Lsi08G006400 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi08G006400
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionCationic amino acid transporter 6
Locationchr08 : 14724274 .. 14724666 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGCCCATTCCTCTTCCTTTTCAAGCTTTTCCGCCTACCTTCGAGCTCTCTCTCTAACCCCTTCTCGTCTTTCTCGCCGGGCTTTCTCTGTTTCCACCTCTTTCGATGAAATGACCACTACTCGATCCACTTCCGGCGTCGACATGCAGAGGACTCTCCGCTGGTTCGACCTCGTCGGTTTTGGCCTCGGTGGGATGATCGGTGCGGGGGTTTTCGTCACCACCGGTCCGGCTACACAGCAAGCTGGACCCGCCATTGTTCTCTCTTACGCCATTGCTGGCCTCTGTGCGCTTTTATCGGCGTTCTGCTACACTGAGTTCGCCGTCGATATGCCTGTTGCTGGTGGGGCCTTCAGTTACCTCCGTGTCACATTCGGTGTGGTTTCTTGA

mRNA sequence

ATGGACGCCCATTCCTCTTCCTTTTCAAGCTTTTCCGCCTACCTTCGAGCTCTCTCTCTAACCCCTTCTCGTCTTTCTCGCCGGGCTTTCTCTGTTTCCACCTCTTTCGATGAAATGACCACTACTCGATCCACTTCCGGCGTCGACATGCAGAGGACTCTCCGCTGGTTCGACCTCGTCGGTTTTGGCCTCGGTGGGATGATCGGTGCGGGGGTTTTCGTCACCACCGGTCCGGCTACACAGCAAGCTGGACCCGCCATTGTTCTCTCTTACGCCATTGCTGGCCTCTGTGCGCTTTTATCGGCGTTCTGCTACACTGAGTTCGCCGTCGATATGCCTGTTGCTGGTGGGGCCTTCAGTTACCTCCGTGTCACATTCGGTGTGGTTTCTTGA

Coding sequence (CDS)

ATGGACGCCCATTCCTCTTCCTTTTCAAGCTTTTCCGCCTACCTTCGAGCTCTCTCTCTAACCCCTTCTCGTCTTTCTCGCCGGGCTTTCTCTGTTTCCACCTCTTTCGATGAAATGACCACTACTCGATCCACTTCCGGCGTCGACATGCAGAGGACTCTCCGCTGGTTCGACCTCGTCGGTTTTGGCCTCGGTGGGATGATCGGTGCGGGGGTTTTCGTCACCACCGGTCCGGCTACACAGCAAGCTGGACCCGCCATTGTTCTCTCTTACGCCATTGCTGGCCTCTGTGCGCTTTTATCGGCGTTCTGCTACACTGAGTTCGCCGTCGATATGCCTGTTGCTGGTGGGGCCTTCAGTTACCTCCGTGTCACATTCGGTGTGGTTTCTTGA

Protein sequence

MDAHSSSFSSFSAYLRALSLTPSRLSRRAFSVSTSFDEMTTTRSTSGVDMQRTLRWFDLVGFGLGGMIGAGVFVTTGPATQQAGPAIVLSYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVTFGVVS
Homology
[Close]
BLAST of Lsi08G006400 vs. Swiss-Prot
Match: CAAT6_ARATH (Cationic amino acid transporter 6, chloroplastic OS=Arabidopsis thaliana GN=CAT6 PE=2 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 5.9e-43
Identity = 91/123 (73.98%), Postives = 106/123 (86.18%), Query Frame = 1 

Query: 6   SSFSSFSAYLRALSLTPSRLSRRAFSVSTSFDEMTTTRSTSGVDMQRTLRWFDLVGFGLG 65
           SSFSS   YL +LS TPSRLSRRA SVSTS DEM+  R+ SG  M+RTLRW+DL+G G+G
Sbjct: 13  SSFSSLRVYLNSLSATPSRLSRRAISVSTSSDEMSRVRAVSGEQMRRTLRWYDLIGLGIG 72

Query: 66  GMIGAGVFVTTGPATQ-QAGPAIVLSYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRV 125
           GM+GAGVFVTTG A++  AGP+IV+SYAIAGLCALLSAFCYTEFAV +PVAGGAFSY+R+
Sbjct: 73  GMVGAGVFVTTGRASRLDAGPSIVVSYAIAGLCALLSAFCYTEFAVHLPVAGGAFSYIRI 132

