Lsi08G001120 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi08G001120
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Disease resistance protein (TIR-NBS-LRR class), putative
Location	chr08 : 2299449 .. 2304998 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTGGAGAATTGTTCGTCAAAAACTTATTCAAGATCGATTTTGGTGTCACAAAGATATCAAAAATGTGGTAAGATATATGTGTTTGTGTGTGTAGTAAATTTTTAATTAATTAATTTATTTACATATATATTACTACTGATTTAAATCATGTGTGTGCTATTTTATAGTTTCAGGATACAAAAGCACCCATCCAAAGCATAATTTTGAAGTCGACAAGAAATATTGTTGAAATCCCACCAATTCTGTTTTCAAGAATGAACCAACTTGGGCTGATTAATTTTCACAATGTGAGACTTGTTAGAAAAGAAAAAGGTGTGGATGACACAAAGTGGAGAAAGTGATATCTTGATTCAACAAAACATGCCTTTATATAGGCTTACAAACTATAACCATAGAATTTCAATGTTAAGAAATCATAAACAATCTTACTTAATTCTCATAACTTCTAAACTCCCAAAGAGCTCAATGGACACTATTGGTTACAAAAACCAAAAGTCACAAATCAAGTTTAATATTAAAACTTCCATTATTCAAATTAACTTTTCATATTCTCAACACCCCCCTTAAACTTGATTTGTTACACCAAGTAAACTCCTCATTTTGATGAAAGTCTCCCACTTGAGGGGCTTTGTGAAAATGTCCGCTGCTTGGTCTTGTGACTTGACATATTTGAGTTCTACTTCTTTCTTCATAATGCAATCCCGAATGTAATGAAATCGGGTATCAATGTGCTTGCTCCTTCCATGAAATACCGGATTTTTGGCTAAGGCAATGGCTGATTTATTATCAACAAAAATCTCCATTGGATCCTCGATTTGGAACTTCAACTCCTTCAGTAAGTTTCTTAGCCAAATTGCATGACATACACATGAAGTTGCCGCGACGTACTCCGCCTCACATGTTGATAATGTGACTATGGGTTGTTTTTTTGACATTCATGTGAACGCCGTTTCACCAATAAAAAACACAAACCCCATAGTGCTTTTTCGATCATCCAAATCACTACTCCAATCACTATCACAATAACCAACAATATCAAAATTTTTAGAAGAGACATAAGAAAGACCATACCCAATTGTCCCTTTGATATAGCGAAGTATCCTCTTTGCCATTTTACAATGTGTTGTTGTCGGCTCCTCCACAAATCGACTAATAATTCCAACTGAATAAAGAATATCCGGTCTTGTGCATGTCAAGTATCTCAAACTTCCAACCAAGCTTTTGAAATATGTAGAATCTACTTTCTCTCCTCCATTTTGTTTGGTGATTTTGACTCCACATTCCATTGGTGTTCCAACCGGATTAGCATAATCCATATTGAACCTTTTGAGCATTTCTCTAGCATAGCCCTCTTGAGATATAAAAATCCTATATTCACTTTGTTTGACCTCGATCCCAAGATAATAACTCATGAGACCAATGTCCGTCATTTCAAACTCCTTTGTCATCTCCCTTTTAAATTCATCAAAGGGCATGCTCATAAGGACACTTCATATACTTCTTCTCTCTAAAATACTTGTCAATCCTCAAATTCCATGCTCTCGGTGCTTGCTTCAAACCGTAAAGAGCCTTCTTCAATCGAAGTACCTTATCTTCTTCACCCTTGACTTAATAGCCCAATGGTTGTTCCACATAGACCTCTTCCTCAAGAATTCCGTTCAAGAATGTTGATTTGACATCCATTTGATGTATCTTCCAATGATTATGGGCTGCCAAAGCAATAATCAAACGAATAGTTTCAAGGCGAACAATAGGGGCAAATACCTCATCATAGTTGATGCCATGTTGTTGACTATACCCTTTTGCTACTAGTCTCGCTTTGTGCCTCTCAACTTCGCCATTGGCCTTTCTCTTTGTTTTGTAAACCCACTTCACTCCAATTGGTTTTTGTCCTTTTGGAAGCTTGGTCAACTCCCATGTGTTGTTTTTCTCTGTCGGTCGAATTTCTTCATCCATTGCATCCTTCCATTTTTTATTTGCAATGGCTTCTTGGAAATTAATGGGCTCACAATCACCAAAAACACAATAGAAAATTATGTCATTTTGATTTTCGCTTACCTCATTAAGTTCTTGTAGACTTCGGGTTCCTCTTGGGCCAATTTCATTCTCTGAGTCGCTGGAAAGTGCCTCCGTTTCGTTGGATGATGCATTAGATGACTGATCGGTTGATTGAGGTGAAATTGGAATGGCCAAAACTTCACCCCTCTCTCTAGTTGGCTCATCGTCTTCCTCAAAGTATGGAAGAAAACCATACTCCTCCGTCTGTATATTCCAATCCCAAGAAGCTTCTTCATCAAAAACAACATCACGACTAATAGTTACCTTCCCATTCAAAGGATTGTAAAGGTGATAACCCTTTGAGCTTGCATCATAGCCGATGAATATGAGTTTTTCGCTTCGATCGTCAAGCTTGGTCCTTCTTTCCTCCGACACATGAGCATATGCAATACTTCCAAACACCTTGAAGTGACCAATTCCAGGCTTTCTTCCATTCCATGCTTCTTGAGGCGTCTTGTCAAGCACACTTTTGGTTGGTGCTCGATTTGTTAAATAAATCGCACAAGCTACGGCTTCCGCCCAAAATTCCTTAGGCATCTTTTTCGTTTTCAACATGCTTCTTGCCATGTTTAAGATTGTTCGATTCTTCCTCTCCGCCACGCCATTTTGTTGCGGTGTCCTCGGCATTGTTAATGGGCGTTGAATGCCTTTTTTATCACAAAACTGTTTGAACTCATTTGATGTGAATTCACCACCTCGATCTGTTTTCATGGCCTTAATTGTAAGGTTGCTTTCATTCTCCACACGCGCCTTAAATTTCTTGAAGATCTCAAATACTTCCGATTTTTCCTTCAAAAAGTACACCCATGTTTTTCTAGAAAAATCATCAATAAAGAGAAGGAAGTATTTACTTTTACCATGAGACTCCGGTTTGATTGCTCCACACACATCAGCATGGATGAGTTCTAGAGGTTTGTTGGCTCTTGTCATAGACTCCTTTGGAAAACTACTCCGATGATGTTTTCCAAGTAGACACCCTTCACACACTTGGTTCGGCTTCTGAATATGCGGTAAACCCCGCACCATCTTCTTCTTCGACAAGTCTTCTAGACTTCCAAAATTGAGATGCCCGAACCGTAGATGTCATAGCCAAGAAACATCCTCATAACACGTCTTCAAGCATTTCGGAACATCATTACATATATTCAAAGGAAACATTCGGTTTTTTGCCATGATGACTTTAGCAATAAGTCTCTCATGATTATCTCTCAAATACAAACAATTATTTTTCATTTGAACTTCAAAACATTTCTCTAACAATTGTCCTACACTCAATATATTATTTTTTATATTGGGAATGTAATAAACATTTGTAATATATTGATTTTCTCCATTTTTCAACCGAATGAGAATTTTACCTATTCCTTTGATGGCGGCCAAAGAATTGTCTCCAAAGGCAATATTACCTTTTTCCATCTCGTTCAACTCTGCAAACATCTCTCGGTTCCCACACATGTGATTTAAGGCTCCCGTGTCAAGATACCACTTTCTATCTTGACTCTCTTCTTCTTCCTTTGAAACCATGGATAAGGTTCCGTTCTCCTCTGCATAATTGGACTGCCCTTCACGCGCTTTGGATGTGTTAGCGATTGATCGGTCATGTTGCTTCCGATCGATTGACTCTGATTGAGATGAGTAACACTCATTCGCATAATGTCCATATTTATTGCAATTGTAACATTTTACCTGAGATTTATCTCTTCCGGACCTTCCACCACGTCTTCCACGGCCTCAACCTCCTCTTCCTCTTGAGGATTCACTTGAGTTTGGAGAAACATCAGTGTTGGATTCACCTCTTTCACCACGGCCTCTTCCACCACGACCTCTTCCACGTCCACGACTATTCTCCTACTTGAGTTTGAGTTGGAGAAGTTGTTCGATGGTCTCCGATTGCTCCATCTTTCTTTTCTTTTTCTCCTCGTAGGCTTGTAATGAGCCTATAAATTGTTCAATCGTCATGGTCTCGAGATCTTTTGTCTCCTCGATTGTCGTGGCAATGATCTCAAACTTAGTATTTAGGCTCCGTAGAATCTTTTCTATGACACGAACATTGGCGATTTCTTCACCGTTCCGTCTCAATTGGTTGACAATAGTCATAACTTTGGTGTGATATTCCGCTATCACCTCCGTCTCCTTCATCTGTAATGATTCAAACTCAGCACGTAAAGTTTGTAATCGTACCTTTTTAACACGATCAGCTCCTCTATGAGTCGATTGGAGCTTGTCTCATGCTGCCTTTGATGTCTCGGCATCACAAATGGTCTGAAATGTGTCTTCGTCAACTGATTGGTACAAGATATAGAGGGCCTTCTTGTCCTTCTTTCTTGTCTCCTTTAGTGCATCTCTTTGCACTTGATCAGCTCCAGCTTCCGCCTCTTGGAAACCGTTCTGCACAATCTCCCATATGTCTTGTGCTCCTAGTAATGCTTTTATCTTGATGCTCCAACTGTCATAGTTGAGCTTGGTAAGCATCGGCAATTGAATCGAACTCATCCCACCGTTGGTCATTTTCCTCTCAAATTTTACAATGACTCTGTTACCACTTTGTTAGAAAAGAAAAAGGTGTGGATGACACAAATTTGGAGAGAGTGATATCTTGATTCAACAAAGCATGCCTTTATATAGGCTTACAAACTATAACCATAGAATTTCAATGGTTAAGAAATCATAAACAATCTTACTTAATTCTCATAACTTCTAAACTCCCAAAGAGCTCAATGGACACTATTGGTTACAAAAACCAAAAGTCACAAGTCAAGTTTAATATTAAAACTTCCATTATTCAAATTAGCTTTTCATATTCCCAACTGAAAAAGCAGTTGGAATATTGCATAATTCCAAGTGAGTTAAGATATTTGAAGTGGAAAGGATGTCCCTTGAAGTTTTTGCCATTCAGTAGTTGTGAAGAATATGAGCTTATTAAACTTCACATGTGTCATAGCAACTTGAAACAACTTTGGCAAGGAGAAAAGGTACCAATCTGATCTAATTAATTAAATTTATGGTACTGCAGCAATTATCAGCATGCTTTTCATTTTACACATTTTAATTTACATGAACAATTTTGATGCTAAATCTATGCTATATTAAAGTGGGAGAATTTTTAACTTCCCTCTTTATACAGCATTTGGGGAAGTTGAAGTATATCAAACTGAATCATTCGAAGAGGCTGTTGAAAACTCCAGACTTCACACAAATTCCATATCTTGAAAGATTAGAGCTGGAAGGTTGCACAAGTTTAGTCAACATTCATCCATCCATTTTTGTAGCAAAAAGACTCATTTTTCTAAGCTTGAAAGATTGCATCAATCTCACCAAACTTCCATCCCATATTACCATTGAGGTTCTTGAAGTCCTAAATCTCTCAGGTTGTTTGAAGCTAAAAAAACTCCCAGAATTTACAGGCAACAAAGTAGATTATTACAACTCCATTTGGACAACACCTCCATATCATGCCTACACCTTCATCTATTACAACCTTGACTAG

