Lsi08G002850 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi08G002850
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionMyb domain protein 52
Locationchr08 : 7199323 .. 7201320 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGGAGTTGCAGGGGACGACACGAAGTCGTTTCCTCGGGGACATTGGCGTCCGGTCGAGGACGAGAAGCTCCGACGGTTAGTTCGGCAGCACGGTGCGCAAAACTGGAATTTCATTGCAGAGAAACTACAAGGAAGATCAGGCATGTCTCTTTTTGTAATAACGTTTGATAATATTTTTTTTTTTTTTTGTGGGTTTTCTTCTCTTCTTTATATTGGAAAAGAAAAACAAAACAAAAAGCGTTTTAATATAATTCTTACTTATTTTGGAATTTTTTTAAAAAAAAAAAGTAATTTTGTTAAGTATTTGAAAATTTGAATTTTTAACATCAAAGGAAGAAGTACATGTCAATTATTGTTGAGCTATAGTCATATTGACTGAAAAGTAGTTTCAGACGAAAAATCTTCAAAACTATTGTGCTAAATTTAGTTTTTGAATCATACATCTTTATACGTGCAACAATGGTGAATAGATCTAATCGAACGTAGTTTAATGGATACGGGATGCAATAACTTCCCTATGACATCTTAATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAGAATGCAATTTATCATGCATTTTATAGATTAGAAATGAAAAAAAAAACAGTATATCAATTTTATAAAATACTCATCTAAAATCGAAAAAATAAAACAAAAAATGAAAATCTTAGGCGTCATGTAGTGACCATTTGATTTTGGTCTTTAATTTTTTTAAAAATTAAACTTAAAACCACTATTTTCACCTCTAAATTTCTTGCTTTATGATTTACTTCCTACCAATGTTTTCAAGAATTAAGCTAAGTTTGGAAAACTAAAAAAATTAAGTAAGTTTTAGGCTCCGTTTGGTAACCATTTCGTTTTTAGTTTTTGGTTTATGAAAATTAAGCTTATTTCCTCACATTTGCTTACAATGATTTGTATCTTTCTTAAGTATAAGAGTTGAAATCTTAGCCAAATTCCAAAAACAAAAATTTTTAAAAACTATTTTTTTTAGTTTTTAAATTTTGGCTTGGTTTTTTAAAACATGTGTAAAAAACATATAAGAAAGCAAGAAATATGGGGTGAGAGGGGTGTTTTTGGGCTTAATTTTCAAAAACTAAAAACCAAAAACTAAATTGTTACCAAACGGGACCTTAATAATTCATTTTTGTTTTTAGAATTTGACTTAGAATTCAACTGTTTTACTTAAAATAGATGAAAACCATCGTAAGAAATTTGGAGAAAATAAACCTAATTTTTAAAAATGAAAAACAAAAAACGAAAATGGTTAATTACCAAACAAATATAGTGGTCTTGATCACTTCTCTTTGGGTTGTTTATCAAAGCTCTTTATTAACTATGATGCTTCTTCTATGGTTTTGAACTGGTTTATTAATAAATTTATAAATTTCATGAAGTTGCATTAATAATTTTGATGATGCAGGGAAGAGTTGCAGATTAAGATGGTTCAATCAACTAGATCCAAGAATAAACAGAAGACCATTCACAGAAGAAGAAGAAGAAAGGCTTTTAGAAGCTCATGAAATTCATGGCAACAAATGGGCATTAATAGCAAGATTGTTTCCTGGAAGAACTGATAATGCTGTAAAGAATCATTGGCATGTAGTTATGGCAAGAAAACAAAGACAACAATCCAATAATCTCTCTACAAGGAAGAAAATTCCAAACAATTATCAACAAATTTTCTTCCATTCCAAATTAATCTGTCCCCCGGCGACGCCCCCGATTGCAAGAGCGAGATCGCACGGCGGCGGTCGCGGTGGCGGAGGATTGTTCGGTAGATTTTGGCAGCCCGAACTTCGAAACCCTAACGACCGGGGTGATTATAACTTTAATTTGTTCTTCAGATGTTATCAAAATTCGTTCCATTCGGGGAATTTTAGACCAAATATTCGATCAAAATCGGCAATTAAGTTTGAGATTTTGAATGAATCGGTTGAGAGGAAGGGTGTTAAGTTCATAGATTTTCTTGGGGTTGAGCAGTGA

