Lsi08G001840 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi08G001840
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	NAC domain protein,
Location	chr08 : 3971024 .. 3971488 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATAGAGAATCTCAATACCAACTCCGCCAACCCCAACAAAACTACGCTTCCCATCCCACATTTGAGCTCAACAAATCCGACCTAGCCCTACATTACATCCCAACCCCACCCCCACCTTCCCATAATTTCCCCCACCACCACCTCTTTCACCCTAACCTTTCCACCCTCAAGCCCCTCCCCGGCTCGTCCGCCGCCTACGACTACCCGGCCCTCTCGTCCTTGCCACCCGACGCCCCCCTCATGGTCAAACAACTCATGTCTAATAATCCCGAGACCGGCCAACCGACTGACGGTATGGCCGAACCCTGGGCCATGTTGGATCGGCTCGTCACGTCTCATCTTGGGAATGAGGATTCGAATAAGGATGTGAGGTTCGAGGACGAACACGGGTCGTCGTCGGTGAGTCAAATCAATCAGCTTTCGTTGAGAGGAGAGATGGACTTTTGGGGGTACGCTAAATAA

mRNA sequence

ATGCATAGAGAATCTCAATACCAACTCCGCCAACCCCAACAAAACTACGCTTCCCATCCCACATTTGAGCTCAACAAATCCGACCTAGCCCTACATTACATCCCAACCCCACCCCCACCTTCCCATAATTTCCCCCACCACCACCTCTTTCACCCTAACCTTTCCACCCTCAAGCCCCTCCCCGGCTCGTCCGCCGCCTACGACTACCCGGCCCTCTCGTCCTTGCCACCCGACGCCCCCCTCATGGTCAAACAACTCATGTCTAATAATCCCGAGACCGGCCAACCGACTGACGGTATGGCCGAACCCTGGGCCATGTTGGATCGGCTCGTCACGTCTCATCTTGGGAATGAGGATTCGAATAAGGATGTGAGGTTCGAGGACGAACACGGGTCGTCGTCGGTGAGTCAAATCAATCAGCTTTCGTTGAGAGGAGAGATGGACTTTTGGGGGTACGCTAAATAA

Coding sequence (CDS)

ATGCATAGAGAATCTCAATACCAACTCCGCCAACCCCAACAAAACTACGCTTCCCATCCCACATTTGAGCTCAACAAATCCGACCTAGCCCTACATTACATCCCAACCCCACCCCCACCTTCCCATAATTTCCCCCACCACCACCTCTTTCACCCTAACCTTTCCACCCTCAAGCCCCTCCCCGGCTCGTCCGCCGCCTACGACTACCCGGCCCTCTCGTCCTTGCCACCCGACGCCCCCCTCATGGTCAAACAACTCATGTCTAATAATCCCGAGACCGGCCAACCGACTGACGGTATGGCCGAACCCTGGGCCATGTTGGATCGGCTCGTCACGTCTCATCTTGGGAATGAGGATTCGAATAAGGATGTGAGGTTCGAGGACGAACACGGGTCGTCGTCGGTGAGTCAAATCAATCAGCTTTCGTTGAGAGGAGAGATGGACTTTTGGGGGTACGCTAAATAA

Protein sequence

MHRESQYQLRQPQQNYASHPTFELNKSDLALHYIPTPPPPSHNFPHHHLFHPNLSTLKPLPGSSAAYDYPALSSLPPDAPLMVKQLMSNNPETGQPTDGMAEPWAMLDRLVTSHLGNEDSNKDVRFEDEHGSSSVSQINQLSLRGEMDFWGYAK

Homology

[Close]

BLAST of Lsi08G001840 vs. Swiss-Prot
Match: BRN2_ARATH (Protein BEARSKIN2 OS=Arabidopsis thaliana GN=BRN2 PE=2 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.6e-15
Identity = 63/161 (39.13%), Postives = 88/161 (54.66%), Query Frame = 1


Query: 1   MHRESQYQLRQPQQNYASHPTFELNKSDLALHYIPT--PPPPSHNFPHHHLFHPNLSTLK 60
           MHR+S YQL    +N+ +  TFELNK DLALH  P     PPS  F +        S L 
Sbjct: 197 MHRDSPYQL---VRNHGAM-TFELNKPDLALHQYPPIFHKPPSLGFDYS-------SGLA 256