Query: 126 TFG 128
           TFG
Sbjct: 133 TFG 135

[Close]
BLAST of Lsi08G006400 vs. Swiss-Prot
Match: CAAT7_ARATH (Cationic amino acid transporter 7, chloroplastic OS=Arabidopsis thaliana GN=CAT7 PE=3 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 2.9e-42
Identity = 90/123 (73.17%), Postives = 106/123 (86.18%), Query Frame = 1 

Query: 6   SSFSSFSAYLRALSLTPSRLSRRAFSVSTSFDEMTTTRSTSGVDMQRTLRWFDLVGFGLG 65
           +SFSS   YL +LS TPSR SRRA SVSTS+DEM+  R+ SG  M+RTLRW+DL+G G+G
Sbjct: 12  TSFSSLRVYLNSLSDTPSRFSRRAVSVSTSYDEMSRVRAVSGEQMRRTLRWYDLIGLGIG 71

Query: 66  GMIGAGVFVTTGPATQ-QAGPAIVLSYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRV 125
           GMIGAGVFVTTG A++  AGP+IV+SYAIAGLCALLSAFCYTEFAV +PVAGGAFSY+R+
Sbjct: 72  GMIGAGVFVTTGRASRLYAGPSIVVSYAIAGLCALLSAFCYTEFAVHLPVAGGAFSYIRI 131

Query: 126 TFG 128
           TFG
Sbjct: 132 TFG 134

[Close]
BLAST of Lsi08G006400 vs. Swiss-Prot
Match: CAAT1_ARATH (Cationic amino acid transporter 1 OS=Arabidopsis thaliana GN=CAT1 PE=1 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.6e-27
Identity = 64/122 (52.46%), Postives = 88/122 (72.13%), Query Frame = 1 

Query: 7   SFSSFSAYLRALSLTPSRLSRRAFSVSTSFDEMTTTRSTSGVDMQRTLRWFDLVGFGLGG 66
           SF S   YL+AL  TPSR   R  + S   DE+   ++ SG +M++TL W+DL+ FG+G 
Sbjct: 27  SFQSMGNYLKALKETPSRFMDRIMTRSLDSDEINEMKARSGHEMKKTLTWWDLMWFGIGA 86

Query: 67  MIGAGVFVTTG-PATQQAGPAIVLSYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVT 126
           +IG+G+FV TG  A   +GPA+VLSY ++G+ A+LS FCYTEFAV++PVAGG+F+YLRV 
Sbjct: 87  VIGSGIFVLTGLEARNHSGPAVVLSYVVSGVSAMLSVFCYTEFAVEIPVAGGSFAYLRVE 146

Query: 127 FG 128
            G
Sbjct: 147 LG 148

[Close]
BLAST of Lsi08G006400 vs. Swiss-Prot
Match: CAAT5_ARATH (Cationic amino acid transporter 5 OS=Arabidopsis thaliana GN=CAT5 PE=1 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 7.7e-27
Identity = 68/122 (55.74%), Postives = 85/122 (69.67%), Query Frame = 1 

Query: 7   SFSSFSAYLRALSLTPSRLSRRAFSVSTSFDEMTTTRSTSGVDMQRTLRWFDLVGFGLGG 66
           SF SF +Y  ALS T SR   R  S S   +E    +  S  +M+R L W+DLV FG G 
Sbjct: 21  SFQSFGSYRAALSQTCSRFKNRLVSRSDDENERFELKKQSEHEMKRCLTWWDLVWFGFGS 80

Query: 67  MIGAGVFVTTGP-ATQQAGPAIVLSYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVT 126
           +IGAG+FV TG  A +QAGPAIVLSY ++GL A+LS FCYTEFAV++PVAGG+F+YLR+ 
Sbjct: 81  VIGAGIFVLTGQEAHEQAGPAIVLSYVVSGLSAMLSVFCYTEFAVEIPVAGGSFAYLRIE 140

Query: 127 FG 128
            G
Sbjct: 141 LG 142

[Close]
BLAST of Lsi08G006400 vs. Swiss-Prot
Match: CAAT8_ARATH (Cationic amino acid transporter 8, vacuolar OS=Arabidopsis thaliana GN=CAT8 PE=2 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.8e-23
Identity = 65/122 (53.28%), Postives = 80/122 (65.57%), Query Frame = 1 