mRNA sequence

ATGGACGGAGTTGCAGGGGACGACACGAAGTCGTTTCCTCGGGGACATTGGCGTCCGGTCGAGGACGAGAAGCTCCGACGGTTAGTTCGGCAGCACGGGAAGAGTTGCAGATTAAGATGGTTCAATCAACTAGATCCAAGAATAAACAGAAGACCATTCACAGAAGAAGAAGAAGAAAGGCTTTTAGAAGCTCATGAAATTCATGGCAACAAATGGGCATTAATAGCAAGATTGTTTCCTGGAAGAACTGATAATGCTGTAAAGAATCATTGGCATGTAGTTATGGCAAGAAAACAAAGACAACAATCCAATAATCTCTCTACAAGGAAGAAAATTCCAAACAATTATCAACAAATTTTCTTCCATTCCAAATTAATCTGTCCCCCGGCGACGCCCCCGATTGCAAGAGCGAGATCGCACGGCGGCGGTCGCGGTGGCGGAGGATTGTTCGGTAGATTTTGGCAGCCCGAACTTCGAAACCCTAACGACCGGGGTGATTATAACTTTAATTTGTTCTTCAGATGTTATCAAAATTCGTTCCATTCGGGGAATTTTAGACCAAATATTCGATCAAAATCGGCAATTAAGTTTGAGATTTTGAATGAATCGGTTGAGAGGAAGGGTGTTAAGTTCATAGATTTTCTTGGGGTTGAGCAGTGA

Coding sequence (CDS)

ATGGACGGAGTTGCAGGGGACGACACGAAGTCGTTTCCTCGGGGACATTGGCGTCCGGTCGAGGACGAGAAGCTCCGACGGTTAGTTCGGCAGCACGGGAAGAGTTGCAGATTAAGATGGTTCAATCAACTAGATCCAAGAATAAACAGAAGACCATTCACAGAAGAAGAAGAAGAAAGGCTTTTAGAAGCTCATGAAATTCATGGCAACAAATGGGCATTAATAGCAAGATTGTTTCCTGGAAGAACTGATAATGCTGTAAAGAATCATTGGCATGTAGTTATGGCAAGAAAACAAAGACAACAATCCAATAATCTCTCTACAAGGAAGAAAATTCCAAACAATTATCAACAAATTTTCTTCCATTCCAAATTAATCTGTCCCCCGGCGACGCCCCCGATTGCAAGAGCGAGATCGCACGGCGGCGGTCGCGGTGGCGGAGGATTGTTCGGTAGATTTTGGCAGCCCGAACTTCGAAACCCTAACGACCGGGGTGATTATAACTTTAATTTGTTCTTCAGATGTTATCAAAATTCGTTCCATTCGGGGAATTTTAGACCAAATATTCGATCAAAATCGGCAATTAAGTTTGAGATTTTGAATGAATCGGTTGAGAGGAAGGGTGTTAAGTTCATAGATTTTCTTGGGGTTGAGCAGTGA

Protein sequence

MDGVAGDDTKSFPRGHWRPVEDEKLRRLVRQHGKSCRLRWFNQLDPRINRRPFTEEEEERLLEAHEIHGNKWALIARLFPGRTDNAVKNHWHVVMARKQRQQSNNLSTRKKIPNNYQQIFFHSKLICPPATPPIARARSHGGGRGGGGLFGRFWQPELRNPNDRGDYNFNLFFRCYQNSFHSGNFRPNIRSKSAIKFEILNESVERKGVKFIDFLGVEQ
Homology
[Close]
BLAST of Lsi08G002850 vs. Swiss-Prot
Match: MYB44_ARATH (Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 8.7e-23
Identity = 53/101 (52.48%), Postives = 64/101 (63.37%), Query Frame = 1 

Query: 14  RGHWRPVEDEKLRRLVRQHG----------------KSCRLRWFNQLDPRINRRPFTEEE 73
           +G W P EDE+LRRLV ++G                KSCRLRW NQL P++  RPF+ EE
Sbjct: 6   KGPWSPEEDEQLRRLVVKYGPRNWTVISKSIPGRSGKSCRLRWCNQLSPQVEHRPFSAEE 65

Query: 74  EERLLEAHEIHGNKWALIARLFPGRTDNAVKNHWHVVMARK 99
           +E +  AH   GNKWA IARL  GRTDNAVKNHW+  + RK
Sbjct: 66  DETIARAHAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRK 106

[Close]
BLAST of Lsi08G002850 vs. Swiss-Prot
Match: MYBAA_DICDI (Myb-like protein AA OS=Dictyostelium discoideum GN=mybAA PE=3 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 5.3e-20
Identity = 52/122 (42.62%), Postives = 71/122 (58.20%), Query Frame = 1 

Query: 10  KSFPRGHWRPVEDEKLRRLVRQHG----------------KSCRLRWFNQLDPRINRRPF 69
           +S  +GHW   EDEKLR LV  HG                + CR RW NQLDP I R  +
Sbjct: 753 ESKAKGHWTKEEDEKLRSLVDLHGTKRWKYIASLLCLRNGRQCRERWSNQLDPSIKRDAW 812

