Lsi08G005660 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi08G005660
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr08 : 13897716 .. 13899245 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATGAGTACAGTTTGCATGAGAGTATGATCATACATGGCTATTCAGATTCAAACTACGTGTTGTGTCGAATTAGAAAGAATGAAAGAGCCAAAAGAAAAACAGAGAAAATATGTAATATTCAACCTATCAAGAAGAGGGTTTTGGCACCTAACATTAATGAGATGGAAAAGAATAACAAAAGAGGACCTACAAGAAAAGCAAATAAAAGACAATCTTCGTCTGAGTTGCAGCTAGTAGAGCCAAGAGTGGTGGCACCTAATATGGTCTACAACATGCCTTGTGATCCCACCAACCAAATTACTACTAATTTGTCCTACTCGATGTTAATGACCACTGACCAAGATACTAGTAATGTGCCTTATAAGGCTGAGATAGCCCGTAATCAAAGTACTAGTGACATGCCATATGTGCATAACATGGCCATCAACCAGAGTACAAATGATGTGCCTTATATGCTTGGAATGTCCACCTACCAAGGTACTAGTAACGTGCCTTACGAAGCTGATCAGATAGCCAATAATCAAAGTACTAGTGGCATATCATATGTGCATAACATGACCATCAACCAGAGTACAAGTGATGTGCATGAAGGTACTAGTAACGTGCCTTATGAGGCTGATCAGAAAGCCAGTAATCAAAGTACTAGTGACATGCCATATGTGCATAACATGACCATCAACCAGAGTACAAGTGATGTGCATGAAGGTACTAGTAACGTGCCTTATGAGGCTGATCAGAAAGCCAGTAATCAAAGTACTAGTGACATGCCATATGTGCATAACATGACCATCAACCAGAGTACAAGTGATGTGCATGAAGGTACTAGTAACGTGCCTTATGAGGCTGATCAGAAAGCCAGTAATCAAAGTACTAGTGACATGCCATATGTGCATAACATGACCATCAACCAGAGTACAAGTGATGTGCATGAAGGTACTAGTAACATGCCTTATGAGGCTGATCAGAAAGCCAGTAATCAAAGTACTAGTGACATATCATATGTGCATAACATGACCATCAACCAAAGTACAAGTGATGTCCCTTACATGCTTGGAATGACCACAGACCAGGATACTAGTAATGTGCCTTGTGAGGTTGATCATATAGTCACTAATCAAAATACTAGTGATGACATGTCATACATTCATAACACGACCATCTACCAGAGTACAAGTGGTGCGCCTTGCATGCCTGAAATGACCATCAATCAATTTACTAATGATGTGTCTTACTTGCCTCAAATGTCCACCGACCAAGGTACTAGTGGTGTGTCTCATGATCCTAACATGACCATCAACCAAAGTACGTGTGACGTGCAAAATATGACTATCACCCAGAGTACGAATGGTGTGTCTAACATTCCTGAAATCACCACCAACAGGATGGAACCTACTGCCAACAAGTTGCAATGGATAGATGATATTTTAGATTTTAGTGATACAAAATATGATGATTTGGCGGACTTAAGTTCATTAGATGAGTATTGGGATGAGAGTGGGATAGTTGGTCAAGAGATTAATGTGTGA