mRNA sequence

ATGGAATATGAGCTTATTAAACTTCACATGTGTCATAGCAACTTGAAACAACTTTGGCAAGGAGAAAAGCATTTGGGGAAGTTGAAGTATATCAAACTGAATCATTCGAAGAGGCTGTTGAAAACTCCAGACTTCACACAAATTCCATATCTTGAAAGATTAGAGCTGGAAGGTTGCACAAGTTTAGTCAACATTCATCCATCCATTTTTGTAGCAAAAAGACTCATTTTTCTAAGCTTGAAAGATTGCATCAATCTCACCAAACTTCCATCCCATATTACCATTGAGGTTCTTGAAGTCCTAAATCTCTCAGGTTGTTTGAAGCTAAAAAAACTCCCAGAATTTACAGGCAACAAAGTAGATTATTACAACTCCATTTGGACAACACCTCCATATCATGCCTACACCTTCATCTATTACAACCTTGACTAG

Coding sequence (CDS)

ATGGAATATGAGCTTATTAAACTTCACATGTGTCATAGCAACTTGAAACAACTTTGGCAAGGAGAAAAGCATTTGGGGAAGTTGAAGTATATCAAACTGAATCATTCGAAGAGGCTGTTGAAAACTCCAGACTTCACACAAATTCCATATCTTGAAAGATTAGAGCTGGAAGGTTGCACAAGTTTAGTCAACATTCATCCATCCATTTTTGTAGCAAAAAGACTCATTTTTCTAAGCTTGAAAGATTGCATCAATCTCACCAAACTTCCATCCCATATTACCATTGAGGTTCTTGAAGTCCTAAATCTCTCAGGTTGTTTGAAGCTAAAAAAACTCCCAGAATTTACAGGCAACAAAGTAGATTATTACAACTCCATTTGGACAACACCTCCATATCATGCCTACACCTTCATCTATTACAACCTTGACTAG

Protein sequence

MEYELIKLHMCHSNLKQLWQGEKHLGKLKYIKLNHSKRLLKTPDFTQIPYLERLELEGCTSLVNIHPSIFVAKRLIFLSLKDCINLTKLPSHITIEVLEVLNLSGCLKLKKLPEFTGNKVDYYNSIWTTPPYHAYTFIYYNLD

Homology

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BLAST of Lsi08G001120 vs. Swiss-Prot
Match: WRK19_ARATH (Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 5.9e-20
Identity = 53/127 (41.73%), Postives = 79/127 (62.20%), Query Frame = 1


Query: 5    LIKLHMCHSNLKQLWQGEK--------HLGKLKYIKLNHSKRLLKTPDFTQIPYLERLEL 64
            L++L++  S  K+LW+G+K         L KLK ++L++S +L K P  +    LE ++L
Sbjct: 1229 LVELNLPSSCAKKLWKGKKARFCTTNSSLEKLKKMRLSYSDQLTKIPRLSSATNLEHIDL 1288

Query: 65   EGCTSLVNIHPSIFVAKRLIFLSLKDCINLTKLPSHITIEVLEVLNLSGCLKLKKLPEFT 124
            EGC SL+++  SI   K+L+FL+LK C  L  +PS + +E LEVLNLSGC KL   PE +
Sbjct: 1289 EGCNSLLSLSQSISYLKKLVFLNLKGCSKLENIPSMVDLESLEVLNLSGCSKLGNFPEIS 1348

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BLAST of Lsi08G001120 vs. Swiss-Prot
Match: TMVRN_NICGU (TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.2e-17
Identity = 48/113 (42.48%), Postives = 69/113 (61.06%), Query Frame = 1


Query: 5   LIKLHMCHSNLKQLWQGEKHLGKLKYIKLNHSKRLLKTPDFTQIPYLERLELEGCTSLVN 64
           L+ L + H++L+ LW   KHL  L+ I L+ SKRL +TPDFT +P LE + L  C++L  
Sbjct: 598 LVHLQLRHNSLRHLWTETKHLPSLRRIDLSWSKRLTRTPDFTGMPNLEYVNLYQCSNLEE 657

