM112-like protein At1g78190 OS=Arabidopsis thaliana GN=At1g78190 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 4.5e-45
Identity = 87/124 (70.16%), Postives = 105/124 (84.68%), Query Frame = 1


Query: 1   MRLLTHNMLSSNIKGVVNGFPLRIEVEKVVEKQVDFNPDFLKNMFSKIEWKPFVDASRSM 60
           MRL+ HNMLS NIKGVVN FPLRIE EKV  K+VDFNPDFL+ MF+KI+WK  VD +RSM
Sbjct: 1   MRLIVHNMLSCNIKGVVNKFPLRIEAEKVTVKEVDFNPDFLRYMFAKIDWKALVDGARSM 60

Query: 61  GYAELPEEA-EASMLDSHD-FLQRFHHALLELHLEEGTLICPETGRRFPVNKGIPNLLLH 120
            Y ELP+ A + + L+S + FL++FHHALLELHLEEG+L+CPETGR+F V+KGIPN+LLH
Sbjct: 61  EYTELPDNAPDTTTLESDETFLRKFHHALLELHLEEGSLVCPETGRKFSVSKGIPNMLLH 120

Query: 121 EDEV 123
           EDEV
Sbjct: 121 EDEV 124

[Close]

BLAST of Lsi08G009640 vs. Swiss-Prot
Match: TR112_MOUSE (Multifunctional methyltransferase subunit TRM112-like protein OS=Mus musculus GN=Trmt112 PE=1 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 2.2e-28
Identity = 57/122 (46.72%), Postives = 86/122 (70.49%), Query Frame = 1


Query: 1   MRLLTHNMLSSNIKGV-VNGFPLRIEVEKVVEKQVDFNPDFLKNMFSKIEWKPFVDASRS 60
           M+LLTHN+LSS+++GV   GFPLR++  +V    V+FNP+F+  M  K+EW   V A+ +
Sbjct: 1   MKLLTHNLLSSHVRGVGTRGFPLRLQATEVRINPVEFNPEFVARMIPKVEWAALVQAADT 60

Query: 61  MGYAELPEEAEASMLDSHDFLQRFHHALLELHLEEGTLICPETGRRFPVNKGIPNLLLHE 120
           +  AE+P+E          FL++ HH LLE+ + EGTL CPE+GR FP+++GIPN+LL++
Sbjct: 61  LNLAEVPKEPTEGYEHDETFLRKMHHVLLEVDVLEGTLQCPESGRLFPISRGIPNMLLND 120

Query: 121 DE 122
           +E
Sbjct: 121 EE 122

[Close]

BLAST of Lsi08G009640 vs. Swiss-Prot
Match: TR112_BOVIN (Multifunctional methyltransferase subunit TRM112-like protein OS=Bos taurus GN=TRMT112 PE=2 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.9e-27
Identity = 56/122 (45.90%), Postives = 86/122 (70.49%), Query Frame = 1


Query: 1   MRLLTHNMLSSNIKGV-VNGFPLRIEVEKVVEKQVDFNPDFLKNMFSKIEWKPFVDASRS 60
           MRLLTHN+LSS+++GV   GFPLR++  +V    V+FNPDF+  M  K+EW   ++A+  
Sbjct: 1   MRLLTHNLLSSHVRGVGPRGFPLRLQATEVRINPVEFNPDFIVRMIPKVEWAALLEAADH 60

Query: 61  MGYAELPEEAEASMLDSHDFLQRFHHALLELHLEEGTLICPETGRRFPVNKGIPNLLLHE 120
           +   ++P+E       + +FL++ HH LLE+ + EGTL CPE+GR FP+++GIPN+LL +
Sbjct: 61  LHLIQVPKEPIQGYEHNEEFLRKMHHVLLEVEVLEGTLQCPESGRVFPISRGIPNMLLSD 120

Query: 121 DE 122
           +E
Sbjct: 121 EE 122

[Close]