Query: 7   SFSSFSAYLRALSLTPSRLSRRAFSVSTSFDEMTTTRSTSGVDMQRTLRWFDLVGFGLGG 66
           SF SFS Y  ALS T  RL+ R  S S+   E+   R  S   M+R L W+DL+    G 
Sbjct: 38  SFQSFSTYKSALSATCPRLADRLLSRSSDAYELDAARRESENPMRRCLTWWDLLWLSFGS 97

Query: 67  MIGAGVFVTTGP-ATQQAGPAIVLSYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVT 126
           ++G+GVFV TG  A   AGPA+VLSYAI+G+ ALLS  CY EF V++PVAGG+FSYLRV 
Sbjct: 98  VVGSGVFVITGQEARVGAGPAVVLSYAISGVSALLSVLCYAEFGVEIPVAGGSFSYLRVE 157

Query: 127 FG 128
            G
Sbjct: 158 LG 159

[Close]
BLAST of Lsi08G006400 vs. TrEMBL
Match: A0A0A0KCF7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G046250 PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 1.7e-57
Identity = 121/127 (95.28%), Postives = 122/127 (96.06%), Query Frame = 1 

Query: 1   MDAHSSSFSSFSAYLRALSLTPSRLSRRAFSVSTSFDEMTTTRSTSGVDMQRTLRWFDLV 60
           MDAHSSSFSSFSAY  ALS TPSRLSRRAFSVSTSFDEMTTTRSTSGV MQRTLRWFDLV
Sbjct: 1   MDAHSSSFSSFSAYFHALSQTPSRLSRRAFSVSTSFDEMTTTRSTSGVHMQRTLRWFDLV 60

Query: 61  GFGLGGMIGAGVFVTTGPATQQAGPAIVLSYAIAGLCALLSAFCYTEFAVDMPVAGGAFS 120
           GFGLGGMIGAGVFVTTGPAT QAGPAIV+SYAIAGLCALLSAFCYTEFAVDMPVAGGAFS
Sbjct: 61  GFGLGGMIGAGVFVTTGPATLQAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFS 120

Query: 121 YLRVTFG 128
           YLRVTFG
Sbjct: 121 YLRVTFG 127

[Close]
BLAST of Lsi08G006400 vs. TrEMBL
Match: M5WRL1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003270mg PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 2.6e-45
Identity = 102/127 (80.31%), Postives = 114/127 (89.76%), Query Frame = 1 

Query: 5   SSSFSSFSAYLRALSLTPSRLSRRAFSVSTSFDEMTTTRSTSGVDMQRTLRWFDLVGFGL 64
           SSSFSSF AYLRAL+ TP+RL+RRA SVSTS+DEM+  R+ SG DMQ+TLRWFDLVG G+
Sbjct: 12  SSSFSSFRAYLRALAQTPARLARRARSVSTSYDEMSGVRARSGSDMQKTLRWFDLVGLGV 71

Query: 65  GGMIGAGVFVTTGPATQ-QAGPAIVLSYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLR 124
           GGM+GAGVFVTTG A++  AGPAIV+SYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLR
Sbjct: 72  GGMVGAGVFVTTGHASRLYAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLR 131

Query: 125 VTFGVVS 131
           VTFG  S
Sbjct: 132 VTFGEFS 138

[Close]
BLAST of Lsi08G006400 vs. TrEMBL
Match: A0A0R0IAD8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_10G277700 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 5.7e-45
Identity = 97/123 (78.86%), Postives = 109/123 (88.62%), Query Frame = 1 

Query: 5   SSSFSSFSAYLRALSLTPSRLSRRAFSVSTSFDEMTTTRSTSGVDMQRTLRWFDLVGFGL 64
           SSSFSS  AYL ALS TP+RL++RA SVSTS+DEM+  RS SG  M++TLRWFDLVG G+
Sbjct: 4   SSSFSSLRAYLNALSHTPTRLAQRALSVSTSYDEMSQVRSRSGTSMRKTLRWFDLVGLGI 63

Query: 65  GGMIGAGVFVTTGPATQQAGPAIVLSYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRV 124
           GGM+GAGVFVTTG AT+ AGPA++LSYAIAG CALLSAFCYTEFAVDMPVAGGAFSYLRV
Sbjct: 64  GGMVGAGVFVTTGHATRYAGPAVLLSYAIAGFCALLSAFCYTEFAVDMPVAGGAFSYLRV 123

Query: 125 TFG 128
           TFG
Sbjct: 124 TFG 126

[Close]
BLAST of Lsi08G006400 vs. TrEMBL
Match: I1LF01_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 5.7e-45
Identity = 97/123 (78.86%), Postives = 109/123 (88.62%), Query Frame = 1 