Query: 65  IHPSIFVAKRLIFLSLKDCINLTKLPSHITIEVLEVLNLSGCLKLKKLPEFTG 118
           +H S+    ++I L L DC +L + P  + +E LE L L  C  L+KLPE  G
Sbjct: 658 VHHSLGCCSKVIGLYLNDCKSLKRFPC-VNVESLEYLGLRSCDSLEKLPEIYG 709

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BLAST of Lsi08G001120 vs. Swiss-Prot
Match: SNC1_ARATH (Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=4)

HSP 1 Score: 87.8 bits (216), Expect = 1.0e-16
Identity = 46/109 (42.20%), Postives = 65/109 (59.63%), Query Frame = 1


Query: 5   LIKLHMCHSNLKQLWQGEKHLGKLKYIKLNHSKRLLKTPDFTQIPYLERLELEGCTSLVN 64
           L+ L M +S L++LW+G   LG LK + L +S  L + PD +    LE L+L GC SLV 
Sbjct: 601 LVNLIMKYSKLEKLWEGTLPLGSLKEMNLRYSNNLKEIPDLSLAINLEELDLVGCKSLVT 660

Query: 65  IHPSIFVAKRLIFLSLKDCINLTKLPSHITIEVLEVLNLSGCLKLKKLP 114
           +  SI  A +LI+L + DC  L   P+ + +E LE LNL+GC  L+  P
Sbjct: 661 LPSSIQNATKLIYLDMSDCKKLESFPTDLNLESLEYLNLTGCPNLRNFP 709

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BLAST of Lsi08G001120 vs. Swiss-Prot
Match: RPP4_ARATH (Disease resistance protein RPP4 OS=Arabidopsis thaliana GN=RPP4 PE=1 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.8e-16
Identity = 48/109 (44.04%), Postives = 68/109 (62.39%), Query Frame = 1


Query: 5   LIKLHMCHSNLKQLWQGEKHLGKLKYIKLNHSKRLLKTPDFTQIPYLERLELEGCTSLVN 64
           L++L M +S+L++LW G + LG LK + L+ SK L + PD +    LERL L GC SLV 
Sbjct: 746 LVELRMENSDLEKLWDGTQPLGSLKEMYLHGSKYLKEIPDLSLAINLERLYLFGCESLVT 805

Query: 65  IHPSIFVAKRLIFLSLKDCINLTKLPSHITIEVLEVLNLSGCLKLKKLP 114
           +  SI  A +LI L ++DC  L   P+ + +E LE LNL+GC  L+  P
Sbjct: 806 LPSSIQNATKLINLDMRDCKKLESFPTDLNLESLEYLNLTGCPNLRNFP 854

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BLAST of Lsi08G001120 vs. Swiss-Prot
Match: RLM1B_ARATH (Disease resistance protein RML1B OS=Arabidopsis thaliana GN=RLM1B PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.1e-15
Identity = 45/114 (39.47%), Postives = 67/114 (58.77%), Query Frame = 1


Query: 5   LIKLHMCHSNLKQLWQGEKHLGKLKYIKLNHSKRLLKTPDFTQIPYLERLELEGCTSLVN 64
           L++L+M  S L+ LWQG + L  LK + L+ SK L + PD +    LE L L GC SL+ 
Sbjct: 608 LVELNMHSSQLEYLWQGTQPLKNLKKMDLSQSKNLKQLPDLSNATNLEYLYLMGCESLIE 667

Query: 65  IHPSIFVAKRLIFLSLKDCINLTKLPSHITIEVLEVLNLSGCLKLKKLPEFTGN 119
           I  SI    +L  L+   CINL  +P+H+ +E L+ + L GC +L+ +P  + N
Sbjct: 668 IPSSISHLHKLEMLATVGCINLEVIPAHMNLESLQTVYLGGCSRLRNIPVMSTN 721

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BLAST of Lsi08G001120 vs. TrEMBL
Match: A0A0A0KUR8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G648650 PE=3 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 2.2e-42
Identity = 88/117 (75.21%), Postives = 102/117 (87.18%), Query Frame = 1


Query: 2   EYELIKLHMCHSNLKQLWQGEKHLGKLKYIKLNHSKRLLKTPDFTQIPYLERLELEGCTS 61
           E +LI+LHMCHSNLKQ WQ EK+L +LKYIKLN S++L KTP+F  IP L+RLELE CTS
Sbjct: 233 ECKLIELHMCHSNLKQFWQQEKNLVELKYIKLNSSQKLSKTPNFANIPNLKRLELEDCTS 292

Query: 62  LVNIHPSIFVAKRLIFLSLKDCINLTKLPSHITIEVLEVLNLSGCLKLKKLPEFTGN 119
           LVNIHPSIF A++LIFLSLKDCINLT LPSHI I+VLEVL LSGC K+KK+PEF+GN
Sbjct: 293 LVNIHPSIFTAEKLIFLSLKDCINLTNLPSHINIKVLEVLILSGCSKVKKVPEFSGN 349

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BLAST of Lsi08G001120 vs. TrEMBL
Match: M1NJX0_VITLA (TMV resistance protein N-like protein 6 OS=Vitis labrusca PE=2 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.1e-28
Identity = 66/115 (57.39%), Postives = 84/115 (73.04%), Query Frame = 1


