Lsi08G002920 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi08G002920
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Cell wall-associated hydrolase
Location	chr08 : 7637662 .. 7637850 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCGAAGAAGAAGAGCAAAGCAAACGAAGCATGCCCAAAAGTAA

mRNA sequence

ATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCGAAGAAGAAGAGCAAAGCAAACGAAGCATGCCCAAAAGTAA

Coding sequence (CDS)

ATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCGAAGAAGAAGAGCAAAGCAAACGAAGCATGCCCAAAAGTAA

Protein sequence

MSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRLRRRRAKQTKHAQK

Homology

[Close]

BLAST of Lsi08G002920 vs. Swiss-Prot
Match: YCX91_PHAAO (Uncharacterized protein ORF91 OS=Phalaenopsis aphrodite subsp. formosana PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.8e-21
Identity = 48/49 (97.96%), Postives = 49/49 (100.00%), Query Frame = 1


Query: 1  MSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRL 50
          MSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTV+VTAAVHRGFGRRL
Sbjct: 10 MSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVLVTAAVHRGFGRRL 58

[Close]

BLAST of Lsi08G002920 vs. TrEMBL
Match: A0A0S3R736_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G442300 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.2e-19
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 1


Query: 1  MSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRL 50
          MSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRL
Sbjct: 1  MSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRL 49

[Close]

BLAST of Lsi08G002920 vs. TrEMBL
Match: A0A151RNA8_CAJCA (Uncharacterized protein ORF91 OS=Cajanus cajan GN=KK1_034567 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.2e-19
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 1


Query: 1   MSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRL 50
           MSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRL
Sbjct: 340 MSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRL 388

[Close]

BLAST of Lsi08G002920 vs. TrEMBL
Match: K4ASX1_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.2e-19
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 1


Query: 1  MSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRL 50
          MSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRL
Sbjct: 1  MSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRL 49

[Close]

BLAST of Lsi08G002920 vs. TrEMBL
Match: A0A072UJ16_MEDTR (Signal anchor, putative OS=Medicago truncatula GN=MTR_4g451295 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.2e-19
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 1


Query: 1   MSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRL 50
           MSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRL
Sbjct: 221 MSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRL 269

[Close]

BLAST of Lsi08G002920 vs. TrEMBL
Match: A0A0V0HWL8_SOLCH (Putative ovule protein (Fragment) OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.2e-19
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 1


Query: 1  MSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRL 50
          MSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRL
Sbjct: 1  MSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRL 49

[Close]

BLAST of Lsi08G002920 vs. NCBI nr
Match: gi|965660006|dbj|BAT76425.1| (hypothetical protein VIGAN_01442300 [Vigna angularis var. angularis])

HSP 1 Score: 103.2 bits (256), Expect = 1.7e-19
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 1


Query: 1  MSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRL 50
          MSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRL
Sbjct: 1  MSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRL 49

[Close]

BLAST of Lsi08G002920 vs. NCBI nr
Match: gi|922367103|ref|XP_013455718.1| (signal anchor, putative [Medicago truncatula])

HSP 1 Score: 103.2 bits (256), Expect = 1.7e-19
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 1


Query: 1   MSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRL 50
           MSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRL
Sbjct: 221 MSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRL 269

[Close]

BLAST of Lsi08G002920 vs. NCBI nr
Match: gi|703131002|ref|XP_010104773.1| (hypothetical protein L484_018826 [Morus notabilis])

HSP 1 Score: 103.2 bits (256), Expect = 1.7e-19
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 1


Query: 1  MSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRL 50
          MSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRL
Sbjct: 1  MSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRL 49

[Close]

BLAST of Lsi08G002920 vs. NCBI nr
Match: gi|1012332556|gb|KYP43983.1| (Uncharacterized protein ORF91 [Cajanus cajan])

HSP 1 Score: 103.2 bits (256), Expect = 1.7e-19
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 1


Query: 1   MSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRL 50
           MSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRL
Sbjct: 340 MSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRL 388

[Close]