Query: 70  TEEEEERLLEAHEIHGNKWALIARLFPGRTDNAVKNHWHVVMARKQRQQSNNLSTRKKIP 116
           T EE+  +L+AH  +GNKWA I++L PGRT+ A+KNHW+  M RK  ++  + S+   I 
Sbjct: 813 TLEEDRIILDAHSKYGNKWAEISKLLPGRTNCAIKNHWNSTMKRKLSKKQYDFSSLPPIS 872

[Close]
BLAST of Lsi08G002850 vs. Swiss-Prot
Match: MYB_XENLA (Transcriptional activator Myb OS=Xenopus laevis GN=myb PE=2 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.0e-18
Identity = 44/105 (41.90%), Postives = 63/105 (60.00%), Query Frame = 1 

Query: 14  RGHWRPVEDEKLRRLVRQHG----------------KSCRLRWFNQLDPRINRRPFTEEE 73
           +G W   ED+++  LV ++G                K CR RW N L+P + +  +TEEE
Sbjct: 89  KGPWTKEEDQRVIELVHKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKSSWTEEE 148

Query: 74  EERLLEAHEIHGNKWALIARLFPGRTDNAVKNHWHVVMARKQRQQ 103
           +  + EAH+  GN+WA IA+L PGRTDNA+KNHW+  M RK+ Q+
Sbjct: 149 DRTIYEAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKEEQE 193

[Close]
BLAST of Lsi08G002850 vs. Swiss-Prot
Match: MYBB_CHICK (Myb-related protein B OS=Gallus gallus GN=MYBL2 PE=1 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.0e-18
Identity = 44/101 (43.56%), Postives = 62/101 (61.39%), Query Frame = 1 

Query: 14  RGHWRPVEDEKLRRLVRQHG----------------KSCRLRWFNQLDPRINRRPFTEEE 73
           +G W   ED+K+  LV+++G                K CR RW N L+P + +  +TEEE
Sbjct: 83  KGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSSWTEEE 142

Query: 74  EERLLEAHEIHGNKWALIARLFPGRTDNAVKNHWHVVMARK 99
           +  + EAH++ GN+WA IA+L PGRTDNAVKNHW+  + RK
Sbjct: 143 DRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRK 183

[Close]
BLAST of Lsi08G002850 vs. Swiss-Prot
Match: MYBB_XENLA (Myb-related protein B OS=Xenopus laevis GN=mybl2 PE=2 SV=2)

HSP 1 Score: 94.7 bits (234), Expect = 1.3e-18
Identity = 44/101 (43.56%), Postives = 62/101 (61.39%), Query Frame = 1 

Query: 14  RGHWRPVEDEKLRRLVRQHG----------------KSCRLRWFNQLDPRINRRPFTEEE 73
           +G W   EDEK+  LV+++G                K CR RW N L+P + +  +TEEE
Sbjct: 83  KGPWTKEEDEKVIELVKKYGTKHWTLIAKQLRGRMGKQCRERWHNHLNPEVKKSSWTEEE 142

Query: 74  EERLLEAHEIHGNKWALIARLFPGRTDNAVKNHWHVVMARK 99
           +  + +AH++ GN+WA IA+L PGRTDNAVKNHW+  + RK
Sbjct: 143 DRIICQAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRK 183

[Close]
BLAST of Lsi08G002850 vs. TrEMBL
Match: A0A0A0LKW9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G229940 PE=4 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 1.3e-78
Identity = 155/201 (77.11%), Postives = 161/201 (80.10%), Query Frame = 1 

Query: 22  DEKLRRLVRQHGKSCRLRWFNQLDPRINRRPFTEEEEERLLEAHEIHGNKWALIARLFPG 81
           DE+        GKSCRLRWFNQLDPRINRRPFTEEEEERLLEAH IHGNKWALIARLFPG
Sbjct: 49  DERFINYFDDVGKSCRLRWFNQLDPRINRRPFTEEEEERLLEAHGIHGNKWALIARLFPG 108

Query: 82  RTDNAVKNHWHVVMARKQRQQS--NNLSTRKKIPNNYQQIFFHSKLICPPATPPIARARS 141
           RTDNAVKNHWHV+MARKQRQQS  NNLSTRKKI N+YQQ   HSKLI  P          
Sbjct: 109 RTDNAVKNHWHVIMARKQRQQSNNNNLSTRKKITNSYQQFVLHSKLISHP---------- 168