BLAST of Lsi08G009640 vs. Swiss-Prot
Match: TR112_HUMAN (Multifunctional methyltransferase subunit TRM112-like protein OS=Homo sapiens GN=TRMT112 PE=1 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 5.5e-27
Identity = 55/122 (45.08%), Postives = 88/122 (72.13%), Query Frame = 1


Query: 1   MRLLTHNMLSSNIKGVVN-GFPLRIEVEKVVEKQVDFNPDFLKNMFSKIEWKPFVDASRS 60
           M+LLTHN+LSS+++GV + GFPLR++  +V    V+FNP+F+  M  K+EW  F++A+ +
Sbjct: 1   MKLLTHNLLSSHVRGVGSRGFPLRLQATEVRICPVEFNPNFVARMIPKVEWSAFLEAADN 60

Query: 61  MGYAELPEEAEASMLDSHDFLQRFHHALLELHLEEGTLICPETGRRFPVNKGIPNLLLHE 120
           +   ++P+       ++ +FL+  HH LLE+ + EGTL CPE+GR FP+++GIPN+LL E
Sbjct: 61  LRLIQVPKGPVEGYEENEEFLRTMHHLLLEVEVIEGTLQCPESGRMFPISRGIPNMLLSE 120

Query: 121 DE 122
           +E
Sbjct: 121 EE 122

[Close]

BLAST of Lsi08G009640 vs. TrEMBL
Match: A0A0A0LPH5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G368930 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 4.5e-60
Identity = 113/122 (92.62%), Postives = 117/122 (95.90%), Query Frame = 1


Query: 1   MRLLTHNMLSSNIKGVVNGFPLRIEVEKVVEKQVDFNPDFLKNMFSKIEWKPFVDASRSM 60
           MRLLTHNMLSSNIKGV+NGFPLRIEVEKVVEK VDFNPDFLKNMFSKIEWKP VDASR+M
Sbjct: 1   MRLLTHNMLSSNIKGVINGFPLRIEVEKVVEKPVDFNPDFLKNMFSKIEWKPLVDASRTM 60

Query: 61  GYAELPEEAEASMLDSHDFLQRFHHALLELHLEEGTLICPETGRRFPVNKGIPNLLLHED 120
           GYAELPEEA+ASMLDSHDFLQRFHHALLELHLEEG L CPET RRFPVNKGIPN+LLHED
Sbjct: 61  GYAELPEEADASMLDSHDFLQRFHHALLELHLEEGALFCPETNRRFPVNKGIPNMLLHED 120

Query: 121 EV 123
           EV
Sbjct: 121 EV 122

[Close]

BLAST of Lsi08G009640 vs. TrEMBL
Match: A0A067JTJ8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00456 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 1.3e-54
Identity = 102/122 (83.61%), Postives = 115/122 (94.26%), Query Frame = 1


Query: 1   MRLLTHNMLSSNIKGVVNGFPLRIEVEKVVEKQVDFNPDFLKNMFSKIEWKPFVDASRSM 60
           MRLLTHNMLSSNIKGV NGFPLR+EVEKV+EKQVDFNPDFLK+MF KIEWK  VDA+R+M
Sbjct: 1   MRLLTHNMLSSNIKGVSNGFPLRVEVEKVIEKQVDFNPDFLKHMFPKIEWKALVDAARTM 60

Query: 61  GYAELPEEAEASMLDSHDFLQRFHHALLELHLEEGTLICPETGRRFPVNKGIPNLLLHED 120
           G+AELPE+AE+SMLDS +FL++FHHALLELHLEEG L+CPET RRFPVNKGIPN+LLHED
Sbjct: 61  GFAELPEDAESSMLDSDEFLKKFHHALLELHLEEGALVCPETDRRFPVNKGIPNMLLHED 120

Query: 121 EV 123
           EV
Sbjct: 121 EV 122

[Close]

BLAST of Lsi08G009640 vs. TrEMBL
Match: A0A059CEH2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D01128 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 1.7e-54
Identity = 103/122 (84.43%), Postives = 113/122 (92.62%), Query Frame = 1