Query: 5   SSSFSSFSAYLRALSLTPSRLSRRAFSVSTSFDEMTTTRSTSGVDMQRTLRWFDLVGFGL 64
           SSSFSS  AYL ALS TP+RL++RA SVSTS+DEM+  RS SG  M++TLRWFDLVG G+
Sbjct: 4   SSSFSSLRAYLNALSHTPTRLAQRALSVSTSYDEMSQVRSRSGTSMRKTLRWFDLVGLGI 63

Query: 65  GGMIGAGVFVTTGPATQQAGPAIVLSYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRV 124
           GGM+GAGVFVTTG AT+ AGPA++LSYAIAG CALLSAFCYTEFAVDMPVAGGAFSYLRV
Sbjct: 64  GGMVGAGVFVTTGHATRYAGPAVLLSYAIAGFCALLSAFCYTEFAVDMPVAGGAFSYLRV 123

Query: 125 TFG 128
           TFG
Sbjct: 124 TFG 126

[Close]
BLAST of Lsi08G006400 vs. TrEMBL
Match: A0A067LGI8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24133 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 2.8e-44
Identity = 95/128 (74.22%), Postives = 115/128 (89.84%), Query Frame = 1 

Query: 1   MDAHSSSFSSFSAYLRALSLTPSRLSRRAFSVSTSFDEMTTTRSTSGVDMQRTLRWFDLV 60
           M+ H++SFSSF +YLRA S TP+R +RRA SVSTS++EM+  ++ SG +MQ+TLRW+DLV
Sbjct: 13  MENHATSFSSFMSYLRAFSQTPTRFARRAGSVSTSYEEMSRVKARSGPEMQKTLRWYDLV 72

Query: 61  GFGLGGMIGAGVFVTTGPATQ-QAGPAIVLSYAIAGLCALLSAFCYTEFAVDMPVAGGAF 120
           GFG+GGM+GAGVFVTTG A++  AGPA+V+SYAIAGLCALLSAFCYTEFAVDMPVAGGAF
Sbjct: 73  GFGIGGMVGAGVFVTTGRASRLYAGPAVVVSYAIAGLCALLSAFCYTEFAVDMPVAGGAF 132

Query: 121 SYLRVTFG 128
           SYLRVTFG
Sbjct: 133 SYLRVTFG 140

[Close]
BLAST of Lsi08G006400 vs. TAIR10
Match: AT5G04770.1 (AT5G04770.1 cationic amino acid transporter 6)

HSP 1 Score: 174.9 bits (442), Expect = 3.3e-44
Identity = 91/123 (73.98%), Postives = 106/123 (86.18%), Query Frame = 1 

Query: 6   SSFSSFSAYLRALSLTPSRLSRRAFSVSTSFDEMTTTRSTSGVDMQRTLRWFDLVGFGLG 65
           SSFSS   YL +LS TPSRLSRRA SVSTS DEM+  R+ SG  M+RTLRW+DL+G G+G
Sbjct: 13  SSFSSLRVYLNSLSATPSRLSRRAISVSTSSDEMSRVRAVSGEQMRRTLRWYDLIGLGIG 72

Query: 66  GMIGAGVFVTTGPATQ-QAGPAIVLSYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRV 125
           GM+GAGVFVTTG A++  AGP+IV+SYAIAGLCALLSAFCYTEFAV +PVAGGAFSY+R+
Sbjct: 73  GMVGAGVFVTTGRASRLDAGPSIVVSYAIAGLCALLSAFCYTEFAVHLPVAGGAFSYIRI 132

Query: 126 TFG 128
           TFG
Sbjct: 133 TFG 135

[Close]
BLAST of Lsi08G006400 vs. TAIR10
Match: AT3G10600.1 (AT3G10600.1 cationic amino acid transporter 7)

HSP 1 Score: 172.6 bits (436), Expect = 1.6e-43
Identity = 90/123 (73.17%), Postives = 106/123 (86.18%), Query Frame = 1 

Query: 6   SSFSSFSAYLRALSLTPSRLSRRAFSVSTSFDEMTTTRSTSGVDMQRTLRWFDLVGFGLG 65
           +SFSS   YL +LS TPSR SRRA SVSTS+DEM+  R+ SG  M+RTLRW+DL+G G+G
Sbjct: 12  TSFSSLRVYLNSLSDTPSRFSRRAVSVSTSYDEMSRVRAVSGEQMRRTLRWYDLIGLGIG 71