Query: 142 HGGGRGGGGLFGRFWQPELRNPNDRGDYNFNLFFR-CYQNSFHSGNFRPNIRSKSAIKFE 201
           HG   G GGLFGRFWQP+LRNPN+R DYN NLF R CYQNSF S +FRPNIRSKS IKFE
Sbjct: 169 HGDSHGRGGLFGRFWQPKLRNPNNRWDYNLNLFLRSCYQNSFRSESFRPNIRSKSTIKFE 228

Query: 202 ILNESVERKGVKFIDFLGVEQ 220
           ILNESVERK  KFIDFLGVEQ
Sbjct: 229 ILNESVERKDAKFIDFLGVEQ 239

[Close]
BLAST of Lsi08G002850 vs. TrEMBL
Match: A0A072V0T7_MEDTR (Myb transcription factor OS=Medicago truncatula GN=MTR_3g089045 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 3.3e-45
Identity = 95/146 (65.07%), Postives = 107/146 (73.29%), Query Frame = 1 

Query: 5   AGDDTKSFPRGHWRPVEDEKLRRLVRQHG----------------KSCRLRWFNQLDPRI 64
           A +DTKS PRGHWRP EDEKLR+LV Q+G                KSCRLRWFNQLDPRI
Sbjct: 7   AAEDTKSCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRI 66

Query: 65  NRRPFTEEEEERLLEAHEIHGNKWALIARLFPGRTDNAVKNHWHVVMARKQRQQSNNLST 124
           NRRPFTEEEEERLL AH IHGNKWALIARLFPGRTDNAVKNHWHV+MARKQR+QS     
Sbjct: 67  NRRPFTEEEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQSKLCGK 126

Query: 125 RKKIPNNYQQIFFHSKLICPPATPPI 135
           R     ++Q++F +S ++  P T  I
Sbjct: 127 R-----SFQEVFSNSSILNFPYTTRI 147

[Close]
BLAST of Lsi08G002850 vs. TrEMBL
Match: K7KUM6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_06G121200 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 3.7e-44
Identity = 89/118 (75.42%), Postives = 95/118 (80.51%), Query Frame = 1 

Query: 2   DGVAGDDTKSFPRGHWRPVEDEKLRRLVRQHG----------------KSCRLRWFNQLD 61
           D  AG+DTK+ PRGHWRP EDEKLR+LV Q+G                KSCRLRWFNQLD
Sbjct: 3   DSSAGEDTKTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLD 62

Query: 62  PRINRRPFTEEEEERLLEAHEIHGNKWALIARLFPGRTDNAVKNHWHVVMARKQRQQS 104
           PRINRRPFTEEEEERLL AH IHGNKWALIARLFPGRTDNAVKNHWHV+MARKQR+QS
Sbjct: 63  PRINRRPFTEEEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQS 120

[Close]
BLAST of Lsi08G002850 vs. TrEMBL
Match: A0A0B2QTM6_GLYSO (Transcription factor MYB44 OS=Glycine soja GN=glysoja_015741 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 3.7e-44
Identity = 89/118 (75.42%), Postives = 95/118 (80.51%), Query Frame = 1 

Query: 2   DGVAGDDTKSFPRGHWRPVEDEKLRRLVRQHG----------------KSCRLRWFNQLD 61
           D  AG+DTK+ PRGHWRP EDEKLR+LV Q+G                KSCRLRWFNQLD
Sbjct: 3   DSSAGEDTKTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLD 62

Query: 62  PRINRRPFTEEEEERLLEAHEIHGNKWALIARLFPGRTDNAVKNHWHVVMARKQRQQS 104
           PRINRRPFTEEEEERLL AH IHGNKWALIARLFPGRTDNAVKNHWHV+MARKQR+QS
Sbjct: 63  PRINRRPFTEEEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQS 120

[Close]
BLAST of Lsi08G002850 vs. TrEMBL
Match: A0A151TS75_CAJCA (Transcription factor MYB44 OS=Cajanus cajan GN=KK1_009111 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 8.1e-44
Identity = 88/118 (74.58%), Postives = 95/118 (80.51%), Query Frame = 1 

Query: 2   DGVAGDDTKSFPRGHWRPVEDEKLRRLVRQHG----------------KSCRLRWFNQLD 61
           D  AG+DTK+ PRGHWRP EDEKL++LV Q+G                KSCRLRWFNQLD
Sbjct: 3   DSSAGEDTKTCPRGHWRPAEDEKLKQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLD 62

Query: 62  PRINRRPFTEEEEERLLEAHEIHGNKWALIARLFPGRTDNAVKNHWHVVMARKQRQQS 104
           PRINRRPFTEEEEERLL AH IHGNKWALIARLFPGRTDNAVKNHWHV+MARKQR+QS
Sbjct: 63  PRINRRPFTEEEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQS 120