Query: 1   MRLLTHNMLSSNIKGVVNGFPLRIEVEKVVEKQVDFNPDFLKNMFSKIEWKPFVDASRSM 60
           MRLLTHNMLSSNIKGV+NGFPL I VEKV+EK V+ NPDFLKNMF+KIEWK  VDASRSM
Sbjct: 1   MRLLTHNMLSSNIKGVINGFPLGIVVEKVIEKPVEMNPDFLKNMFAKIEWKALVDASRSM 60

Query: 61  GYAELPEEAEASMLDSHDFLQRFHHALLELHLEEGTLICPETGRRFPVNKGIPNLLLHED 120
           GY ELPE+A++SMLDS DFLQRFHHALLELHLEEG L+CPETGR+FPVNKGIPN+LLHED
Sbjct: 61  GYTELPEQADSSMLDSVDFLQRFHHALLELHLEEGALVCPETGRKFPVNKGIPNMLLHED 120

Query: 121 EV 123
           EV
Sbjct: 121 EV 122

[Close]

BLAST of Lsi08G009640 vs. TrEMBL
Match: A0A068TYB8_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00034555001 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 1.7e-54
Identity = 103/122 (84.43%), Postives = 114/122 (93.44%), Query Frame = 1


Query: 1   MRLLTHNMLSSNIKGVVNGFPLRIEVEKVVEKQVDFNPDFLKNMFSKIEWKPFVDASRSM 60
           MRLLTHNMLSSNIKGV NGFPLRIEVEKVVEK VDFNPDFLKNMF+KIE+K  V+ASR M
Sbjct: 1   MRLLTHNMLSSNIKGVTNGFPLRIEVEKVVEKSVDFNPDFLKNMFAKIEYKALVEASRIM 60

Query: 61  GYAELPEEAEASMLDSHDFLQRFHHALLELHLEEGTLICPETGRRFPVNKGIPNLLLHED 120
           GYAELP+ AE SML+S DFL++FHHAL+ELHLEEGTL+CPETGRRFPVNKG+PN+LLHED
Sbjct: 61  GYAELPDHAEPSMLESDDFLRKFHHALMELHLEEGTLVCPETGRRFPVNKGVPNMLLHED 120

Query: 121 EV 123
           EV
Sbjct: 121 EV 122

[Close]

BLAST of Lsi08G009640 vs. TrEMBL
Match: V4V5H5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10003351mg PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 8.2e-54
Identity = 104/123 (84.55%), Postives = 114/123 (92.68%), Query Frame = 1


Query: 1   MRLLTHNMLSSNIKGVVNGFPLRIEVEKVVEKQVDFNPDFLKNMFSKIEWKPFVDASRSM 60
           MRLLTHNMLSSNIKGV NGFPL IEVEKV+EKQVDFNPDFLKN+F KIEW+  V ASRSM
Sbjct: 1   MRLLTHNMLSSNIKGVANGFPLLIEVEKVIEKQVDFNPDFLKNIFPKIEWQALVQASRSM 60

Query: 61  GYAELPEEA-EASMLDSHDFLQRFHHALLELHLEEGTLICPETGRRFPVNKGIPNLLLHE 120
           GYAELPEE+ E+SMLDS DFL++FHHALLELHLEEG L+CPETGR+FPVNKGIPN+LLHE
Sbjct: 61  GYAELPEESPESSMLDSDDFLRKFHHALLELHLEEGALVCPETGRKFPVNKGIPNMLLHE 120

Query: 121 DEV 123
           DEV
Sbjct: 121 DEV 123

[Close]

BLAST of Lsi08G009640 vs. TAIR10
Match: AT1G22270.1 (AT1G22270.1 Trm112p-like protein)

HSP 1 Score: 192.6 bits (488), Expect = 1.4e-49
Identity = 90/124 (72.58%), Postives = 110/124 (88.71%), Query Frame = 1