Query: 66  GMIGAGVFVTTGPATQ-QAGPAIVLSYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRV 125
           GMIGAGVFVTTG A++  AGP+IV+SYAIAGLCALLSAFCYTEFAV +PVAGGAFSY+R+
Sbjct: 72  GMIGAGVFVTTGRASRLYAGPSIVVSYAIAGLCALLSAFCYTEFAVHLPVAGGAFSYIRI 131

Query: 126 TFG 128
           TFG
Sbjct: 132 TFG 134

[Close]
BLAST of Lsi08G006400 vs. TAIR10
Match: AT4G21120.1 (AT4G21120.1 amino acid transporter 1)

HSP 1 Score: 123.6 bits (309), Expect = 8.7e-29
Identity = 64/122 (52.46%), Postives = 88/122 (72.13%), Query Frame = 1 

Query: 7   SFSSFSAYLRALSLTPSRLSRRAFSVSTSFDEMTTTRSTSGVDMQRTLRWFDLVGFGLGG 66
           SF S   YL+AL  TPSR   R  + S   DE+   ++ SG +M++TL W+DL+ FG+G 
Sbjct: 27  SFQSMGNYLKALKETPSRFMDRIMTRSLDSDEINEMKARSGHEMKKTLTWWDLMWFGIGA 86

Query: 67  MIGAGVFVTTG-PATQQAGPAIVLSYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVT 126
           +IG+G+FV TG  A   +GPA+VLSY ++G+ A+LS FCYTEFAV++PVAGG+F+YLRV 
Sbjct: 87  VIGSGIFVLTGLEARNHSGPAVVLSYVVSGVSAMLSVFCYTEFAVEIPVAGGSFAYLRVE 146

Query: 127 FG 128
            G
Sbjct: 147 LG 148

[Close]
BLAST of Lsi08G006400 vs. TAIR10
Match: AT2G34960.1 (AT2G34960.1 cationic amino acid transporter 5)

HSP 1 Score: 121.3 bits (303), Expect = 4.3e-28
Identity = 68/122 (55.74%), Postives = 85/122 (69.67%), Query Frame = 1 

Query: 7   SFSSFSAYLRALSLTPSRLSRRAFSVSTSFDEMTTTRSTSGVDMQRTLRWFDLVGFGLGG 66
           SF SF +Y  ALS T SR   R  S S   +E    +  S  +M+R L W+DLV FG G 
Sbjct: 21  SFQSFGSYRAALSQTCSRFKNRLVSRSDDENERFELKKQSEHEMKRCLTWWDLVWFGFGS 80

Query: 67  MIGAGVFVTTGP-ATQQAGPAIVLSYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVT 126
           +IGAG+FV TG  A +QAGPAIVLSY ++GL A+LS FCYTEFAV++PVAGG+F+YLR+ 
Sbjct: 81  VIGAGIFVLTGQEAHEQAGPAIVLSYVVSGLSAMLSVFCYTEFAVEIPVAGGSFAYLRIE 140

Query: 127 FG 128
            G
Sbjct: 141 LG 142

[Close]
BLAST of Lsi08G006400 vs. TAIR10
Match: AT1G17120.1 (AT1G17120.1 cationic amino acid transporter 8)

HSP 1 Score: 110.2 bits (274), Expect = 1.0e-24
Identity = 65/122 (53.28%), Postives = 80/122 (65.57%), Query Frame = 1 

Query: 7   SFSSFSAYLRALSLTPSRLSRRAFSVSTSFDEMTTTRSTSGVDMQRTLRWFDLVGFGLGG 66
           SF SFS Y  ALS T  RL+ R  S S+   E+   R  S   M+R L W+DL+    G 
Sbjct: 38  SFQSFSTYKSALSATCPRLADRLLSRSSDAYELDAARRESENPMRRCLTWWDLLWLSFGS 97

Query: 67  MIGAGVFVTTGP-ATQQAGPAIVLSYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRVT 126
           ++G+GVFV TG  A   AGPA+VLSYAI+G+ ALLS  CY EF V++PVAGG+FSYLRV 
Sbjct: 98  VVGSGVFVITGQEARVGAGPAVVLSYAISGVSALLSVLCYAEFGVEIPVAGGSFSYLRVE 157

