Lsi08G006730 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi08G006730
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	DNA-directed RNA polymerase II, subunit n, putative
Location	chr08 : 15063395 .. 15064208 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATCCTTGCGTCGGGCATCGGAGGAGGGTTGAGCAGAAACCTCTCAAAACCCTAGAAGTTGATCGGAGGCAGCGTCGGAGGGCGGAGCAGAAAGCGAAGATGATCATTCCAGTGCGTTGCTTCACTTGCGGAAAGGTTAGGGATGGAGAACTATGTTGAATTTTGAGTTTAAAATTGCGATTTTCTGTTCTCTATGTCGTGTGTGCCACTGTTTTTCGATTGCTGCATAAGAGGATGACATAGTTTTCAATTAGTCTCAATCAACTCTTAATTGACTTGGTTTTTTTTATATTTTTTTTTCAGGTGATTGGAAACAAATGGGATCATTACCTTGATCTTCTACAGGCAGACTATTCTGAAGGGTAATGATGTAACACTCTCGTTCTTCTTCTTCTTCTTCTGTTTTCTTGATATCATTATATGTTTTGGTTTTTTAAGTTGCCTCTTAATTCCTTCTTGATTCTTGATGATTGATTGTTAGTAGACGAAAGTGTACTGTTTTACATTGCTATGGAGATGCTAATGTGTTTTTTTTCCTGTATTAGGGATGCACTTGATGCTCTGGGCTTGGTTCGCTACTGCTGCAGGCGAATGCTCATGACTCATGTTGATCTTATTGAGAAGCTTCTCAATTACAACAGTAATCCCCTTCTCTCTCTCTCTCTCTCTCTCTCTCTACATTTATGCATGAGTTGTTTGACTGTTGATGTAGAATTTCGCTGCTCCTTTACGCCTTAATTGCTTTCTGTTTCAGCTCTGGATAAGTCTGATACCAGTTAGCCAAGGGACGAGTTTTCTGCTTTTTCACGTGCAG

mRNA sequence

AATCCTTGCGTCGGGCATCGGAGGAGGGTTGAGCAGAAACCTCTCAAAACCCTAGAAGTTGATCGGAGGCAGCGTCGGAGGGCGGAGCAGAAAGCGAAGATGATCATTCCAGTGCGTTGCTTCACTTGCGGAAAGGTGATTGGAAACAAATGGGATCATTACCTTGATCTTCTACAGGCAGACTATTCTGAAGGGGATGCACTTGATGCTCTGGGCTTGGTTCGCTACTGCTGCAGGCGAATGCTCATGACTCATGTTGATCTTATTGAGAAGCTTCTCAATTACAACAGTAATCCCCTTCTCTCTCTCTCTCTCTCTCTCTCTCTACATTTATGCATGAGTTGTTTGACTGTTGATGTAGAATTTCGCTGCTCCTTTACGCCTTAATTGCTTTCTGTTTCAGCTCTGGATAAGTCTGATACCAGTTAGCCAAGGGACGAGTTTTCTGCTTTTTCACGTGCAG

Coding sequence (CDS)

AATCCTTGCGTCGGGCATCGGAGGAGGGTTGAGCAGAAACCTCTCAAAACCCTAGAAGTTGATCGGAGGCAGCGTCGGAGGGCGGAGCAGAAAGCGAAGATGATCATTCCAGTGCGTTGCTTCACTTGCGGAAAGGTGATTGGAAACAAATGGGATCATTACCTTGATCTTCTACAGGCAGACTATTCTGAAGGGGATGCACTTGATGCTCTGGGCTTGGTTCGCTACTGCTGCAGGCGAATGCTCATGACTCATGTTGATCTTATTGAGAAGCTTCTCAATTACAACAGTAATCCCCTTCTCTCTCTCTCTCTCTCTCTCTCTCTACATTTATGCATGAGTTGTTTGACTGTTGATGTAGAATTTCGCTGCTCCTTTACGCCTTAA