BLAST of Lsi08G002920 vs. NCBI nr
Match: gi|78103322|ref|YP_358636.1| (hypothetical protein PhapfoPp090 [Phalaenopsis aphrodite subsp. formosana])

HSP 1 Score: 102.4 bits (254), Expect = 2.8e-19
Identity = 48/49 (97.96%), Postives = 49/49 (100.00%), Query Frame = 1


Query: 1  MSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVIVTAAVHRGFGRRL 50
          MSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTV+VTAAVHRGFGRRL
Sbjct: 10 MSISPSLSPRQCPDRYAFRAGRNLPDKEFRYLRTVLVTAAVHRGFGRRL 58

The following BLAST results are available for this feature:

BLAST of Lsi08G002920 vs. Swiss-Prot


Match Name	E-value	Identity	Description
YCX91_PHAAO	1.8e-21	97.96	Uncharacterized protein ORF91 OS=Phalaenopsis aphrodite subsp. formosana PE=4 SV...	[more]

BLAST of Lsi08G002920 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0S3R736_PHAAN	1.2e-19	100.00	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G442300 PE=...	[more]
A0A151RNA8_CAJCA	1.2e-19	100.00	Uncharacterized protein ORF91 OS=Cajanus cajan GN=KK1_034567 PE=4 SV=1	[more]
K4ASX1_SOLLC	1.2e-19	100.00	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
A0A072UJ16_MEDTR	1.2e-19	100.00	Signal anchor, putative OS=Medicago truncatula GN=MTR_4g451295 PE=4 SV=1	[more]
A0A0V0HWL8_SOLCH	1.2e-19	100.00	Putative ovule protein (Fragment) OS=Solanum chacoense PE=4 SV=1	[more]

BLAST of Lsi08G002920 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi08G002920 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|965660006\|dbj\|BAT76425.1\|	1.7e-19	100.00	hypothetical protein VIGAN_01442300 [Vigna angularis var. angularis]	[more]
gi\|922367103\|ref\|XP_013455718.1\|	1.7e-19	100.00	signal anchor, putative [Medicago truncatula]	[more]
gi\|703131002\|ref\|XP_010104773.1\|	1.7e-19	100.00	hypothetical protein L484_018826 [Morus notabilis]	[more]
gi\|1012332556\|gb\|KYP43983.1\|	1.7e-19	100.00	Uncharacterized protein ORF91 [Cajanus cajan]	[more]
gi\|78103322\|ref\|YP_358636.1\|	2.8e-19	97.96	hypothetical protein PhapfoPp090 [Phalaenopsis aphrodite subsp. formosana]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi08G002920.1	Lsi08G002920.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi08G002920	Silver-seed gourd	carlsiB570
Lsi08G002920	Cucumber (Chinese Long) v3	cuclsiB508
Lsi08G002920	Watermelon (97103) v2	lsiwmbB445
Lsi08G002920	Watermelon (97103) v2	lsiwmbB447
Lsi08G002920	Wax gourd	lsiwgoB599
Lsi08G002920	Wax gourd	lsiwgoB604
Lsi08G002920	Cucumber (Gy14) v1	cgylsiB593
Lsi08G002920	Cucurbita maxima (Rimu)	cmalsiB847
Lsi08G002920	Cucurbita moschata (Rifu)	cmolsiB831
Lsi08G002920	Cucurbita pepo (Zucchini)	cpelsiB278
Lsi08G002920	Cucurbita pepo (Zucchini)	cpelsiB480
Lsi08G002920	Wild cucumber (PI 183967)	cpilsiB484
Lsi08G002920	Cucumber (Chinese Long) v2	culsiB476
Lsi08G002920	Melon (DHL92) v3.5.1	lsimeB472
Lsi08G002920	Watermelon (Charleston Gray)	lsiwcgB439
Lsi08G002920	Watermelon (Charleston Gray)	lsiwcgB446
Lsi08G002920	Watermelon (97103) v1	lsiwmB470
Lsi08G002920	Cucumber (Gy14) v2	cgyblsiB443
Lsi08G002920	Melon (DHL92) v3.6.1	lsimedB492
Lsi08G002920	Silver-seed gourd	carlsiB077