mRNA sequence

ATGCATGAGTACAGTTTGCATGAGAGTATGATCATACATGGCTATTCAGATTCAAACTACGTGTTGTGTCGAATTAGAAAGAATGAAAGAGCCAAAAGAAAAACAGAGAAAATATGTAATATTCAACCTATCAAGAAGAGGGTTTTGGCACCTAACATTAATGAGATGGAAAAGAATAACAAAAGAGGACCTACAAGAAAAGCAAATAAAAGACAATCTTCGTCTGAGTTGCAGCTAGTAGAGCCAAGAGTGGTGGCACCTAATATGGTCTACAACATGCCTTGTGATCCCACCAACCAAATTACTACTAATTTGTCCTACTCGATGTTAATGACCACTGACCAAGATACTAGTAATGTGCCTTATAAGGCTGAGATAGCCCGTAATCAAAGTACTAGTGACATGCCATATGTGCATAACATGGCCATCAACCAGAGTACAAATGATGTGCCTTATATGCTTGGAATGTCCACCTACCAAGGTACTAGTAACGTGCCTTACGAAGCTGATCAGATAGCCAATAATCAAAGTACTAGTGGCATATCATATGTGCATAACATGACCATCAACCAGAGTACAAGTGATGTGCATGAAGGTACTAGTAACGTGCCTTATGAGGCTGATCAGAAAGCCAGTAATCAAAGTACTAGTGACATGCCATATGTGCATAACATGACCATCAACCAGAGTACAAGTGATGTGCATGAAGGTACTAGTAACGTGCCTTATGAGGCTGATCAGAAAGCCAGTAATCAAAGTACTAGTGACATGCCATATGTGCATAACATGACCATCAACCAGAGTACAAGTGATGTGCATGAAGGTACTAGTAACGTGCCTTATGAGGCTGATCAGAAAGCCAGTAATCAAAGTACTAGTGACATGCCATATGTGCATAACATGACCATCAACCAGAGTACAAGTGATGTGCATGAAGGTACTAGTAACATGCCTTATGAGGCTGATCAGAAAGCCAGTAATCAAAGTACTAGTGACATATCATATGTGCATAACATGACCATCAACCAAAGTACAAGTGATGTCCCTTACATGCTTGGAATGACCACAGACCAGGATACTAGTAATGTGCCTTGTGAGGTTGATCATATAGTCACTAATCAAAATACTAGTGATGACATGTCATACATTCATAACACGACCATCTACCAGAGTACAAGTGGTGCGCCTTGCATGCCTGAAATGACCATCAATCAATTTACTAATGATGTGTCTTACTTGCCTCAAATGTCCACCGACCAAGGTACTAGTGGTGTGTCTCATGATCCTAACATGACCATCAACCAAAGTACGTGTGACGTGCAAAATATGACTATCACCCAGAGTACGAATGGTGTGTCTAACATTCCTGAAATCACCACCAACAGGATGGAACCTACTGCCAACAAGTTGCAATGGATAGATGATATTTTAGATTTTAGTGATACAAAATATGATGATTTGGCGGACTTAAGTTCATTAGATGAGTATTGGGATGAGAGTGGGATAGTTGGTCAAGAGATTAATGTGTGA

Coding sequence (CDS)

ATGCATGAGTACAGTTTGCATGAGAGTATGATCATACATGGCTATTCAGATTCAAACTACGTGTTGTGTCGAATTAGAAAGAATGAAAGAGCCAAAAGAAAAACAGAGAAAATATGTAATATTCAACCTATCAAGAAGAGGGTTTTGGCACCTAACATTAATGAGATGGAAAAGAATAACAAAAGAGGACCTACAAGAAAAGCAAATAAAAGACAATCTTCGTCTGAGTTGCAGCTAGTAGAGCCAAGAGTGGTGGCACCTAATATGGTCTACAACATGCCTTGTGATCCCACCAACCAAATTACTACTAATTTGTCCTACTCGATGTTAATGACCACTGACCAAGATACTAGTAATGTGCCTTATAAGGCTGAGATAGCCCGTAATCAAAGTACTAGTGACATGCCATATGTGCATAACATGGCCATCAACCAGAGTACAAATGATGTGCCTTATATGCTTGGAATGTCCACCTACCAAGGTACTAGTAACGTGCCTTACGAAGCTGATCAGATAGCCAATAATCAAAGTACTAGTGGCATATCATATGTGCATAACATGACCATCAACCAGAGTACAAGTGATGTGCATGAAGGTACTAGTAACGTGCCTTATGAGGCTGATCAGAAAGCCAGTAATCAAAGTACTAGTGACATGCCATATGTGCATAACATGACCATCAACCAGAGTACAAGTGATGTGCATGAAGGTACTAGTAACGTGCCTTATGAGGCTGATCAGAAAGCCAGTAATCAAAGTACTAGTGACATGCCATATGTGCATAACATGACCATCAACCAGAGTACAAGTGATGTGCATGAAGGTACTAGTAACGTGCCTTATGAGGCTGATCAGAAAGCCAGTAATCAAAGTACTAGTGACATGCCATATGTGCATAACATGACCATCAACCAGAGTACAAGTGATGTGCATGAAGGTACTAGTAACATGCCTTATGAGGCTGATCAGAAAGCCAGTAATCAAAGTACTAGTGACATATCATATGTGCATAACATGACCATCAACCAAAGTACAAGTGATGTCCCTTACATGCTTGGAATGACCACAGACCAGGATACTAGTAATGTGCCTTGTGAGGTTGATCATATAGTCACTAATCAAAATACTAGTGATGACATGTCATACATTCATAACACGACCATCTACCAGAGTACAAGTGGTGCGCCTTGCATGCCTGAAATGACCATCAATCAATTTACTAATGATGTGTCTTACTTGCCTCAAATGTCCACCGACCAAGGTACTAGTGGTGTGTCTCATGATCCTAACATGACCATCAACCAAAGTACGTGTGACGTGCAAAATATGACTATCACCCAGAGTACGAATGGTGTGTCTAACATTCCTGAAATCACCACCAACAGGATGGAACCTACTGCCAACAAGTTGCAATGGATAGATGATATTTTAGATTTTAGTGATACAAAATATGATGATTTGGCGGACTTAAGTTCATTAGATGAGTATTGGGATGAGAGTGGGATAGTTGGTCAAGAGATTAATGTGTGA