Query: 127 FG 128
            G
Sbjct: 158 LG 159

[Close]
BLAST of Lsi08G006400 vs. NCBI nr
Match: gi|778710426|ref|XP_011656572.1| (PREDICTED: cationic amino acid transporter 7, chloroplastic [Cucumis sativus])

HSP 1 Score: 229.9 bits (585), Expect = 2.5e-57
Identity = 121/127 (95.28%), Postives = 122/127 (96.06%), Query Frame = 1 

Query: 1   MDAHSSSFSSFSAYLRALSLTPSRLSRRAFSVSTSFDEMTTTRSTSGVDMQRTLRWFDLV 60
           MDAHSSSFSSFSAY  ALS TPSRLSRRAFSVSTSFDEMTTTRSTSGV MQRTLRWFDLV
Sbjct: 1   MDAHSSSFSSFSAYFHALSQTPSRLSRRAFSVSTSFDEMTTTRSTSGVHMQRTLRWFDLV 60

Query: 61  GFGLGGMIGAGVFVTTGPATQQAGPAIVLSYAIAGLCALLSAFCYTEFAVDMPVAGGAFS 120
           GFGLGGMIGAGVFVTTGPAT QAGPAIV+SYAIAGLCALLSAFCYTEFAVDMPVAGGAFS
Sbjct: 61  GFGLGGMIGAGVFVTTGPATLQAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFS 120

Query: 121 YLRVTFG 128
           YLRVTFG
Sbjct: 121 YLRVTFG 127

[Close]
BLAST of Lsi08G006400 vs. NCBI nr
Match: gi|659113504|ref|XP_008456609.1| (PREDICTED: cationic amino acid transporter 6, chloroplastic [Cucumis melo])

HSP 1 Score: 228.0 bits (580), Expect = 9.3e-57
Identity = 120/127 (94.49%), Postives = 121/127 (95.28%), Query Frame = 1 

Query: 1   MDAHSSSFSSFSAYLRALSLTPSRLSRRAFSVSTSFDEMTTTRSTSGVDMQRTLRWFDLV 60
           MDAHSSSFSSFSAY  ALS TPSRLSRRAFSVSTSFDEMTTTRSTSGV MQRTLRWFDLV
Sbjct: 55  MDAHSSSFSSFSAYFHALSQTPSRLSRRAFSVSTSFDEMTTTRSTSGVHMQRTLRWFDLV 114

Query: 61  GFGLGGMIGAGVFVTTGPATQQAGPAIVLSYAIAGLCALLSAFCYTEFAVDMPVAGGAFS 120
           GFGLGGMIGAGVFVTTGPA  QAGPAIV+SYAIAGLCALLSAFCYTEFAVDMPVAGGAFS
Sbjct: 115 GFGLGGMIGAGVFVTTGPAALQAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFS 174

Query: 121 YLRVTFG 128
           YLRVTFG
Sbjct: 175 YLRVTFG 181

[Close]
BLAST of Lsi08G006400 vs. NCBI nr
Match: gi|225464416|ref|XP_002269556.1| (PREDICTED: cationic amino acid transporter 6, chloroplastic [Vitis vinifera])

HSP 1 Score: 194.9 bits (494), Expect = 8.8e-47
Identity = 105/129 (81.40%), Postives = 116/129 (89.92%), Query Frame = 1 

Query: 1   MDAH-SSSFSSFSAYLRALSLTPSRLSRRAFSVSTSFDEMTTTRSTSGVDMQRTLRWFDL 60
           MD H SSSFSSF+AY RAL+ TPSRL+RRA SVSTSF+EM+  R+ SG DMQR LRWFDL
Sbjct: 1   MDTHGSSSFSSFTAYARALAQTPSRLARRACSVSTSFEEMSRVRARSGSDMQRNLRWFDL 60

Query: 61  VGFGLGGMIGAGVFVTTGPATQ-QAGPAIVLSYAIAGLCALLSAFCYTEFAVDMPVAGGA 120
           VGFGLGGM+GAGVFVTTG A++  AGPA+VLSYAIAG+CALLSAFCYTEFAVDMPVAGGA
Sbjct: 61  VGFGLGGMVGAGVFVTTGRASRLYAGPAVVLSYAIAGICALLSAFCYTEFAVDMPVAGGA 120

Query: 121 FSYLRVTFG 128
           FSYLRVTFG
Sbjct: 121 FSYLRVTFG 129

[Close]
BLAST of Lsi08G006400 vs. NCBI nr
Match: gi|595914171|ref|XP_007214662.1| (hypothetical protein PRUPE_ppa003270mg [Prunus persica])