Protein sequence

NPCVGHRRRVEQKPLKTLEVDRRQRRRAEQKAKMIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNSNPLLSLSLSLSLHLCMSCLTVDVEFRCSFTP

Homology

[Close]

BLAST of Lsi08G006730 vs. Swiss-Prot
Match: RPBAL_ARATH (DNA-directed RNA polymerase subunit 10-like protein OS=Arabidopsis thaliana GN=NRPB10L PE=1 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.9e-30
Identity = 59/64 (92.19%), Postives = 63/64 (98.44%), Query Frame = 1


Query: 34 MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 93
          MI+PVRCFTCGKVIGNKWD YL+LLQADY+EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIVPVRCFTCGKVIGNKWDTYLELLQADYAEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 94 NYNS 98
          NYN+
Sbjct: 61 NYNT 64

[Close]

BLAST of Lsi08G006730 vs. Swiss-Prot
Match: NRPBA_ARATH (DNA-directed RNA polymerases II, IV and V subunit 10 OS=Arabidopsis thaliana GN=NRPB10 PE=1 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 9.6e-30
Identity = 59/64 (92.19%), Postives = 61/64 (95.31%), Query Frame = 1


Query: 34 MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 93
          MIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL LVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDQYLDLLQLDYTEGDALDALQLVRYCCRRMLMTHVDLIEKLL 60

Query: 94 NYNS 98
          NYN+
Sbjct: 61 NYNT 64

[Close]

BLAST of Lsi08G006730 vs. Swiss-Prot
Match: RPAB5_BRANA (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Brassica napus PE=3 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 9.6e-30
Identity = 59/64 (92.19%), Postives = 61/64 (95.31%), Query Frame = 1


Query: 34 MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 93
          MIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL LVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDAYLDLLQLDYTEGDALDALNLVRYCCRRMLMTHVDLIEKLL 60

Query: 94 NYNS 98
          NYN+
Sbjct: 61 NYNT 64

[Close]

BLAST of Lsi08G006730 vs. Swiss-Prot
Match: RPAB5_DICDI (DNA-directed RNA polymerases I, II, and III subunit rpabc5 OS=Dictyostelium discoideum GN=polr2l PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 7.6e-27
Identity = 55/62 (88.71%), Postives = 57/62 (91.94%), Query Frame = 1


Query: 34 MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 93
          MIIPVRCFTCGKVIGNKWD YL LLQ DY+EGDALDAL L RYCCRRML+THVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDAYLSLLQIDYTEGDALDALCLKRYCCRRMLLTHVDLIEKLL 60

Query: 94 NY 96
          NY
Sbjct: 61 NY 62

[Close]

BLAST of Lsi08G006730 vs. Swiss-Prot
Match: RPAB5_BOVIN (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Bos taurus GN=POLR2L PE=1 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.3e-26
Identity = 52/62 (83.87%), Postives = 58/62 (93.55%), Query Frame = 1


Query: 34 MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 93
          MIIPVRCFTCGK++GNKW+ YL LLQA+Y+EGDALDALGL RYCCRRML+ HVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKIVGNKWEAYLGLLQAEYTEGDALDALGLKRYCCRRMLLAHVDLIEKLL 60

Query: 94 NY 96
          NY
Sbjct: 61 NY 62

[Close]

BLAST of Lsi08G006730 vs. TrEMBL
Match: W9RW11_9ROSA (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Morus notabilis GN=L484_007015 PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.2e-31
Identity = 71/94 (75.53%), Postives = 76/94 (80.85%), Query Frame = 1


Query: 14  PLKTLEVDRRQRRRAEQKAKMIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGL 73
           P+   +  R +R + E   KMIIPVRCFTCGKVIGNKWD YLDLLQADYSEGDALDALGL
Sbjct: 98  PVSGKQRRRSRREKDENSKKMIIPVRCFTCGKVIGNKWDTYLDLLQADYSEGDALDALGL 157