Protein sequence

MHEYSLHESMIIHGYSDSNYVLCRIRKNERAKRKTEKICNIQPIKKRVLAPNINEMEKNNKRGPTRKANKRQSSSELQLVEPRVVAPNMVYNMPCDPTNQITTNLSYSMLMTTDQDTSNVPYKAEIARNQSTSDMPYVHNMAINQSTNDVPYMLGMSTYQGTSNVPYEADQIANNQSTSGISYVHNMTINQSTSDVHEGTSNVPYEADQKASNQSTSDMPYVHNMTINQSTSDVHEGTSNVPYEADQKASNQSTSDMPYVHNMTINQSTSDVHEGTSNVPYEADQKASNQSTSDMPYVHNMTINQSTSDVHEGTSNMPYEADQKASNQSTSDISYVHNMTINQSTSDVPYMLGMTTDQDTSNVPCEVDHIVTNQNTSDDMSYIHNTTIYQSTSGAPCMPEMTINQFTNDVSYLPQMSTDQGTSGVSHDPNMTINQSTCDVQNMTITQSTNGVSNIPEITTNRMEPTANKLQWIDDILDFSDTKYDDLADLSSLDEYWDESGIVGQEINV

Homology

[Close]

BLAST of Lsi08G005660 vs. TrEMBL
Match: A8XTG9_CAEBR (Protein CBG18512 OS=Caenorhabditis briggsae GN=CBG18512 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.1e-11
Identity = 107/423 (25.30%), Postives = 176/423 (41.61%), Query Frame = 1


Query: 73  SSSELQLVEPRVVAPNMVYNMPCDP-------TNQITTNLSYSMLMTTDQDTSNVPYKAE 132
           SSSE+              + PC+        ++++T+  S S   T  Q TS+ P + E
Sbjct: 264 SSSEMTSEASSSTVTQSTSSEPCETESTGSSSSSEMTSEASSS---TVTQSTSSEPCETE 323

Query: 133 IARNQSTSDMPY-VHNMAINQSTNDVPYMLGMSTYQGTSNVPYEADQIANNQSTS----- 192
              + S+S+M     +  + QST+  P     +    +S +  EA      QSTS     
Sbjct: 324 STGSSSSSEMTSEASSSTVTQSTSSEPCETDSTGSSSSSEMTSEASSSTVTQSTSSEPFE 383

Query: 193 ----GISYVHNMTINQSTSDVHEGTSNVPYEADQKASNQSTSDMPYVHNMTINQSTSDVH 252
               G S    MT   S+S V + TS+ P E +   S+ S+        MT   S+S V 
Sbjct: 384 TESTGSSSSSEMTSEASSSTVTQSTSSEPCETESTGSSSSSE-------MTSEASSSTVT 443

Query: 253 EGTSNVPYEADQKASNQSTSDMPYVHNMTINQSTSDVHEGTSNVPYEADQKASNQSTSDM 312
           + TS+ P+E +   S+ S+        MT   S+S V + TS+ P E +   S+ S+   
Sbjct: 444 QSTSSEPFETESTGSSSSSE-------MTSEASSSTVTQSTSSEPCETESTGSSSSSE-- 503