Query: 4   ELIKLHMCHSNLKQLWQGEKHLGKLKYIKLNHSKRLLKTPDFTQIPYLERLELEGCTSLV 63
           +L++L+MC S LKQLW+G+K   KLK IKL+HS+ L KTPDF+ +P L RL L+GCTSLV
Sbjct: 624 KLVELNMCFSRLKQLWEGKKGFEKLKSIKLSHSQHLTKTPDFSGVPNLRRLILKGCTSLV 683

Query: 64  NIHPSIFVAKRLIFLSLKDCINLTKLPSHITIEVLEVLNLSGCLKLKKLPEFTGN 119
            +HPSI   K+LIFL+L+ C  L    S I +E L++L LSGC KLKK PE  GN
Sbjct: 684 EVHPSIGALKKLIFLNLEGCKKLKSFSSSIHMESLQILTLSGCSKLKKFPEVQGN 738

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BLAST of Lsi08G001120 vs. TrEMBL
Match: F6I422_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0041g00200 PE=3 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.1e-28
Identity = 66/115 (57.39%), Postives = 84/115 (73.04%), Query Frame = 1


Query: 4   ELIKLHMCHSNLKQLWQGEKHLGKLKYIKLNHSKRLLKTPDFTQIPYLERLELEGCTSLV 63
           +L++L+MC S LKQLW+G+K   KLK IKL+HS+ L KTPDF+ +P L RL L+GCTSLV
Sbjct: 458 KLVELNMCFSRLKQLWEGKKGFEKLKSIKLSHSQHLTKTPDFSGVPNLRRLILKGCTSLV 517

Query: 64  NIHPSIFVAKRLIFLSLKDCINLTKLPSHITIEVLEVLNLSGCLKLKKLPEFTGN 119
            +HPSI   K+LIFL+L+ C  L    S I +E L++L LSGC KLKK PE  GN
Sbjct: 518 EVHPSIGALKKLIFLNLEGCKKLKSFSSSIHMESLQILTLSGCSKLKKFPEVQGN 572

[Close]

BLAST of Lsi08G001120 vs. TrEMBL
Match: U5G6L1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s22430g PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 9.1e-28
Identity = 63/119 (52.94%), Postives = 87/119 (73.11%), Query Frame = 1


Query: 4   ELIKLHMCHSNLKQLWQGEKHLGKLKYIKLNHSKRLLKTPDFTQIPYLERLELEGCTSLV 63
           +L++LHM HS++KQLW+G + L  L+ I L HS+ L+KTPDF Q+P LE+L LEGC  LV
Sbjct: 410 KLVELHMRHSSIKQLWEGVRPLKLLRAIDLRHSRNLIKTPDFRQVPNLEKLNLEGCRKLV 469

Query: 64  NIHPSIFVAKRLIFLSLKDCINLTKLPSHI-TIEVLEVLNLSGCLKLKKLPEFTGNKVD 122
            I  SI + K L+FL+LKDC+ L  LP++I  ++ L +LNL GC KL+KLPE  GN ++
Sbjct: 470 KIDDSIGILKGLVFLNLKDCVKLACLPTNICELKTLRILNLYGCFKLEKLPEMLGNVIN 528

[Close]

BLAST of Lsi08G001120 vs. TrEMBL
Match: F6I1D8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0045g00440 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.6e-27
Identity = 63/115 (54.78%), Postives = 84/115 (73.04%), Query Frame = 1


Query: 4   ELIKLHMCHSNLKQLWQGEKHLGKLKYIKLNHSKRLLKTPDFTQIPYLERLELEGCTSLV 63
           +L++L+MC S L+QLW+G+K   KLK+IKL+HS+ L +TPDF+  P LERL LEGCTS+V
Sbjct: 205 KLVELNMCSSRLEQLWKGDKSFEKLKFIKLSHSQYLTRTPDFSGAPNLERLILEGCTSMV 264

Query: 64  NIHPSIFVAKRLIFLSLKDCINLTKLPSHITIEVLEVLNLSGCLKLKKLPEFTGN 119
            +HPSI   ++LIFL+L+ C NL    S I +  L++L LSGC KLKK PE   N
Sbjct: 265 KVHPSIGALQKLIFLNLEGCKNLKSFASSIHMNSLQILTLSGCSKLKKFPEMLEN 319

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BLAST of Lsi08G001120 vs. TAIR10
Match: AT4G19500.1 (AT4G19500.1 nucleoside-triphosphatases;transmembrane receptors;nucleotide binding;ATP binding)

HSP 1 Score: 102.4 bits (254), Expect = 2.3e-22
Identity = 49/119 (41.18%), Postives = 81/119 (68.07%), Query Frame = 1


Query: 5    LIKLHMCHSNLKQLWQGEKHLGKLKYIKLNHSKRLLKTPDFTQIPYLERLELEGCTSLVN 64
            L++L+M +SN+++LW+G+K+L KLK IKL+HS+ L      ++   LE ++LEGCTSL++
Sbjct: 1147 LVELNMPYSNMEKLWEGKKNLEKLKNIKLSHSRELTDILMLSEALNLEHIDLEGCTSLID 1206

Query: 65   IHPSIFVAKRLIFLSLKDCINLTKLPSHITIEVLEVLNLSGCLKLKKLPEFTGNKVDYY 124
            +  SI    +L+ L++KDC  L  LPS + +  L++LNLSGC + + + +F  N  + Y
Sbjct: 1207 VSMSIPCCGKLVSLNMKDCSRLRSLPSMVDLTTLKLLNLSGCSEFEDIQDFAPNLEEIY 1265