Query: 74  VRYCCRRMLMTHVDLIEKLLNYNSNPLLSLSLSL 108
           VRYCCRRMLMTHVDLIEKLLNYNS   L  S+ L
Sbjct: 158 VRYCCRRMLMTHVDLIEKLLNYNSESSLCTSVLL 191

[Close]

BLAST of Lsi08G006730 vs. TrEMBL
Match: M8D4I9_AEGTA (DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Aegilops tauschii GN=F775_26628 PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 7.9e-31
Identity = 65/70 (92.86%), Postives = 67/70 (95.71%), Query Frame = 1


Query: 32  AKMIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEK 91
           +KMIIPVRCFTCGKVIGNKWDHYLDLLQADY+EGDALDALGLVRYCCRRMLMTHVDLIEK
Sbjct: 138 SKMIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEK 197

Query: 92  LLNYNSNPLL 102
           LLNYN   LL
Sbjct: 198 LLNYNIAALL 207

[Close]

BLAST of Lsi08G006730 vs. TrEMBL
Match: W5F4P5_WHEAT (Uncharacterized protein OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 7.9e-31
Identity = 63/66 (95.45%), Postives = 66/66 (100.00%), Query Frame = 1


Query: 32 AKMIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEK 91
          +KMIIPVRCFTCGKVIGNKWDHYLDLLQADY+EGDALDALGLVRYCCRRMLMTHVDLIEK
Sbjct: 25 SKMIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEK 84

Query: 92 LLNYNS 98
          LLNYN+
Sbjct: 85 LLNYNT 90

[Close]

BLAST of Lsi08G006730 vs. TrEMBL
Match: T1MEG7_TRIUA (Uncharacterized protein OS=Triticum urartu PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 7.9e-31
Identity = 63/66 (95.45%), Postives = 66/66 (100.00%), Query Frame = 1


Query: 32 AKMIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEK 91
          +KMIIPVRCFTCGKVIGNKWDHYLDLLQADY+EGDALDALGLVRYCCRRMLMTHVDLIEK
Sbjct: 1  SKMIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEK 60

Query: 92 LLNYNS 98
          LLNYN+
Sbjct: 61 LLNYNT 66

[Close]

BLAST of Lsi08G006730 vs. TrEMBL
Match: A0A077RWJ0_WHEAT (Uncharacterized protein OS=Triticum aestivum GN=TRAES_3BF057600100CFD_c1 PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.0e-30
Identity = 64/68 (94.12%), Postives = 66/68 (97.06%), Query Frame = 1


Query: 34  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 93
           MIIPVRCFTCGKVIGNKWDHYLDLLQADY+EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1   MIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 94  NYNSNPLL 102
           NYNS  +L
Sbjct: 61  NYNSKLML 68

[Close]

BLAST of Lsi08G006730 vs. TAIR10
Match: AT1G61700.1 (AT1G61700.1 RNA polymerases N / 8 kDa subunit)

HSP 1 Score: 133.3 bits (334), Expect = 1.1e-31
Identity = 59/64 (92.19%), Postives = 63/64 (98.44%), Query Frame = 1


Query: 34 MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 93
          MI+PVRCFTCGKVIGNKWD YL+LLQADY+EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIVPVRCFTCGKVIGNKWDTYLELLQADYAEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 94 NYNS 98
          NYN+
Sbjct: 61 NYNT 64

[Close]

BLAST of Lsi08G006730 vs. TAIR10
Match: AT1G11475.1 (AT1G11475.1 RNA polymerases N / 8 kDa subunit)

HSP 1 Score: 131.0 bits (328), Expect = 5.4e-31
Identity = 59/64 (92.19%), Postives = 61/64 (95.31%), Query Frame = 1


Query: 34 MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 93
          MIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL LVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDQYLDLLQLDYTEGDALDALQLVRYCCRRMLMTHVDLIEKLL 60