Query: 313 PYVHNMTINQSTSDVHEGTSNMPYEADQKASNQSTSDISYVHNMTINQSTSDVPYMLGMT 372
                MT   S+S V + TS+ P E +   S+ S+   S   + T+ QSTS  P+    T
Sbjct: 504 -----MTSEASSSTVTQSTSSEPCETESTGSSSSSEMTSEASSSTVTQSTSSEPFETEST 563

Query: 373 TDQDTSNVPCEVDHIVTNQNTSDDMSYIHNTTIYQSTSGAPCMPEMTINQFTNDVSYLPQ 432
               +S +  E                  ++T+ QSTS  PC  E T +  +++++    
Sbjct: 564 GSSSSSEMTSEAS----------------SSTVTQSTSSEPCETESTGSSSSSEMTSEAS 623

Query: 433 MSTDQGTSGVSHDPNMTINQSTCDVQNMTITQSTN---------GVSNIPEITTNRMEPT 470
            S     + +         + TC+  + T+TQST+         G S+  E+T+     T
Sbjct: 624 SSYCNSINIIRAXXXXXXXEMTCEASSSTVTQSTSSEPCETDSTGSSSSSEMTSEASSST 646

[Close]

BLAST of Lsi08G005660 vs. TrEMBL
Match: A0A0B2XF53_METRA (Reverse transcriptase, RNaseH OS=Metarhizium robertsii (strain ARSEF 23 / ATCC MYA-3075) GN=MAA_11812 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 7.5e-08
Identity = 77/265 (29.06%), Postives = 113/265 (42.64%), Query Frame = 1


Query: 200 TSNVPYEADQKASNQSTSDMPYVHNMTINQSTSDVHEGTSNVPYEADQKASNQSTSDMPY 259
           TS     ADQ+ ++Q T+D       T +Q T+D            DQK ++Q T+D   
Sbjct: 39  TSTSQKTADQETADQKTTDQKTTDQKTTDQKTTDQKTTDQKT---TDQKTTDQKTTDQKT 98

Query: 260 VHNMTINQSTSDVHEGTSNVPYEADQKASNQSTSDMPYVHNMTINQSTSDVHEGTSNMPY 319
               T +Q T+D            DQK ++Q T+D       T +Q T+D  + T++   
Sbjct: 99  TDQKTTDQKTTDQKT--------TDQKTTDQKTTDQKTTDQKTTDQKTTD--QKTTDQK- 158

Query: 320 EADQKASNQSTSDISYVHNMTINQSTSDVPYMLGMTTDQDTSNVPCEVDHIVTNQNTSDD 379
             DQK ++Q T+D       T +Q T+D       TTDQ T+      D   T+Q T+D 
Sbjct: 159 TTDQKTTDQKTTDQKTTDQKTTDQKTTDQKTTDQKTTDQKTT------DQKTTDQKTTDQ 218

Query: 380 MSYIHNTTIYQSTSGAPCMPEMTINQFTNDVSYLPQMSTDQGTSGVSHDPNMTINQSTCD 439
            +    TT  Q T+      + T +Q T D     Q +TDQ T+        T +Q T D
Sbjct: 219 KTTDQKTT-DQKTTDQKTTDQKTTDQKTTDQKTTDQKTTDQKTTDQKTTDQKTTDQKTTD 278

Query: 440 VQNMTITQSTNGVSNIPEITTNRME 465
              MT  Q T       + TT R +
Sbjct: 279 --QMTTDQKTTDQKTTDQTTTKRRD 280

[Close]

BLAST of Lsi08G005660 vs. TrEMBL
Match: A0A0A0LFJ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G838730 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 3.7e-07
Identity = 58/164 (35.37%), Postives = 79/164 (48.17%), Query Frame = 1


Query: 1   MHEYSLHESMIIHGYSDSNYVLCRIRKNERAKRKTEKICNI-QPIKKRVLAPNINEMEKN 60
           MHEY+LH + +  G  D NYVLCRIR+NERA+RK E    + QP KKR+ AP I+  E+ 
Sbjct: 143 MHEYNLHPNYLCEGV-DPNYVLCRIRRNERARRKLEIQGELKQPNKKRIKAPKISRNER- 202