[Close]
BLAST of Lsi08G002850 vs. TAIR10
Match: AT1G73410.1 (AT1G73410.1 myb domain protein 54)

HSP 1 Score: 159.1 bits (401), Expect = 3.2e-39
Identity = 75/106 (70.75%), Postives = 82/106 (77.36%), Query Frame = 1 

Query: 14  RGHWRPVEDEKLRRLVRQHG----------------KSCRLRWFNQLDPRINRRPFTEEE 73
           RGHWRP EDEKL+ LV Q+G                KSCRLRWFNQLDPRINR PFTEEE
Sbjct: 6   RGHWRPAEDEKLKDLVEQYGPHNWNAIALKLPGRSGKSCRLRWFNQLDPRINRNPFTEEE 65

Query: 74  EERLLEAHEIHGNKWALIARLFPGRTDNAVKNHWHVVMARKQRQQS 104
           EERLL AH IHGN+W++IARLFPGRTDNAVKNHWHV+MAR+ RQ S
Sbjct: 66  EERLLAAHRIHGNRWSIIARLFPGRTDNAVKNHWHVIMARRTRQTS 111

[Close]
BLAST of Lsi08G002850 vs. TAIR10
Match: AT1G26780.2 (AT1G26780.2 myb domain protein 117)

HSP 1 Score: 157.5 bits (397), Expect = 9.2e-39
Identity = 76/118 (64.41%), Postives = 87/118 (73.73%), Query Frame = 1 

Query: 14  RGHWRPVEDEKLRRLVR----------------QHGKSCRLRWFNQLDPRINRRPFTEEE 73
           RGHWRP ED KL+ LV                 + GKSCRLRWFNQLDPRINRR FTEEE
Sbjct: 98  RGHWRPAEDVKLKELVSIYGPQNWNLIAEKLQGRSGKSCRLRWFNQLDPRINRRAFTEEE 157

Query: 74  EERLLEAHEIHGNKWALIARLFPGRTDNAVKNHWHVVMARKQRQQSNNLSTRKKIPNN 116
           EERL++AH ++GNKWA+IARLFPGRTDN+VKNHWHVVMARK R+ S+    RK + NN
Sbjct: 158 EERLMQAHRLYGNKWAMIARLFPGRTDNSVKNHWHVVMARKYREHSSAYRRRKLMSNN 215

[Close]
BLAST of Lsi08G002850 vs. TAIR10
Match: AT1G69560.1 (AT1G69560.1 myb domain protein 105)

HSP 1 Score: 157.5 bits (397), Expect = 9.2e-39
Identity = 75/116 (64.66%), Postives = 87/116 (75.00%), Query Frame = 1 

Query: 11  SFPRGHWRPVEDEKLRRLVRQHG----------------KSCRLRWFNQLDPRINRRPFT 70
           S  RGHWRP ED KL+ LV  +G                KSCRLRWFNQLDPRINRR FT
Sbjct: 104 SVSRGHWRPAEDTKLKELVAVYGPQNWNLIAEKLQGRSGKSCRLRWFNQLDPRINRRAFT 163

Query: 71  EEEEERLLEAHEIHGNKWALIARLFPGRTDNAVKNHWHVVMARKQRQQSNNLSTRK 111
           EEEEERL++AH ++GNKWA+IARLFPGRTDN+VKNHWHV+MARK R+QS++   RK
Sbjct: 164 EEEEERLMQAHRLYGNKWAMIARLFPGRTDNSVKNHWHVIMARKFREQSSSYRRRK 219

[Close]
BLAST of Lsi08G002850 vs. TAIR10
Match: AT1G17950.1 (AT1G17950.1 myb domain protein 52)

HSP 1 Score: 156.0 bits (393), Expect = 2.7e-38
Identity = 73/106 (68.87%), Postives = 81/106 (76.42%), Query Frame = 1 

Query: 14  RGHWRPVEDEKLRRLVRQHG----------------KSCRLRWFNQLDPRINRRPFTEEE 73
           RGHWRP EDEKLR LV Q G                KSCRLRWFNQLDPRINR PFTEEE
Sbjct: 5   RGHWRPAEDEKLRELVEQFGPHNWNAIAQKLSGRSGKSCRLRWFNQLDPRINRNPFTEEE 64

Query: 74  EERLLEAHEIHGNKWALIARLFPGRTDNAVKNHWHVVMARKQRQQS 104
           EERLL +H IHGN+W++IAR FPGRTDNAVKNHWHV+MAR+ R++S
Sbjct: 65  EERLLASHRIHGNRWSVIARFFPGRTDNAVKNHWHVIMARRGRERS 110