Query: 61  PLPGSSAAYDYPALSSLPPDAPLMVKQLMSNNPETGQPTDGMAEPWAMLDRLVTSHLGNE 120
               S+A+       +  P   +   + ++++        G+ E WAM+DRLVT H+GNE
Sbjct: 257 RDSESAASEGLQYQQACEPGLDVGTCETVASHNHQ----QGLGE-WAMMDRLVTCHMGNE 316

Query: 121 DSNKDVRFEDEHGSSS-----VSQINQLSLRGEMDFWGYAK 155
           DS++ + +ED + +SS     V   NQL+LR EMDFWGY+K
Sbjct: 317 DSSRGITYEDGNNNSSSVVQPVPATNQLTLRSEMDFWGYSK 341

[Close]

BLAST of Lsi08G001840 vs. TrEMBL
Match: A0A0A0KXR9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G646750 PE=4 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 5.9e-73
Identity = 140/156 (89.74%), Postives = 147/156 (94.23%), Query Frame = 1


Query: 1   MHRESQYQLRQPQQNYASHPTFELNKSDLALHYIPTPPPPSHNFPHHHLFHPNLSTLKP- 60
           +HRESQYQLRQPQQNYASHPTFELNKSDLALHYIPTPP PSH FPHHHLFHPNLST+KP 
Sbjct: 210 LHRESQYQLRQPQQNYASHPTFELNKSDLALHYIPTPPQPSH-FPHHHLFHPNLSTIKPG 269

Query: 61  LPGSSAAYDYPALSSLPPDAPLMVKQLMSNNPETGQPTDGMAEPWAMLDRLVTSHLGNED 120
           LP SS+AYDYPALSSLPPD PLM KQLMSNNPET QPTDG+ EPWAMLDRLVTSHLGNE+
Sbjct: 270 LPTSSSAYDYPALSSLPPDTPLMAKQLMSNNPETSQPTDGITEPWAMLDRLVTSHLGNEN 329

Query: 121 SNKDVRFEDEHGSSSVSQINQLSLRGE-MDFWGYAK 155
           S+KDVRF+DEHGSSSVSQINQLSLRGE MDFWGYAK
Sbjct: 330 SSKDVRFDDEHGSSSVSQINQLSLRGEIMDFWGYAK 364

[Close]

BLAST of Lsi08G001840 vs. TrEMBL
Match: A0A151TP57_CAJCA (NAC domain-containing protein 12 OS=Cajanus cajan GN=KK1_022417 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 5.0e-24
Identity = 79/156 (50.64%), Postives = 95/156 (60.90%), Query Frame = 1


Query: 1   MHRESQYQLRQPQQNYASHPTFELNKSDLALHYIPTPPPPSHNFPHHHLFH--PNLSTLK 60
           MHRE+ Y L Q QQN  +    EL+K +LALHY    P   H  P + LF   P L   K
Sbjct: 192 MHRENHYLLHQ-QQNPRNSSGLELDKPELALHY----PHLHHQNPQYSLFQSQPLLQAQK 251

Query: 61  PLPGSSAAYDYPALSSLPPDAPLMVKQLMSNNPETGQPTDGMAEPWAMLDRLVTSHLGNE 120
           P+      YDY   SSLP D P+M KQLM+N P   +  +G+ E W +LDRLVTS LGNE
Sbjct: 252 PM-----VYDYSYASSLPSDTPIMAKQLMTN-PRDCESGEGINE-WGVLDRLVTSQLGNE 311

Query: 121 DSNKDVRFEDEHGSSSVSQINQLSLRGEMDFWGYAK 155
           +SNK VRFE+    ++  QINQLSLRG MDFW Y K
Sbjct: 312 ESNKGVRFEE----ANPHQINQLSLRGGMDFWAYGK 331

[Close]

BLAST of Lsi08G001840 vs. TrEMBL
Match: A0A0R0IIZ5_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_09G233600 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 3.4e-20
Identity = 82/183 (44.81%), Postives = 96/183 (52.46%), Query Frame = 1


Query: 2   HRESQYQLRQPQQNYASHPTFELNKSDLALHYIPTPPPPSHNFPHHHLFH--PNLSTLKP 61
           +RE+ Y L Q QQN  +    EL+K +LALHY    PPP    P + LF   P L T KP
Sbjct: 191 YRENHYLLHQ-QQNPRNSSGLELDKPELALHY----PPPHLQNPPYSLFQSQPLLQTQKP 250