Query: 61  NKRGPTRKANKRQSSSELQLV-EPRVVAPNMVYNMPCD---PTNQITTNLSYSMLMTTDQ 120
                  KA  R+   ELQ + + R +    +YN        T+Q  + + Y   MTT+Q
Sbjct: 203 ------PKAKTRERCDELQPIDDQRAITCETIYNSDIRHDMKTHQDISVVDYLPNMTTNQ 262

Query: 121 DTSNVPYKAEIARNQSTSDMPYVHNMAINQSTNDVPYMLGMSTY 160
           D  N         N S     Y   M  +    D+  +   STY
Sbjct: 263 DNIN--------ENISLGTEDYEPCMLTDDELKDIQTLGEFSTY 290

[Close]

BLAST of Lsi08G005660 vs. TrEMBL
Match: A0A0A0M0I5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G652300 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.1e-06
Identity = 55/164 (33.54%), Postives = 76/164 (46.34%), Query Frame = 1


Query: 1   MHEYSLHESMIIHGYSDSNYVLCRIRKNERAKRKTEKICN--IQPIKKRVLAPNINEMEK 60
           MHEYS+H+  +     DSNYVLCR+RKNER KRK  +I     QP KKR+ AP+I++ E+
Sbjct: 173 MHEYSMHQRYLRCEGVDSNYVLCRMRKNERVKRKLLEIQGEAKQPNKKRIKAPHISDNER 232

Query: 61  NNKRGPTRKANKRQSSSELQLVEPRVVAPNMVYNMPCDP---TNQITTNLSYSMLMTTDQ 120
                            ELQ ++ R      +YN+   P   T+Q  + +     MTT+Q
Sbjct: 233 ---------------CDELQPIDQRATTCETIYNLDIRPDMNTHQDISVVDRVPNMTTNQ 292

Query: 121 DTSNVPYKAEIARNQSTSDMPYVHNMAINQSTNDVPYMLGMSTY 160
           D  N         N S     YV  M  +    D+  +    TY
Sbjct: 293 DNRN--------ENTSLGIEDYVPCMPADDEFKDIRTLDEFCTY 313

[Close]

BLAST of Lsi08G005660 vs. TrEMBL
Match: A0A0A0KXM1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G296900 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.1e-06
Identity = 58/163 (35.58%), Postives = 77/163 (47.24%), Query Frame = 1


Query: 1   MHEYSLHESMIIHGYSDSNYVLCRIRKNERAKRKTEKICNI-QPIKKRVLAPNINEMEKN 60
           MHEYSLH   +     D NYVLCRIRKN+RAKRK E    + Q  KKR+    I+    N
Sbjct: 143 MHEYSLHPDYLRCEGVDPNYVLCRIRKNQRAKRKLETESELKQSNKKRMKVREIS----N 202

Query: 61  NKRGPTRKANKRQSSSELQLVEPRVVAPNMVYNMPCD---PTNQITTNLSYSMLMTTDQD 120
           N+R P  K   ++   ELQ ++ R +    +YN        T+Q  T + +   MTT+QD
Sbjct: 203 NER-PKAKTKTKKRCDELQPIDQRAIICETIYNSDIRHDVNTHQDITVVDHVPNMTTNQD 262

Query: 121 TSNVPYKAEIARNQSTSDMPYVHNMAINQSTNDVPYMLGMSTY 160
             N         N S     YV  M+ +    D    +  STY
Sbjct: 263 NIN--------ENTSLGTKEYVPCMSTDNELRDEFNNVDFSTY 292

[Close]

BLAST of Lsi08G005660 vs. NCBI nr
Match: gi|268554918|ref|XP_002635447.1| (Hypothetical protein CBG18512 [Caenorhabditis briggsae])

HSP 1 Score: 79.7 bits (195), Expect = 1.6e-11
Identity = 107/423 (25.30%), Postives = 176/423 (41.61%), Query Frame = 1


Query: 73  SSSELQLVEPRVVAPNMVYNMPCDP-------TNQITTNLSYSMLMTTDQDTSNVPYKAE 132
           SSSE+              + PC+        ++++T+  S S   T  Q TS+ P + E
Sbjct: 264 SSSEMTSEASSSTVTQSTSSEPCETESTGSSSSSEMTSEASSS---TVTQSTSSEPCETE 323