HSP 1 Score: 189.5 bits (480), Expect = 3.7e-45
Identity = 102/127 (80.31%), Postives = 114/127 (89.76%), Query Frame = 1 

Query: 5   SSSFSSFSAYLRALSLTPSRLSRRAFSVSTSFDEMTTTRSTSGVDMQRTLRWFDLVGFGL 64
           SSSFSSF AYLRAL+ TP+RL+RRA SVSTS+DEM+  R+ SG DMQ+TLRWFDLVG G+
Sbjct: 12  SSSFSSFRAYLRALAQTPARLARRARSVSTSYDEMSGVRARSGSDMQKTLRWFDLVGLGV 71

Query: 65  GGMIGAGVFVTTGPATQ-QAGPAIVLSYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLR 124
           GGM+GAGVFVTTG A++  AGPAIV+SYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLR
Sbjct: 72  GGMVGAGVFVTTGHASRLYAGPAIVISYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLR 131

Query: 125 VTFGVVS 131
           VTFG  S
Sbjct: 132 VTFGEFS 138

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BLAST of Lsi08G006400 vs. NCBI nr
Match: gi|955343862|ref|XP_014618268.1| (PREDICTED: cationic amino acid transporter 7, chloroplastic-like [Glycine max])

HSP 1 Score: 188.3 bits (477), Expect = 8.2e-45
Identity = 97/123 (78.86%), Postives = 109/123 (88.62%), Query Frame = 1 

Query: 5   SSSFSSFSAYLRALSLTPSRLSRRAFSVSTSFDEMTTTRSTSGVDMQRTLRWFDLVGFGL 64
           SSSFSS  AYL ALS TP+RL++RA SVSTS+DEM+  RS SG  M++TLRWFDLVG G+
Sbjct: 4   SSSFSSLRAYLNALSHTPTRLAQRALSVSTSYDEMSQVRSRSGTSMRKTLRWFDLVGLGI 63

Query: 65  GGMIGAGVFVTTGPATQQAGPAIVLSYAIAGLCALLSAFCYTEFAVDMPVAGGAFSYLRV 124
           GGM+GAGVFVTTG AT+ AGPA++LSYAIAG CALLSAFCYTEFAVDMPVAGGAFSYLRV
Sbjct: 64  GGMVGAGVFVTTGHATRYAGPAVLLSYAIAGFCALLSAFCYTEFAVDMPVAGGAFSYLRV 123