Query: 62  LPGSSAAYDYPALSSLPPDAPLMVKQLMSNNPETGQPTDGM-------------AEP--- 121
           +      YDY    S   D P+M KQLM+N  +    +DG+              EP   
Sbjct: 251 M-----VYDY----SYTSDTPIMAKQLMTNPRDCESGSDGLRYQVSESGMEVGSCEPNQE 310

Query: 122 -----------WAMLDRLVTSHL-GNEDSNKDVRFEDEHGSSSVSQINQLSLRGEMDFWG 155
                      W +LDRLVTSHL GNEDS+K VRFE E    SV QINQLSLRGEMDFW 
Sbjct: 311 MGTGRGEGINEWGVLDRLVTSHLAGNEDSSKGVRFE-EANPQSVHQINQLSLRGEMDFWA 358

[Close]

BLAST of Lsi08G001840 vs. TrEMBL
Match: A0A0B2PVC7_GLYSO (Protein BEARSKIN1 OS=Glycine soja GN=glysoja_006097 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 3.4e-20
Identity = 82/183 (44.81%), Postives = 96/183 (52.46%), Query Frame = 1


Query: 2   HRESQYQLRQPQQNYASHPTFELNKSDLALHYIPTPPPPSHNFPHHHLFH--PNLSTLKP 61
           +RE+ Y L Q QQN  +    EL+K +LALHY    PPP    P + LF   P L T KP
Sbjct: 191 YRENHYLLHQ-QQNPRNSSGLELDKPELALHY----PPPHLQNPPYSLFQSQPLLQTQKP 250

Query: 62  LPGSSAAYDYPALSSLPPDAPLMVKQLMSNNPETGQPTDGM-------------AEP--- 121
           +      YDY    S   D P+M KQLM+N  +    +DG+              EP   
Sbjct: 251 M-----VYDY----SYTSDTPIMAKQLMTNPRDCESGSDGLRYQVSESGMEVGSCEPNQE 310

Query: 122 -----------WAMLDRLVTSHL-GNEDSNKDVRFEDEHGSSSVSQINQLSLRGEMDFWG 155
                      W +LDRLVTSHL GNEDS+K VRFE E    SV QINQLSLRGEMDFW 
Sbjct: 311 MGTGRGEGINEWGVLDRLVTSHLAGNEDSSKGVRFE-EANPQSVHQINQLSLRGEMDFWA 358

[Close]

BLAST of Lsi08G001840 vs. TrEMBL
Match: A0A0L9V9I3_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g213600 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 5.8e-20
Identity = 79/182 (43.41%), Postives = 96/182 (52.75%), Query Frame = 1


Query: 1   MHRESQYQLRQPQQNYASHPTFELNKSDLALHYIPTPPPPSHNFPHHHLFHPN--LSTLK 60
           +HRE+ Y L Q  QN+ + P  EL+K +LALHY      P    P + LF     L T K
Sbjct: 191 IHRENHYLLHQ-HQNHRNSPGLELDKPELALHY------PHLQNPQYSLFQSQNLLQTQK 250

Query: 61  PLPGSSAAYDYPALSSLPPDAPLMVK------------------QLMSNNPETG--QPT- 120
           P+      +DY   SSLP D P+M K                  Q+  +  E G  +P  
Sbjct: 251 PM-----VFDYSYASSLPSDTPVMAKQLMGNPRECESGSEGLRYQVSESGIEVGSCEPNQ 310

Query: 121 -------DGMAEPWAMLDRLVTSHLGNEDSNKDVRFEDEHGSSSVSQINQLSLRGEMDFW 153
                  +G+ E W +LDRLVTSHLGNE+SNK VRFE E    SV QINQLSLRGEMDFW
Sbjct: 311 EVGGGRGEGINE-WGVLDRLVTSHLGNEESNKGVRFE-ETNPQSVHQINQLSLRGEMDFW 358

[Close]

BLAST of Lsi08G001840 vs. TAIR10
Match: AT4G10350.1 (AT4G10350.1 NAC domain containing protein 70)

HSP 1 Score: 82.8 bits (203), Expect = 2.0e-16
Identity = 63/161 (39.13%), Postives = 88/161 (54.66%), Query Frame = 1