Query: 133 IARNQSTSDMPY-VHNMAINQSTNDVPYMLGMSTYQGTSNVPYEADQIANNQSTS----- 192
              + S+S+M     +  + QST+  P     +    +S +  EA      QSTS     
Sbjct: 324 STGSSSSSEMTSEASSSTVTQSTSSEPCETDSTGSSSSSEMTSEASSSTVTQSTSSEPFE 383

Query: 193 ----GISYVHNMTINQSTSDVHEGTSNVPYEADQKASNQSTSDMPYVHNMTINQSTSDVH 252
               G S    MT   S+S V + TS+ P E +   S+ S+        MT   S+S V 
Sbjct: 384 TESTGSSSSSEMTSEASSSTVTQSTSSEPCETESTGSSSSSE-------MTSEASSSTVT 443

Query: 253 EGTSNVPYEADQKASNQSTSDMPYVHNMTINQSTSDVHEGTSNVPYEADQKASNQSTSDM 312
           + TS+ P+E +   S+ S+        MT   S+S V + TS+ P E +   S+ S+   
Sbjct: 444 QSTSSEPFETESTGSSSSSE-------MTSEASSSTVTQSTSSEPCETESTGSSSSSE-- 503

Query: 313 PYVHNMTINQSTSDVHEGTSNMPYEADQKASNQSTSDISYVHNMTINQSTSDVPYMLGMT 372
                MT   S+S V + TS+ P E +   S+ S+   S   + T+ QSTS  P+    T
Sbjct: 504 -----MTSEASSSTVTQSTSSEPCETESTGSSSSSEMTSEASSSTVTQSTSSEPFETEST 563

Query: 373 TDQDTSNVPCEVDHIVTNQNTSDDMSYIHNTTIYQSTSGAPCMPEMTINQFTNDVSYLPQ 432
               +S +  E                  ++T+ QSTS  PC  E T +  +++++    
Sbjct: 564 GSSSSSEMTSEAS----------------SSTVTQSTSSEPCETESTGSSSSSEMTSEAS 623

Query: 433 MSTDQGTSGVSHDPNMTINQSTCDVQNMTITQSTN---------GVSNIPEITTNRMEPT 470
            S     + +         + TC+  + T+TQST+         G S+  E+T+     T
Sbjct: 624 SSYCNSINIIRAXXXXXXXEMTCEASSSTVTQSTSSEPCETDSTGSSSSSEMTSEASSST 646

[Close]

BLAST of Lsi08G005660 vs. NCBI nr
Match: gi|659131362|ref|XP_008465646.1| (PREDICTED: NAC domain-containing protein 72-like [Cucumis melo])

HSP 1 Score: 72.4 bits (176), Expect = 2.6e-09
Identity = 60/150 (40.00%), Postives = 77/150 (51.33%), Query Frame = 1


Query: 1   MHEYSLHESMIIHGYSDSNYVLCRIRKNERAKRKTEKICNIQPIKKRVLAPNINEMEKNN 60
           MHEY LH+S + +   D NYVLCRIRKNERAKRK E     QP KKR+ AP I+     N
Sbjct: 143 MHEYRLHQSYLAYQDVDHNYVLCRIRKNERAKRKLEIRELQQPNKKRMTAPKISP----N 202

Query: 61  KRGPTRKANKRQSSSELQLVEPRVVAPNMVYNMPCDPTNQITTNLSYSMLMTTDQDTSNV 120
           KR  T KA +     +LQ +EPR++    +YN    P              TT +D S V
Sbjct: 203 KRLKT-KAKESCLVDQLQPIEPRLMIRETIYNSNIIPDK------------TTCEDISVV 262

Query: 121 PYKAEIARNQSTSDMPYVHNMAINQSTNDV 151
            +   +  NQ   D  Y   MA N  +N++
Sbjct: 263 DHVPNMIANQ---DNVYTPLMATNIESNNL 272

[Close]

BLAST of Lsi08G005660 vs. NCBI nr
Match: gi|761847375|ref|XP_011411451.1| (reverse transcriptase, RNaseH [Metarhizium robertsii ARSEF 23])

HSP 1 Score: 67.0 bits (162), Expect = 1.1e-07
Identity = 77/265 (29.06%), Postives = 113/265 (42.64%), Query Frame = 1