Query: 1   MRLLTHNMLSSNIKGVVNGFPLRIEVEKVVEKQVDFNPDFLKNMFSKIEWKPFVDASRSM 60
           MRL+THNMLS NIKGV +GFPLRIE   V+EK+VDFNPDF+++MF+KIEWK  V+ +RSM
Sbjct: 1   MRLITHNMLSCNIKGVTSGFPLRIEAGNVIEKEVDFNPDFIRHMFAKIEWKALVEGARSM 60

Query: 61  GYAELPEEA-EASMLDSHD-FLQRFHHALLELHLEEGTLICPETGRRFPVNKGIPNLLLH 120
           GYAELPEE+ +A++L S + FL++ HHALLELHLEEG L+CPETGR+FPVNKGIPN+LLH
Sbjct: 61  GYAELPEESPDAAVLKSDEPFLKKLHHALLELHLEEGALVCPETGRKFPVNKGIPNMLLH 120

Query: 121 EDEV 123
           EDEV
Sbjct: 121 EDEV 124

[Close]

BLAST of Lsi08G009640 vs. TAIR10
Match: AT1G78190.1 (AT1G78190.1 Trm112p-like protein)

HSP 1 Score: 181.8 bits (460), Expect = 2.5e-46
Identity = 87/124 (70.16%), Postives = 105/124 (84.68%), Query Frame = 1


Query: 1   MRLLTHNMLSSNIKGVVNGFPLRIEVEKVVEKQVDFNPDFLKNMFSKIEWKPFVDASRSM 60
           MRL+ HNMLS NIKGVVN FPLRIE EKV  K+VDFNPDFL+ MF+KI+WK  VD +RSM
Sbjct: 1   MRLIVHNMLSCNIKGVVNKFPLRIEAEKVTVKEVDFNPDFLRYMFAKIDWKALVDGARSM 60

Query: 61  GYAELPEEA-EASMLDSHD-FLQRFHHALLELHLEEGTLICPETGRRFPVNKGIPNLLLH 120
            Y ELP+ A + + L+S + FL++FHHALLELHLEEG+L+CPETGR+F V+KGIPN+LLH
Sbjct: 61  EYTELPDNAPDTTTLESDETFLRKFHHALLELHLEEGSLVCPETGRKFSVSKGIPNMLLH 120

Query: 121 EDEV 123
           EDEV
Sbjct: 121 EDEV 124

[Close]

BLAST of Lsi08G009640 vs. NCBI nr
Match: gi|659088164|ref|XP_008444834.1| (PREDICTED: TRM112-like protein At1g22270 [Cucumis melo])

HSP 1 Score: 240.0 bits (611), Expect = 2.2e-60
Identity = 114/122 (93.44%), Postives = 118/122 (96.72%), Query Frame = 1


Query: 1   MRLLTHNMLSSNIKGVVNGFPLRIEVEKVVEKQVDFNPDFLKNMFSKIEWKPFVDASRSM 60
           MRLLTHNMLSSNIKGV+NGFPLRIEVEKVVEK VDFNPDFLKNMFSKIEWKP VDASR+M
Sbjct: 1   MRLLTHNMLSSNIKGVINGFPLRIEVEKVVEKPVDFNPDFLKNMFSKIEWKPLVDASRTM 60

Query: 61  GYAELPEEAEASMLDSHDFLQRFHHALLELHLEEGTLICPETGRRFPVNKGIPNLLLHED 120
           GYAELPEEA+ASMLDSHDFLQRFHHALLELHLEEG LICPET RRFPVNKGIPN+LLHED
Sbjct: 61  GYAELPEEADASMLDSHDFLQRFHHALLELHLEEGALICPETNRRFPVNKGIPNMLLHED 120

Query: 121 EV 123
           EV
Sbjct: 121 EV 122

[Close]

BLAST of Lsi08G009640 vs. NCBI nr
Match: gi|449469867|ref|XP_004152640.1| (PREDICTED: multifunctional methyltransferase subunit TRM112-like protein At1g22270 [Cucumis sativus])