Query: 1   MHRESQYQLRQPQQNYASHPTFELNKSDLALHYIPT--PPPPSHNFPHHHLFHPNLSTLK 60
           MHR+S YQL    +N+ +  TFELNK DLALH  P     PPS  F +        S L 
Sbjct: 197 MHRDSPYQL---VRNHGAM-TFELNKPDLALHQYPPIFHKPPSLGFDYS-------SGLA 256

Query: 61  PLPGSSAAYDYPALSSLPPDAPLMVKQLMSNNPETGQPTDGMAEPWAMLDRLVTSHLGNE 120
               S+A+       +  P   +   + ++++        G+ E WAM+DRLVT H+GNE
Sbjct: 257 RDSESAASEGLQYQQACEPGLDVGTCETVASHNHQ----QGLGE-WAMMDRLVTCHMGNE 316

Query: 121 DSNKDVRFEDEHGSSS-----VSQINQLSLRGEMDFWGYAK 155
           DS++ + +ED + +SS     V   NQL+LR EMDFWGY+K
Sbjct: 317 DSSRGITYEDGNNNSSSVVQPVPATNQLTLRSEMDFWGYSK 341

[Close]

BLAST of Lsi08G001840 vs. NCBI nr
Match: gi|659119143|ref|XP_008459499.1| (PREDICTED: protein BEARSKIN1-like [Cucumis melo])

HSP 1 Score: 293.9 bits (751), Expect = 1.6e-76
Identity = 144/155 (92.90%), Postives = 149/155 (96.13%), Query Frame = 1


Query: 1   MHRESQYQLRQPQQNYASHPTFELNKSDLALHYIPTPPPPSHNFPHHHLFHPNLSTLKP- 60
           MHRESQYQLRQPQQNYASHPTFELNKSDLALHYIPTPP PSH FPHHHLFHPNLST+KP 
Sbjct: 206 MHRESQYQLRQPQQNYASHPTFELNKSDLALHYIPTPPQPSH-FPHHHLFHPNLSTIKPG 265

Query: 61  LPGSSAAYDYPALSSLPPDAPLMVKQLMSNNPETGQPTDGMAEPWAMLDRLVTSHLGNED 120
           LPGSS+AYDYPALSS+PPD PLMVKQLMSNNPETGQ TDGM EPWAMLDRLVTSHLGNED
Sbjct: 266 LPGSSSAYDYPALSSMPPDTPLMVKQLMSNNPETGQSTDGMTEPWAMLDRLVTSHLGNED 325

Query: 121 SNKDVRFEDEHGSSSVSQINQLSLRGEMDFWGYAK 155
           S+KDVRF+DEHGSSSVSQINQLSLRGEMDFWGYAK
Sbjct: 326 SSKDVRFDDEHGSSSVSQINQLSLRGEMDFWGYAK 359

[Close]

BLAST of Lsi08G001840 vs. NCBI nr
Match: gi|449447709|ref|XP_004141610.1| (PREDICTED: protein BEARSKIN2-like [Cucumis sativus])

HSP 1 Score: 281.6 bits (719), Expect = 8.4e-73
Identity = 140/156 (89.74%), Postives = 147/156 (94.23%), Query Frame = 1


Query: 1   MHRESQYQLRQPQQNYASHPTFELNKSDLALHYIPTPPPPSHNFPHHHLFHPNLSTLKP- 60
           +HRESQYQLRQPQQNYASHPTFELNKSDLALHYIPTPP PSH FPHHHLFHPNLST+KP 
Sbjct: 210 LHRESQYQLRQPQQNYASHPTFELNKSDLALHYIPTPPQPSH-FPHHHLFHPNLSTIKPG 269

Query: 61  LPGSSAAYDYPALSSLPPDAPLMVKQLMSNNPETGQPTDGMAEPWAMLDRLVTSHLGNED 120
           LP SS+AYDYPALSSLPPD PLM KQLMSNNPET QPTDG+ EPWAMLDRLVTSHLGNE+
Sbjct: 270 LPTSSSAYDYPALSSLPPDTPLMAKQLMSNNPETSQPTDGITEPWAMLDRLVTSHLGNEN 329

Query: 121 SNKDVRFEDEHGSSSVSQINQLSLRGE-MDFWGYAK 155
           S+KDVRF+DEHGSSSVSQINQLSLRGE MDFWGYAK
Sbjct: 330 SSKDVRFDDEHGSSSVSQINQLSLRGEIMDFWGYAK 364