Query: 200 TSNVPYEADQKASNQSTSDMPYVHNMTINQSTSDVHEGTSNVPYEADQKASNQSTSDMPY 259
           TS     ADQ+ ++Q T+D       T +Q T+D            DQK ++Q T+D   
Sbjct: 39  TSTSQKTADQETADQKTTDQKTTDQKTTDQKTTDQKTTDQKT---TDQKTTDQKTTDQKT 98

Query: 260 VHNMTINQSTSDVHEGTSNVPYEADQKASNQSTSDMPYVHNMTINQSTSDVHEGTSNMPY 319
               T +Q T+D            DQK ++Q T+D       T +Q T+D  + T++   
Sbjct: 99  TDQKTTDQKTTDQKT--------TDQKTTDQKTTDQKTTDQKTTDQKTTD--QKTTDQK- 158

Query: 320 EADQKASNQSTSDISYVHNMTINQSTSDVPYMLGMTTDQDTSNVPCEVDHIVTNQNTSDD 379
             DQK ++Q T+D       T +Q T+D       TTDQ T+      D   T+Q T+D 
Sbjct: 159 TTDQKTTDQKTTDQKTTDQKTTDQKTTDQKTTDQKTTDQKTT------DQKTTDQKTTDQ 218

Query: 380 MSYIHNTTIYQSTSGAPCMPEMTINQFTNDVSYLPQMSTDQGTSGVSHDPNMTINQSTCD 439
            +    TT  Q T+      + T +Q T D     Q +TDQ T+        T +Q T D
Sbjct: 219 KTTDQKTT-DQKTTDQKTTDQKTTDQKTTDQKTTDQKTTDQKTTDQKTTDQKTTDQKTTD 278

Query: 440 VQNMTITQSTNGVSNIPEITTNRME 465
              MT  Q T       + TT R +
Sbjct: 279 --QMTTDQKTTDQKTTDQTTTKRRD 280

[Close]

BLAST of Lsi08G005660 vs. NCBI nr
Match: gi|778688961|ref|XP_011652873.1| (PREDICTED: NAC domain-containing protein 102-like [Cucumis sativus])

HSP 1 Score: 64.7 bits (156), Expect = 5.4e-07
Identity = 58/164 (35.37%), Postives = 79/164 (48.17%), Query Frame = 1


Query: 1   MHEYSLHESMIIHGYSDSNYVLCRIRKNERAKRKTEKICNI-QPIKKRVLAPNINEMEKN 60
           MHEY+LH + +  G  D NYVLCRIR+NERA+RK E    + QP KKR+ AP I+  E+ 
Sbjct: 143 MHEYNLHPNYLCEGV-DPNYVLCRIRRNERARRKLEIQGELKQPNKKRIKAPKISRNER- 202

Query: 61  NKRGPTRKANKRQSSSELQLV-EPRVVAPNMVYNMPCD---PTNQITTNLSYSMLMTTDQ 120
                  KA  R+   ELQ + + R +    +YN        T+Q  + + Y   MTT+Q
Sbjct: 203 ------PKAKTRERCDELQPIDDQRAITCETIYNSDIRHDMKTHQDISVVDYLPNMTTNQ 262

Query: 121 DTSNVPYKAEIARNQSTSDMPYVHNMAINQSTNDVPYMLGMSTY 160
           D  N         N S     Y   M  +    D+  +   STY
Sbjct: 263 DNIN--------ENISLGTEDYEPCMLTDDELKDIQTLGEFSTY 290

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BLAST of Lsi08G005660 vs. NCBI nr
Match: gi|449442783|ref|XP_004139160.1| (PREDICTED: NAC domain-containing protein 66-like [Cucumis sativus])

HSP 1 Score: 63.2 bits (152), Expect = 1.6e-06
Identity = 55/164 (33.54%), Postives = 76/164 (46.34%), Query Frame = 1


Query: 1   MHEYSLHESMIIHGYSDSNYVLCRIRKNERAKRKTEKICN--IQPIKKRVLAPNINEMEK 60
           MHEYS+H+  +     DSNYVLCR+RKNER KRK  +I     QP KKR+ AP+I++ E+
Sbjct: 147 MHEYSMHQRYLRCEGVDSNYVLCRMRKNERVKRKLLEIQGEAKQPNKKRIKAPHISDNER 206