[Close]
BLAST of Lsi08G002850 vs. TAIR10
Match: AT5G17800.1 (AT5G17800.1 myb domain protein 56)

HSP 1 Score: 153.7 bits (387), Expect = 1.3e-37
Identity = 75/117 (64.10%), Postives = 84/117 (71.79%), Query Frame = 1 

Query: 1   MDGVAGDDTKSFPRGHWRPVEDEKLRRLVRQHG----------------KSCRLRWFNQL 60
           M G +G +TK   RGHWRP ED KL+ LV Q G                KSCRLRWFNQL
Sbjct: 80  MRGKSGINTKVCSRGHWRPTEDAKLKELVAQFGPQNWNLISNHLLGRSGKSCRLRWFNQL 139

Query: 61  DPRINRRPFTEEEEERLLEAHEIHGNKWALIARLFPGRTDNAVKNHWHVVMARKQRQ 102
           DPRIN+R FTEEEE RLL AH  +GNKWALI+RLFPGRTDNAVKNHWHV+MAR+ R+
Sbjct: 140 DPRINKRAFTEEEEFRLLAAHRAYGNKWALISRLFPGRTDNAVKNHWHVIMARRTRE 196

[Close]
BLAST of Lsi08G002850 vs. NCBI nr
Match: gi|659090032|ref|XP_008445798.1| (PREDICTED: transcriptional activator Myb-like [Cucumis melo])

HSP 1 Score: 344.0 bits (881), Expect = 2.0e-91
Identity = 177/238 (74.37%), Postives = 186/238 (78.15%), Query Frame = 1 

Query: 1   MDGVAGDDTKSFPRGHWRPVEDEKLRRLVRQHG----------------KSCRLRWFNQL 60
           M GVAGDD KS PRGHWRP EDEKLR+LV+QHG                KSCRLRWFNQL
Sbjct: 1   MAGVAGDDAKSCPRGHWRPAEDEKLRQLVQQHGPQNWNFIAEKLQGRSGKSCRLRWFNQL 60

Query: 61  DPRINRRPFTEEEEERLLEAHEIHGNKWALIARLFPGRTDNAVKNHWHVVMARKQRQQS- 120
           DPRINRRPFTEEEEERLLEAH IHGNKWALIARLFPGRTDNAVKNHWHV+MARKQRQQS 
Sbjct: 61  DPRINRRPFTEEEEERLLEAHGIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQRQQSN 120

Query: 121 -NNLSTRKKIPNNYQQIFFHSKLICPPATPPIARARSHGGGRGGGGLFGRFWQPELRNPN 180
            NNL TRKKI +NYQQ   HSKLI          + SHG G GGG LFGRFWQP++RNPN
Sbjct: 121 NNNLPTRKKITSNYQQFLLHSKLI----------SHSHGDGHGGGELFGRFWQPKIRNPN 180

Query: 181 DRGDYNFNLFFR-CYQNSFHSGNFRPNIRSKSAIKFEILNESVERKGVKFIDFLGVEQ 220
           +R DYN N+F R CYQNSF S NFR NIRSKS IKFEILNESVERK  KFIDFLGVEQ
Sbjct: 181 NRWDYNLNMFLRSCYQNSFRSENFRLNIRSKSTIKFEILNESVERKDAKFIDFLGVEQ 228

[Close]
BLAST of Lsi08G002850 vs. NCBI nr
Match: gi|700206590|gb|KGN61709.1| (hypothetical protein Csa_2G229940 [Cucumis sativus])

HSP 1 Score: 300.8 bits (769), Expect = 1.9e-78
Identity = 155/201 (77.11%), Postives = 161/201 (80.10%), Query Frame = 1 

Query: 22  DEKLRRLVRQHGKSCRLRWFNQLDPRINRRPFTEEEEERLLEAHEIHGNKWALIARLFPG 81
           DE+        GKSCRLRWFNQLDPRINRRPFTEEEEERLLEAH IHGNKWALIARLFPG
Sbjct: 49  DERFINYFDDVGKSCRLRWFNQLDPRINRRPFTEEEEERLLEAHGIHGNKWALIARLFPG 108

Query: 82  RTDNAVKNHWHVVMARKQRQQS--NNLSTRKKIPNNYQQIFFHSKLICPPATPPIARARS 141
           RTDNAVKNHWHV+MARKQRQQS  NNLSTRKKI N+YQQ   HSKLI  P          
Sbjct: 109 RTDNAVKNHWHVIMARKQRQQSNNNNLSTRKKITNSYQQFVLHSKLISHP---------- 168