Query: 125 TFG 128
           TFG
Sbjct: 124 TFG 126

The following BLAST results are available for this feature:
BLAST of Lsi08G006400 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CAAT6_ARATH5.9e-4373.98Cationic amino acid transporter 6, chloroplastic OS=Arabidopsis thaliana GN=CAT6... [more]
CAAT7_ARATH2.9e-4273.17Cationic amino acid transporter 7, chloroplastic OS=Arabidopsis thaliana GN=CAT7... [more]
CAAT1_ARATH1.6e-2752.46Cationic amino acid transporter 1 OS=Arabidopsis thaliana GN=CAT1 PE=1 SV=1[more]
CAAT5_ARATH7.7e-2755.74Cationic amino acid transporter 5 OS=Arabidopsis thaliana GN=CAT5 PE=1 SV=1[more]
CAAT8_ARATH1.8e-2353.28Cationic amino acid transporter 8, vacuolar OS=Arabidopsis thaliana GN=CAT8 PE=2... [more]
BLAST of Lsi08G006400 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KCF7_CUCSA1.7e-5795.28Uncharacterized protein OS=Cucumis sativus GN=Csa_6G046250 PE=4 SV=1[more]
M5WRL1_PRUPE2.6e-4580.31Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa003270mg PE=4 SV=1[more]
A0A0R0IAD8_SOYBN5.7e-4578.86Uncharacterized protein OS=Glycine max GN=GLYMA_10G277700 PE=4 SV=1[more]
I1LF01_SOYBN5.7e-4578.86Uncharacterized protein OS=Glycine max PE=4 SV=1[more]
A0A067LGI8_JATCU2.8e-4474.22Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24133 PE=4 SV=1[more]
BLAST of Lsi08G006400 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G04770.13.3e-4473.98 cationic amino acid transporter 6[more]
AT3G10600.11.6e-4373.17 cationic amino acid transporter 7[more]
AT4G21120.18.7e-2952.46 amino acid transporter 1[more]
AT2G34960.14.3e-2855.74 cationic amino acid transporter 5[more]
AT1G17120.11.0e-2453.28 cationic amino acid transporter 8[more]
BLAST of Lsi08G006400 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778710426|ref|XP_011656572.1|2.5e-5795.28PREDICTED: cationic amino acid transporter 7, chloroplastic [Cucumis sativus][more]
gi|659113504|ref|XP_008456609.1|9.3e-5794.49PREDICTED: cationic amino acid transporter 6, chloroplastic [Cucumis melo][more]
gi|225464416|ref|XP_002269556.1|8.8e-4781.40PREDICTED: cationic amino acid transporter 6, chloroplastic [Vitis vinifera][more]
gi|595914171|ref|XP_007214662.1|3.7e-4580.31hypothetical protein PRUPE_ppa003270mg [Prunus persica][more]
gi|955343862|ref|XP_014618268.1|8.2e-4578.86PREDICTED: cationic amino acid transporter 7, chloroplastic-like [Glycine max][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
GO:0006810transport
GO:0003333amino acid transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0015171amino acid transmembrane transporter activity
Vocabulary: INTERPRO
TermDefinition
IPR004841AA-permease/SLC12A_dom
IPR002293AA/rel_permease1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:1902475 L-alpha-amino acid transmembrane transport
biological_process GO:0003333 amino acid transmembrane transport
biological_process GO:0055085 transmembrane transport
biological_process GO:0006810 transport
cellular_component GO:0005887 integral component of plasma membrane
cellular_component GO:0016020 membrane
molecular_function GO:0015297 antiporter activity
molecular_function GO:0015179 L-amino acid transmembrane transporter activity
molecular_function GO:0015171 amino acid transmembrane transporter activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi08G006400.1Lsi08G006400.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002293Amino acid/polyamine transporter IPANTHERPTHR11785AMINO ACID TRANSPORTERcoord: 15..127
score: 4.8
IPR004841Amino acid permease/ SLC12A domainPFAMPF00324AA_permeasecoord: 61..121
score: 3.6
NoneNo IPR availablePANTHERPTHR11785:SF331SUBFAMILY NOT NAMEDcoord: 15..127
score: 4.8

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi08G006400Cucumber (Chinese Long) v2culsiB389
Lsi08G006400Cucumber (Chinese Long) v2culsiB478
Lsi08G006400Melon (DHL92) v3.5.1lsimeB463
Lsi08G006400Melon (DHL92) v3.5.1lsimeB470
Lsi08G006400Watermelon (Charleston Gray)lsiwcgB435
Lsi08G006400Watermelon (Charleston Gray)lsiwcgB443
Lsi08G006400Watermelon (97103) v1lsiwmB475
Lsi08G006400Watermelon (97103) v1lsiwmB485
Lsi08G006400Cucumber (Gy14) v2cgyblsiB354
Lsi08G006400Cucumber (Gy14) v2cgyblsiB444
Lsi08G006400Melon (DHL92) v3.6.1lsimedB491
Lsi08G006400Silver-seed gourdcarlsiB059
Lsi08G006400Silver-seed gourdcarlsiB758
Lsi08G006400Silver-seed gourdcarlsiB769
Lsi08G006400Cucumber (Chinese Long) v3cuclsiB509
Lsi08G006400Watermelon (97103) v2lsiwmbB439
Lsi08G006400Watermelon (97103) v2lsiwmbB448
Lsi08G006400Wax gourdlsiwgoB593
Lsi08G006400Wax gourdlsiwgoB618
Lsi08G006400Bottle gourd (USVL1VR-Ls)lsilsiB152
Lsi08G006400Cucumber (Gy14) v1cgylsiB588
Lsi08G006400Cucurbita maxima (Rimu)cmalsiB294
Lsi08G006400Cucurbita maxima (Rimu)cmalsiB703
Lsi08G006400Cucurbita maxima (Rimu)cmalsiB706
Lsi08G006400Cucurbita moschata (Rifu)cmolsiB282
Lsi08G006400Cucurbita moschata (Rifu)cmolsiB697
Lsi08G006400Cucurbita moschata (Rifu)cmolsiB700
Lsi08G006400Cucurbita pepo (Zucchini)cpelsiB158
Lsi08G006400Cucurbita pepo (Zucchini)cpelsiB382
Lsi08G006400Cucurbita pepo (Zucchini)cpelsiB384
Lsi08G006400Wild cucumber (PI 183967)cpilsiB487