Query: 94 NYNS 98
          NYN+
Sbjct: 61 NYNT 64

[Close]

BLAST of Lsi08G006730 vs. NCBI nr
Match: gi|703128753|ref|XP_010104175.1| (DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Morus notabilis])

HSP 1 Score: 144.1 bits (362), Expect = 1.7e-31
Identity = 71/94 (75.53%), Postives = 76/94 (80.85%), Query Frame = 1


Query: 14  PLKTLEVDRRQRRRAEQKAKMIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGL 73
           P+   +  R +R + E   KMIIPVRCFTCGKVIGNKWD YLDLLQADYSEGDALDALGL
Sbjct: 98  PVSGKQRRRSRREKDENSKKMIIPVRCFTCGKVIGNKWDTYLDLLQADYSEGDALDALGL 157

Query: 74  VRYCCRRMLMTHVDLIEKLLNYNSNPLLSLSLSL 108
           VRYCCRRMLMTHVDLIEKLLNYNS   L  S+ L
Sbjct: 158 VRYCCRRMLMTHVDLIEKLLNYNSESSLCTSVLL 191

[Close]

BLAST of Lsi08G006730 vs. NCBI nr
Match: gi|475620758|gb|EMT31231.1| (DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Aegilops tauschii])

HSP 1 Score: 141.4 bits (355), Expect = 1.1e-30
Identity = 65/70 (92.86%), Postives = 67/70 (95.71%), Query Frame = 1


Query: 32  AKMIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEK 91
           +KMIIPVRCFTCGKVIGNKWDHYLDLLQADY+EGDALDALGLVRYCCRRMLMTHVDLIEK
Sbjct: 138 SKMIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEK 197

Query: 92  LLNYNSNPLL 102
           LLNYN   LL
Sbjct: 198 LLNYNIAALL 207

[Close]

BLAST of Lsi08G006730 vs. NCBI nr
Match: gi|669030272|emb|CDM84745.1| (unnamed protein product [Triticum aestivum])

HSP 1 Score: 141.0 bits (354), Expect = 1.5e-30
Identity = 64/68 (94.12%), Postives = 66/68 (97.06%), Query Frame = 1


Query: 34  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 93
           MIIPVRCFTCGKVIGNKWDHYLDLLQADY+EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1   MIIPVRCFTCGKVIGNKWDHYLDLLQADYTEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 94  NYNSNPLL 102
           NYNS  +L
Sbjct: 61  NYNSKLML 68

[Close]

BLAST of Lsi08G006730 vs. NCBI nr
Match: gi|449441830|ref|XP_004138685.1| (PREDICTED: DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Cucumis sativus])

HSP 1 Score: 140.2 bits (352), Expect = 2.5e-30
Identity = 63/64 (98.44%), Postives = 64/64 (100.00%), Query Frame = 1


Query: 34 MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 93
          MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 94 NYNS 98
          NYN+
Sbjct: 61 NYNT 64

[Close]

BLAST of Lsi08G006730 vs. NCBI nr
Match: gi|947104563|gb|KRH52946.1| (hypothetical protein GLYMA_06G096400 [Glycine max])

HSP 1 Score: 139.8 bits (351), Expect = 3.3e-30
Identity = 64/65 (98.46%), Postives = 64/65 (98.46%), Query Frame = 1


Query: 34 MIIPVRCFTCGKVIGNKWDHYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 93
          MIIPVRCFTCGKVIGNKWD YLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDTYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 94 NYNSN 99
          NYNSN
Sbjct: 61 NYNSN 65

The following BLAST results are available for this feature:

BLAST of Lsi08G006730 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RPBAL_ARATH	1.9e-30	92.19	DNA-directed RNA polymerase subunit 10-like protein OS=Arabidopsis thaliana GN=N...	[more]
NRPBA_ARATH	9.6e-30	92.19	DNA-directed RNA polymerases II, IV and V subunit 10 OS=Arabidopsis thaliana GN=...	[more]
RPAB5_BRANA	9.6e-30	92.19	DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Brassica napus PE=...	[more]
RPAB5_DICDI	7.6e-27	88.71	DNA-directed RNA polymerases I, II, and III subunit rpabc5 OS=Dictyostelium disc...	[more]
RPAB5_BOVIN	1.3e-26	83.87	DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Bos taurus GN=POLR...	[more]

BLAST of Lsi08G006730 vs. TrEMBL


Match Name	E-value	Identity	Description
W9RW11_9ROSA	1.2e-31	75.53	DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Morus notabilis GN...	[more]
M8D4I9_AEGTA	7.9e-31	92.86	DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Aegilops tauschii ...	[more]
W5F4P5_WHEAT	7.9e-31	95.45	Uncharacterized protein OS=Triticum aestivum PE=3 SV=1	[more]
T1MEG7_TRIUA	7.9e-31	95.45	Uncharacterized protein OS=Triticum urartu PE=3 SV=1	[more]
A0A077RWJ0_WHEAT	1.0e-30	94.12	Uncharacterized protein OS=Triticum aestivum GN=TRAES_3BF057600100CFD_c1 PE=3 SV...	[more]

BLAST of Lsi08G006730 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G61700.1	1.1e-31	92.19	RNA polymerases N / 8 kDa subunit	[more]
AT1G11475.1	5.4e-31	92.19	RNA polymerases N / 8 kDa subunit	[more]

BLAST of Lsi08G006730 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|703128753\|ref\|XP_010104175.1\|	1.7e-31	75.53	DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Morus notabilis]	[more]
gi\|475620758\|gb\|EMT31231.1\|	1.1e-30	92.86	DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Aegilops tauschii]	[more]
gi\|669030272\|emb\|CDM84745.1\|	1.5e-30	94.12	unnamed protein product [Triticum aestivum]	[more]
gi\|449441830\|ref\|XP_004138685.1\|	2.5e-30	98.44	PREDICTED: DNA-directed RNA polymerases I, II, and III subunit RPABC5 [Cucumis s...	[more]
gi\|947104563\|gb\|KRH52946.1\|	3.3e-30	98.46	hypothetical protein GLYMA_06G096400 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding
GO:0003899	DNA-directed RNA polymerase activity
GO:0003677	DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006351	transcription, DNA-templated

Vocabulary: **INTERPRO**
Term	Definition
IPR023580	RNA_pol_su_RPB10
IPR020789	RNA_pol_suN_Zn-BS
IPR009057	Homeobox-like_sf
IPR000268	RNAP_N/Rpb10