Query: 61  NNKRGPTRKANKRQSSSELQLVEPRVVAPNMVYNMPCDP---TNQITTNLSYSMLMTTDQ 120
                            ELQ ++ R      +YN+   P   T+Q  + +     MTT+Q
Sbjct: 207 ---------------CDELQPIDQRATTCETIYNLDIRPDMNTHQDISVVDRVPNMTTNQ 266

Query: 121 DTSNVPYKAEIARNQSTSDMPYVHNMAINQSTNDVPYMLGMSTY 160
           D  N         N S     YV  M  +    D+  +    TY
Sbjct: 267 DNRN--------ENTSLGIEDYVPCMPADDEFKDIRTLDEFCTY 287

The following BLAST results are available for this feature:

BLAST of Lsi08G005660 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi08G005660 vs. TrEMBL


Match Name	E-value	Identity	Description
A8XTG9_CAEBR	1.1e-11	25.30	Protein CBG18512 OS=Caenorhabditis briggsae GN=CBG18512 PE=4 SV=1	[more]
A0A0B2XF53_METRA	7.5e-08	29.06	Reverse transcriptase, RNaseH OS=Metarhizium robertsii (strain ARSEF 23 / ATCC M...	[more]
A0A0A0LFJ5_CUCSA	3.7e-07	35.37	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G838730 PE=4 SV=1	[more]
A0A0A0M0I5_CUCSA	1.1e-06	33.54	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G652300 PE=4 SV=1	[more]
A0A0A0KXM1_CUCSA	1.1e-06	35.58	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G296900 PE=4 SV=1	[more]

BLAST of Lsi08G005660 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi08G005660 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|268554918\|ref\|XP_002635447.1\|	1.6e-11	25.30	Hypothetical protein CBG18512 [Caenorhabditis briggsae]	[more]
gi\|659131362\|ref\|XP_008465646.1\|	2.6e-09	40.00	PREDICTED: NAC domain-containing protein 72-like [Cucumis melo]	[more]
gi\|761847375\|ref\|XP_011411451.1\|	1.1e-07	29.06	reverse transcriptase, RNaseH [Metarhizium robertsii ARSEF 23]	[more]
gi\|778688961\|ref\|XP_011652873.1\|	5.4e-07	35.37	PREDICTED: NAC domain-containing protein 102-like [Cucumis sativus]	[more]
gi\|449442783\|ref\|XP_004139160.1\|	1.6e-06	33.54	PREDICTED: NAC domain-containing protein 66-like [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi08G005660.1	Lsi08G005660.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi08G005660	Cla013806	Watermelon (97103) v1	lsiwmB466
Lsi08G005660	ClCG08G007120	Watermelon (Charleston Gray)	lsiwcgB439
Lsi08G005660	Cla97C08G149820	Watermelon (97103) v2	lsiwmbB445

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi08G005660	Cucurbita moschata (Rifu)	cmolsiB282
Lsi08G005660	Cucurbita moschata (Rifu)	cmolsiB697
Lsi08G005660	Cucurbita pepo (Zucchini)	cpelsiB158
Lsi08G005660	Cucurbita pepo (Zucchini)	cpelsiB382
Lsi08G005660	Wild cucumber (PI 183967)	cpilsiB487
Lsi08G005660	Cucumber (Chinese Long) v2	culsiB478
Lsi08G005660	Melon (DHL92) v3.5.1	lsimeB475
Lsi08G005660	Cucumber (Gy14) v2	cgyblsiB444
Lsi08G005660	Melon (DHL92) v3.6.1	lsimedB494
Lsi08G005660	Silver-seed gourd	carlsiB059
Lsi08G005660	Silver-seed gourd	carlsiB758
Lsi08G005660	Cucumber (Chinese Long) v3	cuclsiB509
Lsi08G005660	Wax gourd	lsiwgoB602
Lsi08G005660	Bottle gourd (USVL1VR-Ls)	lsilsiB122
Lsi08G005660	Cucumber (Gy14) v1	cgylsiB588
Lsi08G005660	Cucurbita maxima (Rimu)	cmalsiB294
Lsi08G005660	Cucurbita maxima (Rimu)	cmalsiB703