[Close]

BLAST of Lsi08G001840 vs. NCBI nr
Match: gi|1012357591|gb|KYP68776.1| (NAC domain-containing protein 12 [Cajanus cajan])

HSP 1 Score: 119.0 bits (297), Expect = 7.2e-24
Identity = 79/156 (50.64%), Postives = 95/156 (60.90%), Query Frame = 1


Query: 1   MHRESQYQLRQPQQNYASHPTFELNKSDLALHYIPTPPPPSHNFPHHHLFH--PNLSTLK 60
           MHRE+ Y L Q QQN  +    EL+K +LALHY    P   H  P + LF   P L   K
Sbjct: 192 MHRENHYLLHQ-QQNPRNSSGLELDKPELALHY----PHLHHQNPQYSLFQSQPLLQAQK 251

Query: 61  PLPGSSAAYDYPALSSLPPDAPLMVKQLMSNNPETGQPTDGMAEPWAMLDRLVTSHLGNE 120
           P+      YDY   SSLP D P+M KQLM+N P   +  +G+ E W +LDRLVTS LGNE
Sbjct: 252 PM-----VYDYSYASSLPSDTPIMAKQLMTN-PRDCESGEGINE-WGVLDRLVTSQLGNE 311

Query: 121 DSNKDVRFEDEHGSSSVSQINQLSLRGEMDFWGYAK 155
           +SNK VRFE+    ++  QINQLSLRG MDFW Y K
Sbjct: 312 ESNKGVRFEE----ANPHQINQLSLRGGMDFWAYGK 331

[Close]

BLAST of Lsi08G001840 vs. NCBI nr
Match: gi|734348066|gb|KHN11644.1| (Protein BEARSKIN1 [Glycine soja])

HSP 1 Score: 106.3 bits (264), Expect = 4.9e-20
Identity = 82/183 (44.81%), Postives = 96/183 (52.46%), Query Frame = 1


Query: 2   HRESQYQLRQPQQNYASHPTFELNKSDLALHYIPTPPPPSHNFPHHHLFH--PNLSTLKP 61
           +RE+ Y L Q QQN  +    EL+K +LALHY    PPP    P + LF   P L T KP
Sbjct: 191 YRENHYLLHQ-QQNPRNSSGLELDKPELALHY----PPPHLQNPPYSLFQSQPLLQTQKP 250

Query: 62  LPGSSAAYDYPALSSLPPDAPLMVKQLMSNNPETGQPTDGM-------------AEP--- 121
           +      YDY    S   D P+M KQLM+N  +    +DG+              EP   
Sbjct: 251 M-----VYDY----SYTSDTPIMAKQLMTNPRDCESGSDGLRYQVSESGMEVGSCEPNQE 310

Query: 122 -----------WAMLDRLVTSHL-GNEDSNKDVRFEDEHGSSSVSQINQLSLRGEMDFWG 155
                      W +LDRLVTSHL GNEDS+K VRFE E    SV QINQLSLRGEMDFW 
Sbjct: 311 MGTGRGEGINEWGVLDRLVTSHLAGNEDSSKGVRFE-EANPQSVHQINQLSLRGEMDFWA 358

[Close]

BLAST of Lsi08G001840 vs. NCBI nr
Match: gi|356529901|ref|XP_003533525.1| (PREDICTED: protein BEARSKIN2 [Glycine max])

HSP 1 Score: 106.3 bits (264), Expect = 4.9e-20
Identity = 82/183 (44.81%), Postives = 96/183 (52.46%), Query Frame = 1


Query: 2   HRESQYQLRQPQQNYASHPTFELNKSDLALHYIPTPPPPSHNFPHHHLFH--PNLSTLKP 61
           +RE+ Y L Q QQN  +    EL+K +LALHY    PPP    P + LF   P L T KP
Sbjct: 191 YRENHYLLHQ-QQNPRNSSGLELDKPELALHY----PPPHLQNPPYSLFQSQPLLQTQKP 250

Query: 62  LPGSSAAYDYPALSSLPPDAPLMVKQLMSNNPETGQPTDGM-------------AEP--- 121
           +      YDY    S   D P+M KQLM+N  +    +DG+              EP   
Sbjct: 251 M-----VYDY----SYTSDTPIMAKQLMTNPRDCESGSDGLRYQVSESGMEVGSCEPNQE 310