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006383	transcription from RNA polymerase III promoter
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0006360	transcription from RNA polymerase I promoter
biological_process	GO:0006366	transcription from RNA polymerase II promoter
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
cellular_component	GO:0005736	DNA-directed RNA polymerase I complex
cellular_component	GO:0005665	DNA-directed RNA polymerase II, core complex
cellular_component	GO:0005666	DNA-directed RNA polymerase III complex
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0001054	RNA polymerase I activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0001056	RNA polymerase III activity
molecular_function	GO:0001055	RNA polymerase II activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed RNA polymerase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi08G006730.1	Lsi08G006730.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000268	DNA-directed RNA polymerase, subunit N/Rpb10	PRODOM	PD006539		coord: 43..82 score: 4.0
IPR000268	DNA-directed RNA polymerase, subunit N/Rpb10	HAMAP	MF_00250	RNApol_arch_N	coord: 34..96 score: 19
IPR000268	DNA-directed RNA polymerase, subunit N/Rpb10	PFAM	PF01194	RNA_pol_N	coord: 34..92 score: 5.2
IPR009057	Homeodomain-like	GENE3D	G3DSA:1.10.10.60		coord: 34..97 score: 1.1
IPR020789	RNA polymerases, subunit N, zinc binding site	PROSITE	PS01112	RNA_POL_N_8KD	coord: 35..44 scor
IPR023580	RNA polymerase subunit RPB10	unknown	SSF46924	RNA polymerase subunit RPB10	coord: 34..96 score: 1.7
None	No IPR available	PANTHER	PTHR23431	FAMILY NOT NAMED	coord: 35..96 score: 3.9
None	No IPR available	PANTHER	PTHR23431:SF2	DNA-DIRECTED RNA POLYMERASES II, IV AND V SUBUNIT 10	coord: 35..96 score: 3.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi08G006730	Csa2G384980	Cucumber (Chinese Long) v2	culsiB145
Lsi08G006730	CSPI02G24220	Wild cucumber (PI 183967)	cpilsiB144
Lsi08G006730	Cucsa.163130	Cucumber (Gy14) v1	cgylsiB269
Lsi08G006730	Cla013724	Watermelon (97103) v1	lsiwmB475
Lsi08G006730	ClCG08G007960	Watermelon (Charleston Gray)	lsiwcgB443
Lsi08G006730	MELO3C030275.2	Melon (DHL92) v3.6.1	lsimedB490
Lsi08G006730	Cla97C08G150720	Watermelon (97103) v2	lsiwmbB448
Lsi08G006730	Bhi04G001040	Wax gourd	lsiwgoB594
Lsi08G006730	CsGy2G024020	Cucumber (Gy14) v2	cgyblsiB132
Lsi08G006730	CsaV3_2G032780	Cucumber (Chinese Long) v3	cuclsiB157

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi08G006730	Wax gourd	lsiwgoB618
Lsi08G006730	Bottle gourd (USVL1VR-Ls)	lsilsiB134
Lsi08G006730	Bottle gourd (USVL1VR-Ls)	lsilsiB152
Lsi08G006730	Cucumber (Gy14) v1	cgylsiB498
Lsi08G006730	Cucurbita maxima (Rimu)	cmalsiB293
Lsi08G006730	Cucurbita maxima (Rimu)	cmalsiB294
Lsi08G006730	Cucurbita maxima (Rimu)	cmalsiB703
Lsi08G006730	Cucurbita maxima (Rimu)	cmalsiB706
Lsi08G006730	Cucurbita moschata (Rifu)	cmolsiB281
Lsi08G006730	Cucurbita moschata (Rifu)	cmolsiB282
Lsi08G006730	Cucurbita moschata (Rifu)	cmolsiB697
Lsi08G006730	Cucurbita moschata (Rifu)	cmolsiB700
Lsi08G006730	Cucurbita pepo (Zucchini)	cpelsiB161
Lsi08G006730	Cucurbita pepo (Zucchini)	cpelsiB382
Lsi08G006730	Cucurbita pepo (Zucchini)	cpelsiB384
Lsi08G006730	Wild cucumber (PI 183967)	cpilsiB393
Lsi08G006730	Cucumber (Chinese Long) v2	culsiB389
Lsi08G006730	Melon (DHL92) v3.5.1	lsimeB463
Lsi08G006730	Melon (DHL92) v3.5.1	lsimeB470
Lsi08G006730	Watermelon (Charleston Gray)	lsiwcgB435
Lsi08G006730	Watermelon (97103) v1	lsiwmB464
Lsi08G006730	Watermelon (97103) v1	lsiwmB485
Lsi08G006730	Cucumber (Gy14) v2	cgyblsiB354
Lsi08G006730	Melon (DHL92) v3.6.1	lsimedB482
Lsi08G006730	Silver-seed gourd	carlsiB243
Lsi08G006730	Silver-seed gourd	carlsiB628
Lsi08G006730	Silver-seed gourd	carlsiB769
Lsi08G006730	Cucumber (Chinese Long) v3	cuclsiB412
Lsi08G006730	Watermelon (97103) v2	lsiwmbB426
Lsi08G006730	Watermelon (97103) v2	lsiwmbB439