[Close]

BLAST of Lsi08G001120 vs. TAIR10
Match: AT4G12020.2 (AT4G12020.2 protein kinase family protein)

HSP 1 Score: 98.6 bits (244), Expect = 3.3e-21
Identity = 53/127 (41.73%), Postives = 79/127 (62.20%), Query Frame = 1


Query: 5    LIKLHMCHSNLKQLWQGEK--------HLGKLKYIKLNHSKRLLKTPDFTQIPYLERLEL 64
            L++L++  S  K+LW+G+K         L KLK ++L++S +L K P  +    LE ++L
Sbjct: 1229 LVELNLPSSCAKKLWKGKKARFCTTNSSLEKLKKMRLSYSDQLTKIPRLSSATNLEHIDL 1288

Query: 65   EGCTSLVNIHPSIFVAKRLIFLSLKDCINLTKLPSHITIEVLEVLNLSGCLKLKKLPEFT 124
            EGC SL+++  SI   K+L+FL+LK C  L  +PS + +E LEVLNLSGC KL   PE +
Sbjct: 1289 EGCNSLLSLSQSISYLKKLVFLNLKGCSKLENIPSMVDLESLEVLNLSGCSKLGNFPEIS 1348

[Close]

BLAST of Lsi08G001120 vs. TAIR10
Match: AT5G38350.1 (AT5G38350.1 Disease resistance protein (NBS-LRR class) family)

HSP 1 Score: 94.7 bits (234), Expect = 4.8e-20
Identity = 49/117 (41.88%), Postives = 73/117 (62.39%), Query Frame = 1


Query: 5   LIKLHMCHSNLKQLWQGEKHLGKLKYIKLNHSKRLLKTPDFTQIPYLERLELEGCTSLVN 64
           L+++ M +S L+ LWQG + LG LK + L+ SK L + PD +    LE L + GC SLV 
Sbjct: 457 LVEIRMKNSKLQNLWQGNQPLGNLKRMDLSESKHLKELPDLSTATNLEYLIMSGCISLVE 516

Query: 65  IHPSIFVAKRLIFLSLKDCINLTKLPSHITIEVLEVLNLSGCLKLKKLPEFTGNKVD 122
           +  SI   ++L+ LSL+ C  L  LP++I +E L+ L+L+ CL +KK PE + N  D
Sbjct: 517 LPSSIGKLRKLLMLSLRGCSKLEALPTNINLESLDYLDLTDCLLIKKFPEISTNIKD 573

[Close]

BLAST of Lsi08G001120 vs. TAIR10
Match: AT4G12010.1 (AT4G12010.1 Disease resistance protein (TIR-NBS-LRR class) family)

HSP 1 Score: 92.8 bits (229), Expect = 1.8e-19
Identity = 48/114 (42.11%), Postives = 69/114 (60.53%), Query Frame = 1


Query: 5   LIKLHMCHSNLKQLWQGEKHLGKLKYIKLNHSKRLLKTPDFTQIPYLERLELEGCTSLVN 64
           L+ L + HS L+++W  EK +G LK++ L+HS  L +         LERL LEGCTSL  
Sbjct: 622 LVDLKLPHSQLEEIWDDEKDVGMLKWVDLSHSINLRQCLGLANAHNLERLNLEGCTSLKK 681

Query: 65  IHPSIFVAKRLIFLSLKDCINLTKLPSHITIEVLEVLNLSGCLKLKKLPEFTGN 119
           +  +I   ++LI+L+L+DC +L  LP  I  + L+ L LSGC  LKK P  + N
Sbjct: 682 LPSTINCLEKLIYLNLRDCTSLRSLPKGIKTQSLQTLILSGCSSLKKFPLISEN 735

[Close]

BLAST of Lsi08G001120 vs. TAIR10
Match: AT5G49140.1 (AT5G49140.1 Disease resistance protein (TIR-NBS-LRR class) family)

HSP 1 Score: 90.9 bits (224), Expect = 6.9e-19
Identity = 48/114 (42.11%), Postives = 68/114 (59.65%), Query Frame = 1


Query: 5   LIKLHMCHSNLKQLWQGEKHLGKLKYIKLNHSKRLLKTPDFTQIPYLERLELEGCTSLVN 64
           L++L M HS + +LW+G + L  LK I L+ S  L++ PD ++   LE L LEGC SL  
Sbjct: 610 LVELRMMHSKVVKLWEGTQTLAYLKTIDLSFSNNLVEVPDLSKAISLETLCLEGCQSLAE 669

Query: 65  IHPSIFVAKRLIFLSLKDCINLTKLPSHITIEVLEVLNLSGCLKLKKLPEFTGN 119
           +  S+    RL +L L  C  L  +P HI +  LEVL++ GCLKLK  P+ + N
Sbjct: 670 LPSSVLNLHRLKWLRLTMCEKLEVIPLHINLASLEVLDMEGCLKLKSFPDISKN 723

[Close]

BLAST of Lsi08G001120 vs. NCBI nr
Match: gi|778707836|ref|XP_011656070.1| (PREDICTED: TMV resistance protein N-like isoform X1 [Cucumis sativus])