Query: 142 HGGGRGGGGLFGRFWQPELRNPNDRGDYNFNLFFR-CYQNSFHSGNFRPNIRSKSAIKFE 201
           HG   G GGLFGRFWQP+LRNPN+R DYN NLF R CYQNSF S +FRPNIRSKS IKFE
Sbjct: 169 HGDSHGRGGLFGRFWQPKLRNPNNRWDYNLNLFLRSCYQNSFRSESFRPNIRSKSTIKFE 228

Query: 202 ILNESVERKGVKFIDFLGVEQ 220
           ILNESVERK  KFIDFLGVEQ
Sbjct: 229 ILNESVERKDAKFIDFLGVEQ 239

[Close]
BLAST of Lsi08G002850 vs. NCBI nr
Match: gi|922382279|ref|XP_013461367.1| (myb transcription factor [Medicago truncatula])

HSP 1 Score: 189.9 bits (481), Expect = 4.7e-45
Identity = 95/146 (65.07%), Postives = 107/146 (73.29%), Query Frame = 1 

Query: 5   AGDDTKSFPRGHWRPVEDEKLRRLVRQHG----------------KSCRLRWFNQLDPRI 64
           A +DTKS PRGHWRP EDEKLR+LV Q+G                KSCRLRWFNQLDPRI
Sbjct: 7   AAEDTKSCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRI 66

Query: 65  NRRPFTEEEEERLLEAHEIHGNKWALIARLFPGRTDNAVKNHWHVVMARKQRQQSNNLST 124
           NRRPFTEEEEERLL AH IHGNKWALIARLFPGRTDNAVKNHWHV+MARKQR+QS     
Sbjct: 67  NRRPFTEEEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQSKLCGK 126

Query: 125 RKKIPNNYQQIFFHSKLICPPATPPI 135
           R     ++Q++F +S ++  P T  I
Sbjct: 127 R-----SFQEVFSNSSILNFPYTTRI 147

[Close]
BLAST of Lsi08G002850 vs. NCBI nr
Match: gi|356518595|ref|XP_003527964.1| (PREDICTED: transcription factor LAF1-like [Glycine max])

HSP 1 Score: 186.4 bits (472), Expect = 5.2e-44
Identity = 89/118 (75.42%), Postives = 95/118 (80.51%), Query Frame = 1 

Query: 2   DGVAGDDTKSFPRGHWRPVEDEKLRRLVRQHG----------------KSCRLRWFNQLD 61
           D  AG+DTK+ PRGHWRP EDEKLR+LV Q+G                KSCRLRWFNQLD
Sbjct: 3   DSSAGEDTKTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLD 62

Query: 62  PRINRRPFTEEEEERLLEAHEIHGNKWALIARLFPGRTDNAVKNHWHVVMARKQRQQS 104
           PRINRRPFTEEEEERLL AH IHGNKWALIARLFPGRTDNAVKNHWHV+MARKQR+QS
Sbjct: 63  PRINRRPFTEEEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQS 120

[Close]
BLAST of Lsi08G002850 vs. NCBI nr
Match: gi|1012358720|gb|KYP69904.1| (Transcription factor MYB44 [Cajanus cajan])

HSP 1 Score: 185.3 bits (469), Expect = 1.2e-43
Identity = 88/118 (74.58%), Postives = 95/118 (80.51%), Query Frame = 1 

Query: 2   DGVAGDDTKSFPRGHWRPVEDEKLRRLVRQHG----------------KSCRLRWFNQLD 61
           D  AG+DTK+ PRGHWRP EDEKL++LV Q+G                KSCRLRWFNQLD
Sbjct: 3   DSSAGEDTKTCPRGHWRPAEDEKLKQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLD 62

Query: 62  PRINRRPFTEEEEERLLEAHEIHGNKWALIARLFPGRTDNAVKNHWHVVMARKQRQQS 104
           PRINRRPFTEEEEERLL AH IHGNKWALIARLFPGRTDNAVKNHWHV+MARKQR+QS
Sbjct: 63  PRINRRPFTEEEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQS 120