HSP 1 Score: 238.4 bits (607), Expect = 6.5e-60
Identity = 113/122 (92.62%), Postives = 117/122 (95.90%), Query Frame = 1


Query: 1   MRLLTHNMLSSNIKGVVNGFPLRIEVEKVVEKQVDFNPDFLKNMFSKIEWKPFVDASRSM 60
           MRLLTHNMLSSNIKGV+NGFPLRIEVEKVVEK VDFNPDFLKNMFSKIEWKP VDASR+M
Sbjct: 1   MRLLTHNMLSSNIKGVINGFPLRIEVEKVVEKPVDFNPDFLKNMFSKIEWKPLVDASRTM 60

Query: 61  GYAELPEEAEASMLDSHDFLQRFHHALLELHLEEGTLICPETGRRFPVNKGIPNLLLHED 120
           GYAELPEEA+ASMLDSHDFLQRFHHALLELHLEEG L CPET RRFPVNKGIPN+LLHED
Sbjct: 61  GYAELPEEADASMLDSHDFLQRFHHALLELHLEEGALFCPETNRRFPVNKGIPNMLLHED 120

Query: 121 EV 123
           EV
Sbjct: 121 EV 122

[Close]

BLAST of Lsi08G009640 vs. NCBI nr
Match: gi|802761569|ref|XP_012089822.1| (PREDICTED: multifunctional methyltransferase subunit TRM112-like protein At1g22270 [Jatropha curcas])

HSP 1 Score: 220.3 bits (560), Expect = 1.8e-54
Identity = 102/122 (83.61%), Postives = 115/122 (94.26%), Query Frame = 1


Query: 1   MRLLTHNMLSSNIKGVVNGFPLRIEVEKVVEKQVDFNPDFLKNMFSKIEWKPFVDASRSM 60
           MRLLTHNMLSSNIKGV NGFPLR+EVEKV+EKQVDFNPDFLK+MF KIEWK  VDA+R+M
Sbjct: 1   MRLLTHNMLSSNIKGVSNGFPLRVEVEKVIEKQVDFNPDFLKHMFPKIEWKALVDAARTM 60

Query: 61  GYAELPEEAEASMLDSHDFLQRFHHALLELHLEEGTLICPETGRRFPVNKGIPNLLLHED 120
           G+AELPE+AE+SMLDS +FL++FHHALLELHLEEG L+CPET RRFPVNKGIPN+LLHED
Sbjct: 61  GFAELPEDAESSMLDSDEFLKKFHHALLELHLEEGALVCPETDRRFPVNKGIPNMLLHED 120

Query: 121 EV 123
           EV
Sbjct: 121 EV 122

[Close]

BLAST of Lsi08G009640 vs. NCBI nr
Match: gi|1009138404|ref|XP_015886569.1| (PREDICTED: multifunctional methyltransferase subunit TRM112-like protein At1g22270 [Ziziphus jujuba])

HSP 1 Score: 219.9 bits (559), Expect = 2.4e-54
Identity = 102/122 (83.61%), Postives = 113/122 (92.62%), Query Frame = 1


Query: 1   MRLLTHNMLSSNIKGVVNGFPLRIEVEKVVEKQVDFNPDFLKNMFSKIEWKPFVDASRSM 60
           MRLLTHNML+SNIKGV NGFPLRIEVEK +EKQVDFNP+FLKNMF+KI WK  VDASR M
Sbjct: 1   MRLLTHNMLASNIKGVTNGFPLRIEVEKAIEKQVDFNPEFLKNMFTKIHWKALVDASRIM 60

Query: 61  GYAELPEEAEASMLDSHDFLQRFHHALLELHLEEGTLICPETGRRFPVNKGIPNLLLHED 120
           G+AELPEEA++SML+S DFL+ FHHALLELHLEEG L+CPETGRRFPVNKGIPN+LLHED
Sbjct: 61  GFAELPEEADSSMLESDDFLRNFHHALLELHLEEGALVCPETGRRFPVNKGIPNMLLHED 120

Query: 121 EV 123
           EV
Sbjct: 121 EV 122

[Close]