HSP 1 Score: 179.9 bits (455), Expect = 3.2e-42
Identity = 88/117 (75.21%), Postives = 102/117 (87.18%), Query Frame = 1


Query: 2   EYELIKLHMCHSNLKQLWQGEKHLGKLKYIKLNHSKRLLKTPDFTQIPYLERLELEGCTS 61
           E +LI+LHMCHSNLKQ WQ EK+L +LKYIKLN S++L KTP+F  IP L+RLELE CTS
Sbjct: 611 ECKLIELHMCHSNLKQFWQQEKNLVELKYIKLNSSQKLSKTPNFANIPNLKRLELEDCTS 670

Query: 62  LVNIHPSIFVAKRLIFLSLKDCINLTKLPSHITIEVLEVLNLSGCLKLKKLPEFTGN 119
           LVNIHPSIF A++LIFLSLKDCINLT LPSHI I+VLEVL LSGC K+KK+PEF+GN
Sbjct: 671 LVNIHPSIFTAEKLIFLSLKDCINLTNLPSHINIKVLEVLILSGCSKVKKVPEFSGN 727

[Close]

BLAST of Lsi08G001120 vs. NCBI nr
Match: gi|700197467|gb|KGN52644.1| (hypothetical protein Csa_5G648650 [Cucumis sativus])

HSP 1 Score: 179.9 bits (455), Expect = 3.2e-42
Identity = 88/117 (75.21%), Postives = 102/117 (87.18%), Query Frame = 1


Query: 2   EYELIKLHMCHSNLKQLWQGEKHLGKLKYIKLNHSKRLLKTPDFTQIPYLERLELEGCTS 61
           E +LI+LHMCHSNLKQ WQ EK+L +LKYIKLN S++L KTP+F  IP L+RLELE CTS
Sbjct: 233 ECKLIELHMCHSNLKQFWQQEKNLVELKYIKLNSSQKLSKTPNFANIPNLKRLELEDCTS 292

Query: 62  LVNIHPSIFVAKRLIFLSLKDCINLTKLPSHITIEVLEVLNLSGCLKLKKLPEFTGN 119
           LVNIHPSIF A++LIFLSLKDCINLT LPSHI I+VLEVL LSGC K+KK+PEF+GN
Sbjct: 293 LVNIHPSIFTAEKLIFLSLKDCINLTNLPSHINIKVLEVLILSGCSKVKKVPEFSGN 349

[Close]

BLAST of Lsi08G001120 vs. NCBI nr
Match: gi|659119242|ref|XP_008459550.1| (PREDICTED: TMV resistance protein N-like [Cucumis melo])

HSP 1 Score: 174.5 bits (441), Expect = 1.3e-40
Identity = 86/117 (73.50%), Postives = 100/117 (85.47%), Query Frame = 1


Query: 2   EYELIKLHMCHSNLKQLWQGEKHLGKLKYIKLNHSKRLLKTPDFTQIPYLERLELEGCTS 61
           E +LI+LHMCHSNLKQ WQ EK+L  LKYIKLN S++L KTP+F  IP L+RLELE CTS
Sbjct: 605 ECKLIELHMCHSNLKQFWQQEKNLVGLKYIKLNSSQKLSKTPNFANIPNLKRLELEDCTS 664

Query: 62  LVNIHPSIFVAKRLIFLSLKDCINLTKLPSHITIEVLEVLNLSGCLKLKKLPEFTGN 119
           LVNIHPSIF A++LIFL+LKDCINLT LPS I I+VLEVL LSGC K+KK+PEF+GN
Sbjct: 665 LVNIHPSIFTAEKLIFLNLKDCINLTNLPSRINIKVLEVLILSGCSKVKKVPEFSGN 721

[Close]

BLAST of Lsi08G001120 vs. NCBI nr
Match: gi|731431397|ref|XP_010665418.1| (PREDICTED: TMV resistance protein N-like [Vitis vinifera])

HSP 1 Score: 134.4 bits (337), Expect = 1.5e-28
Identity = 66/115 (57.39%), Postives = 84/115 (73.04%), Query Frame = 1


Query: 4   ELIKLHMCHSNLKQLWQGEKHLGKLKYIKLNHSKRLLKTPDFTQIPYLERLELEGCTSLV 63
           +L++L+MC S LKQLW+G+K   KLK IKL+HS+ L KTPDF+ +P L RL L+GCTSLV
Sbjct: 624 KLVELNMCFSRLKQLWEGKKGFEKLKSIKLSHSQHLTKTPDFSGVPNLRRLILKGCTSLV 683

Query: 64  NIHPSIFVAKRLIFLSLKDCINLTKLPSHITIEVLEVLNLSGCLKLKKLPEFTGN 119
            +HPSI   K+LIFL+L+ C  L    S I +E L++L LSGC KLKK PE  GN
Sbjct: 684 EVHPSIGALKKLIFLNLEGCKKLKSFSSSIHMESLQILTLSGCSKLKKFPEVQGN 738

[Close]

BLAST of Lsi08G001120 vs. NCBI nr
Match: gi|645251908|ref|XP_008231886.1| (PREDICTED: TMV resistance protein N-like isoform X1 [Prunus mume])

HSP 1 Score: 134.0 bits (336), Expect = 2.0e-28
Identity = 65/115 (56.52%), Postives = 84/115 (73.04%), Query Frame = 1