Query: 122 -----------WAMLDRLVTSHL-GNEDSNKDVRFEDEHGSSSVSQINQLSLRGEMDFWG 155
                      W +LDRLVTSHL GNEDS+K VRFE E    SV QINQLSLRGEMDFW 
Sbjct: 311 MGTGRGEGINEWGVLDRLVTSHLAGNEDSSKGVRFE-EANPQSVHQINQLSLRGEMDFWA 358

The following BLAST results are available for this feature:

BLAST of Lsi08G001840 vs. Swiss-Prot


Match Name	E-value	Identity	Description
BRN2_ARATH	3.6e-15	39.13	Protein BEARSKIN2 OS=Arabidopsis thaliana GN=BRN2 PE=2 SV=1	[more]

BLAST of Lsi08G001840 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXR9_CUCSA	5.9e-73	89.74	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G646750 PE=4 SV=1	[more]
A0A151TP57_CAJCA	5.0e-24	50.64	NAC domain-containing protein 12 OS=Cajanus cajan GN=KK1_022417 PE=4 SV=1	[more]
A0A0R0IIZ5_SOYBN	3.4e-20	44.81	Uncharacterized protein OS=Glycine max GN=GLYMA_09G233600 PE=4 SV=1	[more]
A0A0B2PVC7_GLYSO	3.4e-20	44.81	Protein BEARSKIN1 OS=Glycine soja GN=glysoja_006097 PE=4 SV=1	[more]
A0A0L9V9I3_PHAAN	5.8e-20	43.41	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan08g213600 PE=4 SV=1	[more]

BLAST of Lsi08G001840 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G10350.1	2.0e-16	39.13	NAC domain containing protein 70	[more]

BLAST of Lsi08G001840 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659119143\|ref\|XP_008459499.1\|	1.6e-76	92.90	PREDICTED: protein BEARSKIN1-like [Cucumis melo]	[more]
gi\|449447709\|ref\|XP_004141610.1\|	8.4e-73	89.74	PREDICTED: protein BEARSKIN2-like [Cucumis sativus]	[more]
gi\|1012357591\|gb\|KYP68776.1\|	7.2e-24	50.64	NAC domain-containing protein 12 [Cajanus cajan]	[more]
gi\|734348066\|gb\|KHN11644.1\|	4.9e-20	44.81	Protein BEARSKIN1 [Glycine soja]	[more]
gi\|356529901\|ref\|XP_003533525.1\|	4.9e-20	44.81	PREDICTED: protein BEARSKIN2 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0048829	root cap development
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0048829	root cap development
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi08G001840.1	Lsi08G001840.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31989	FAMILY NOT NAMED	coord: 1..152 score: 2.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi08G001840	Csa5G646750	Cucumber (Chinese Long) v2	culsiB391
Lsi08G001840	CSPI05G30290	Wild cucumber (PI 183967)	cpilsiB395
Lsi08G001840	Cucsa.237820	Cucumber (Gy14) v1	cgylsiB389
Lsi08G001840	CmaCh01G008870	Cucurbita maxima (Rimu)	cmalsiB453
Lsi08G001840	CmaCh09G012050	Cucurbita maxima (Rimu)	cmalsiB035
Lsi08G001840	CmoCh01G009320	Cucurbita moschata (Rifu)	cmolsiB440
Lsi08G001840	CmoCh09G012020	Cucurbita moschata (Rifu)	cmolsiB026
Lsi08G001840	Cla012377	Watermelon (97103) v1	lsiwmB467
Lsi08G001840	MELO3C022117	Melon (DHL92) v3.5.1	lsimeB461
Lsi08G001840	ClCG08G001870	Watermelon (Charleston Gray)	lsiwcgB440
Lsi08G001840	CsGy5G029680	Cucumber (Gy14) v2	cgyblsiB358

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi08G001840	Cucumber (Chinese Long) v3	cuclsiB414
Lsi08G001840	Watermelon (97103) v2	lsiwmbB445
Lsi08G001840	Wax gourd	lsiwgoB586
Lsi08G001840	Cucurbita pepo (Zucchini)	cpelsiB479
Lsi08G001840	Cucurbita pepo (Zucchini)	cpelsiB650
Lsi08G001840	Melon (DHL92) v3.6.1	lsimedB479
Lsi08G001840	Silver-seed gourd	carlsiB555