BLAST of Lsi08G009640 vs. NCBI nr
Match: gi|661895252|emb|CDP01057.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 219.9 bits (559), Expect = 2.4e-54
Identity = 103/122 (84.43%), Postives = 114/122 (93.44%), Query Frame = 1


Query: 1   MRLLTHNMLSSNIKGVVNGFPLRIEVEKVVEKQVDFNPDFLKNMFSKIEWKPFVDASRSM 60
           MRLLTHNMLSSNIKGV NGFPLRIEVEKVVEK VDFNPDFLKNMF+KIE+K  V+ASR M
Sbjct: 1   MRLLTHNMLSSNIKGVTNGFPLRIEVEKVVEKSVDFNPDFLKNMFAKIEYKALVEASRIM 60

Query: 61  GYAELPEEAEASMLDSHDFLQRFHHALLELHLEEGTLICPETGRRFPVNKGIPNLLLHED 120
           GYAELP+ AE SML+S DFL++FHHAL+ELHLEEGTL+CPETGRRFPVNKG+PN+LLHED
Sbjct: 61  GYAELPDHAEPSMLESDDFLRKFHHALMELHLEEGTLVCPETGRRFPVNKGVPNMLLHED 120

Query: 121 EV 123
           EV
Sbjct: 121 EV 122

The following BLAST results are available for this feature:

BLAST of Lsi08G009640 vs. Swiss-Prot


Match Name	E-value	Identity	Description
T112A_ARATH	2.6e-48	72.58	Multifunctional methyltransferase subunit TRM112-like protein At1g22270 OS=Arabi...	[more]
T112B_ARATH	4.5e-45	70.16	Multifunctional methyltransferase subunit TRM112-like protein At1g78190 OS=Arabi...	[more]
TR112_MOUSE	2.2e-28	46.72	Multifunctional methyltransferase subunit TRM112-like protein OS=Mus musculus GN...	[more]
TR112_BOVIN	1.9e-27	45.90	Multifunctional methyltransferase subunit TRM112-like protein OS=Bos taurus GN=T...	[more]
TR112_HUMAN	5.5e-27	45.08	Multifunctional methyltransferase subunit TRM112-like protein OS=Homo sapiens GN...	[more]

BLAST of Lsi08G009640 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LPH5_CUCSA	4.5e-60	92.62	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G368930 PE=4 SV=1	[more]
A0A067JTJ8_JATCU	1.3e-54	83.61	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00456 PE=4 SV=1	[more]
A0A059CEH2_EUCGR	1.7e-54	84.43	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D01128 PE=4 SV=1	[more]
A0A068TYB8_COFCA	1.7e-54	84.43	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00034555001 PE=4 SV=1	[more]
V4V5H5_9ROSI	8.2e-54	84.55	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10003351mg PE=4 SV=1	[more]

BLAST of Lsi08G009640 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G22270.1	1.4e-49	72.58	Trm112p-like protein	[more]
AT1G78190.1	2.5e-46	70.16	Trm112p-like protein	[more]