The following BLAST results are available for this feature:
BLAST of Lsi08G002850 vs. Swiss-Prot
Match NameE-valueIdentityDescription
MYB44_ARATH8.7e-2352.48Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1[more]
MYBAA_DICDI5.3e-2042.62Myb-like protein AA OS=Dictyostelium discoideum GN=mybAA PE=3 SV=1[more]
MYB_XENLA1.0e-1841.90Transcriptional activator Myb OS=Xenopus laevis GN=myb PE=2 SV=1[more]
MYBB_CHICK1.0e-1843.56Myb-related protein B OS=Gallus gallus GN=MYBL2 PE=1 SV=1[more]
MYBB_XENLA1.3e-1843.56Myb-related protein B OS=Xenopus laevis GN=mybl2 PE=2 SV=2[more]
BLAST of Lsi08G002850 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LKW9_CUCSA1.3e-7877.11Uncharacterized protein OS=Cucumis sativus GN=Csa_2G229940 PE=4 SV=1[more]
A0A072V0T7_MEDTR3.3e-4565.07Myb transcription factor OS=Medicago truncatula GN=MTR_3g089045 PE=4 SV=1[more]
K7KUM6_SOYBN3.7e-4475.42Uncharacterized protein OS=Glycine max GN=GLYMA_06G121200 PE=4 SV=1[more]
A0A0B2QTM6_GLYSO3.7e-4475.42Transcription factor MYB44 OS=Glycine soja GN=glysoja_015741 PE=4 SV=1[more]
A0A151TS75_CAJCA8.1e-4474.58Transcription factor MYB44 OS=Cajanus cajan GN=KK1_009111 PE=4 SV=1[more]
BLAST of Lsi08G002850 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G73410.13.2e-3970.75 myb domain protein 54[more]
AT1G26780.29.2e-3964.41 myb domain protein 117[more]
AT1G69560.19.2e-3964.66 myb domain protein 105[more]
AT1G17950.12.7e-3868.87 myb domain protein 52[more]
AT5G17800.11.3e-3764.10 myb domain protein 56[more]
BLAST of Lsi08G002850 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659090032|ref|XP_008445798.1|2.0e-9174.37PREDICTED: transcriptional activator Myb-like [Cucumis melo][more]
gi|700206590|gb|KGN61709.1|1.9e-7877.11hypothetical protein Csa_2G229940 [Cucumis sativus][more]
gi|922382279|ref|XP_013461367.1|4.7e-4565.07myb transcription factor [Medicago truncatula][more]
gi|356518595|ref|XP_003527964.1|5.2e-4475.42PREDICTED: transcription factor LAF1-like [Glycine max][more]
gi|1012358720|gb|KYP69904.1|1.2e-4374.58Transcription factor MYB44 [Cajanus cajan][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR017930Myb_dom
IPR017877Myb-like_dom
IPR009057Homeobox-like_sf
IPR001005SANT/Myb
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:2000652 regulation of secondary cell wall biogenesis
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0000785 chromatin
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003682 chromatin binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi08G002850.1Lsi08G002850.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainPFAMPF00249Myb_DNA-bindingcoord: 50..93
score: 4.8
IPR001005SANT/Myb domainSMARTSM00717santcoord: 49..97
score: 4.0E-17coord: 13..46
score:
IPR009057Homeodomain-likeGENE3DG3DSA:1.10.10.60coord: 10..34
score: 6.4E-5coord: 35..57
score: 2.4E-9coord: 58..93
score: 2.8
IPR009057Homeodomain-likeunknownSSF46689Homeodomain-likecoord: 33..103
score: 2.14
IPR017877Myb-like domainPROFILEPS50090MYB_LIKEcoord: 9..40
score:
IPR017930Myb domainPROFILEPS51294HTH_MYBcoord: 45..99
score: 29
NoneNo IPR availablePANTHERPTHR10641MYB-LIKE DNA-BINDING PROTEIN MYBcoord: 13..102
score: 3.5
NoneNo IPR availablePANTHERPTHR10641:SF496SUBFAMILY NOT NAMEDcoord: 13..102
score: 3.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi08G002850CmaCh09G010740Cucurbita maxima (Rimu)cmalsiB036
Lsi08G002850CmoCh09G010810Cucurbita moschata (Rifu)cmolsiB023
Lsi08G002850MELO3C011698Melon (DHL92) v3.5.1lsimeB472
Lsi08G002850MELO3C011698.2Melon (DHL92) v3.6.1lsimedB492
Lsi08G002850Cla97C08G146960Watermelon (97103) v2lsiwmbB447
Lsi08G002850Bhi04G001698Wax gourdlsiwgoB604
Lsi08G002850Cp4.1LG06g07790Cucurbita pepo (Zucchini)cpelsiB646
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi08G002850Cucurbita maxima (Rimu)cmalsiB458
Lsi08G002850Cucurbita moschata (Rifu)cmolsiB444
Lsi08G002850Cucurbita pepo (Zucchini)cpelsiB480
Lsi08G002850Watermelon (Charleston Gray)lsiwcgB439
Lsi08G002850Watermelon (97103) v1lsiwmB470
Lsi08G002850Silver-seed gourdcarlsiB549
Lsi08G002850Silver-seed gourdcarlsiB570
Lsi08G002850Watermelon (97103) v2lsiwmbB445
Lsi08G002850Wax gourdlsiwgoB599