BLAST of Lsi08G009640 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659088164\|ref\|XP_008444834.1\|	2.2e-60	93.44	PREDICTED: TRM112-like protein At1g22270 [Cucumis melo]	[more]
gi\|449469867\|ref\|XP_004152640.1\|	6.5e-60	92.62	PREDICTED: multifunctional methyltransferase subunit TRM112-like protein At1g222...	[more]
gi\|802761569\|ref\|XP_012089822.1\|	1.8e-54	83.61	PREDICTED: multifunctional methyltransferase subunit TRM112-like protein At1g222...	[more]
gi\|1009138404\|ref\|XP_015886569.1\|	2.4e-54	83.61	PREDICTED: multifunctional methyltransferase subunit TRM112-like protein At1g222...	[more]
gi\|661895252\|emb\|CDP01057.1\|	2.4e-54	84.43	unnamed protein product [Coffea canephora]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005651	Trm112-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005977	glycogen metabolic process
biological_process	GO:0018364	peptidyl-glutamine methylation
biological_process	GO:0070476	rRNA (guanine-N7)-methylation
biological_process	GO:0030488	tRNA methylation
biological_process	GO:0008150	biological_process
biological_process	GO:0032259	methylation
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0019156	isoamylase activity
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0046982	protein heterodimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi08G009640.1	Lsi08G009640.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005651	Uncharacterised protein family UPF0434/Trm112	PFAM	PF03966	Trm112p	coord: 3..111 score: 5.4
None	No IPR available	GENE3D	G3DSA:2.20.25.10		coord: 87..119 score: 6.
None	No IPR available	unknown	SSF158997	Trm112p-like	coord: 87..121 score: 1.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi08G009640	Csa2G368930	Cucumber (Chinese Long) v2	culsiB140
Lsi08G009640	CSPI02G21010	Wild cucumber (PI 183967)	cpilsiB139
Lsi08G009640	Cucsa.160030	Cucumber (Gy14) v1	cgylsiB267
Lsi08G009640	Cla022095	Watermelon (97103) v1	lsiwmB465
Lsi08G009640	MELO3C011026	Melon (DHL92) v3.5.1	lsimeB474
Lsi08G009640	ClCG08G011100	Watermelon (Charleston Gray)	lsiwcgB438
Lsi08G009640	MELO3C011026.2	Melon (DHL92) v3.6.1	lsimedB493
Lsi08G009640	Cla97C08G154040	Watermelon (97103) v2	lsiwmbB444
Lsi08G009640	Bhi04G000626	Wax gourd	lsiwgoB595
Lsi08G009640	CsGy2G020740	Cucumber (Gy14) v2	cgyblsiB126
Lsi08G009640	CsaV3_2G029680	Cucumber (Chinese Long) v3	cuclsiB152

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi08G009640	Bottle gourd (USVL1VR-Ls)	lsilsiB084
Lsi08G009640	Cucumber (Gy14) v1	cgylsiB131
Lsi08G009640	Cucurbita maxima (Rimu)	cmalsiB185
Lsi08G009640	Cucurbita maxima (Rimu)	cmalsiB620
Lsi08G009640	Cucurbita maxima (Rimu)	cmalsiB737
Lsi08G009640	Cucurbita maxima (Rimu)	cmalsiB807
Lsi08G009640	Cucurbita moschata (Rifu)	cmolsiB176
Lsi08G009640	Cucurbita moschata (Rifu)	cmolsiB607
Lsi08G009640	Cucurbita moschata (Rifu)	cmolsiB728
Lsi08G009640	Cucurbita moschata (Rifu)	cmolsiB793
Lsi08G009640	Cucurbita pepo (Zucchini)	cpelsiB068
Lsi08G009640	Cucurbita pepo (Zucchini)	cpelsiB098
Lsi08G009640	Cucurbita pepo (Zucchini)	cpelsiB411
Lsi08G009640	Cucurbita pepo (Zucchini)	cpelsiB686
Lsi08G009640	Wild cucumber (PI 183967)	cpilsiB492
Lsi08G009640	Cucumber (Chinese Long) v2	culsiB483
Lsi08G009640	Melon (DHL92) v3.5.1	lsimeB493
Lsi08G009640	Watermelon (Charleston Gray)	lsiwcgB426
Lsi08G009640	Watermelon (97103) v1	lsiwmB489
Lsi08G009640	Cucumber (Gy14) v2	cgyblsiB449
Lsi08G009640	Melon (DHL92) v3.6.1	lsimedB511
Lsi08G009640	Silver-seed gourd	carlsiB056
Lsi08G009640	Silver-seed gourd	carlsiB370
Lsi08G009640	Silver-seed gourd	carlsiB593
Lsi08G009640	Silver-seed gourd	carlsiB695
Lsi08G009640	Cucumber (Chinese Long) v3	cuclsiB514
Lsi08G009640	Watermelon (97103) v2	lsiwmbB424
Lsi08G009640	Wax gourd	lsiwgoB615