Query: 4   ELIKLHMCHSNLKQLWQGEKHLGKLKYIKLNHSKRLLKTPDFTQIPYLERLELEGCTSLV 63
           +L++L MCHS ++QLW G K   KLK IKL+HSK L  TP+F ++  LERL+LEGC SLV
Sbjct: 644 KLVELSMCHSRIEQLWSGIKDFDKLKVIKLSHSKSLTSTPNFEEVQNLERLDLEGCESLV 703

Query: 64  NIHPSIFVAKRLIFLSLKDCINLTKLPSHITIEVLEVLNLSGCLKLKKLPEFTGN 119
            I  SI V K+LIFL+LKDC +L  LP  I +E LE+L LSGC  +K++PEF G+
Sbjct: 704 EIDSSIRVLKKLIFLNLKDCKSLESLPGEIAMEYLEILILSGCSNVKRIPEFVGH 758

The following BLAST results are available for this feature:

BLAST of Lsi08G001120 vs. Swiss-Prot


Match Name	E-value	Identity	Description
WRK19_ARATH	5.9e-20	41.73	Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=...	[more]
TMVRN_NICGU	1.2e-17	42.48	TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1	[more]
SNC1_ARATH	1.0e-16	42.20	Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=...	[more]
RPP4_ARATH	1.8e-16	44.04	Disease resistance protein RPP4 OS=Arabidopsis thaliana GN=RPP4 PE=1 SV=1	[more]
RLM1B_ARATH	1.1e-15	39.47	Disease resistance protein RML1B OS=Arabidopsis thaliana GN=RLM1B PE=2 SV=1	[more]

BLAST of Lsi08G001120 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KUR8_CUCSA	2.2e-42	75.21	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G648650 PE=3 SV=1	[more]
M1NJX0_VITLA	1.1e-28	57.39	TMV resistance protein N-like protein 6 OS=Vitis labrusca PE=2 SV=1	[more]
F6I422_VITVI	1.1e-28	57.39	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0041g00200 PE=3 SV=...	[more]
U5G6L1_POPTR	9.1e-28	52.94	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s22430g PE=3 SV=1	[more]
F6I1D8_VITVI	1.6e-27	54.78	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0045g00440 PE=4 SV=...	[more]

BLAST of Lsi08G001120 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G19500.1	2.3e-22	41.18	nucleoside-triphosphatases;transmembrane receptors;nucleotide bindin...	[more]
AT4G12020.2	3.3e-21	41.73	protein kinase family protein	[more]
AT5G38350.1	4.8e-20	41.88	Disease resistance protein (NBS-LRR class) family	[more]
AT4G12010.1	1.8e-19	42.11	Disease resistance protein (TIR-NBS-LRR class) family	[more]
AT5G49140.1	6.9e-19	42.11	Disease resistance protein (TIR-NBS-LRR class) family	[more]

BLAST of Lsi08G001120 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778707836\|ref\|XP_011656070.1\|	3.2e-42	75.21	PREDICTED: TMV resistance protein N-like isoform X1 [Cucumis sativus]	[more]
gi\|700197467\|gb\|KGN52644.1\|	3.2e-42	75.21	hypothetical protein Csa_5G648650 [Cucumis sativus]	[more]
gi\|659119242\|ref\|XP_008459550.1\|	1.3e-40	73.50	PREDICTED: TMV resistance protein N-like [Cucumis melo]	[more]
gi\|731431397\|ref\|XP_010665418.1\|	1.5e-28	57.39	PREDICTED: TMV resistance protein N-like [Vitis vinifera]	[more]
gi\|645251908\|ref\|XP_008231886.1\|	2.0e-28	56.52	PREDICTED: TMV resistance protein N-like isoform X1 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR011713	Leu-rich_rpt_3

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response
biological_process	GO:0008150	biological_process
biological_process	GO:0007165	signal transduction
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0043531	ADP binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:1901363	heterocyclic compound binding
molecular_function	GO:0097159	organic cyclic compound binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi08G001120.1	Lsi08G001120.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011713	Leucine-rich repeat 3	PFAM	PF07725	LRR_3	coord: 5..23 score: 1.
None	No IPR available	PANTHER	PTHR11017	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	coord: 4..115 score: 2.5
None	No IPR available	PANTHER	PTHR11017:SF174	SUBFAMILY NOT NAMED	coord: 4..115 score: 2.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi08G001120	CmoCh09G012600	Cucurbita moschata (Rifu)	cmolsiB025
Lsi08G001120	CmoCh01G009120	Cucurbita moschata (Rifu)	cmolsiB440
Lsi08G001120	ClCG08G001180	Watermelon (Charleston Gray)	lsiwcgB442
Lsi08G001120	Bhi06G000152	Wax gourd	lsiwgoB585
Lsi08G001120	Bhi06G000178	Wax gourd	lsiwgoB590

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi08G001120	Cucumber (Gy14) v1	cgylsiB389
Lsi08G001120	Cucurbita maxima (Rimu)	cmalsiB038
Lsi08G001120	Cucurbita maxima (Rimu)	cmalsiB453
Lsi08G001120	Cucurbita pepo (Zucchini)	cpelsiB479
Lsi08G001120	Cucurbita pepo (Zucchini)	cpelsiB650
Lsi08G001120	Wild cucumber (PI 183967)	cpilsiB395
Lsi08G001120	Cucumber (Chinese Long) v2	culsiB391
Lsi08G001120	Cucumber (Chinese Long) v2	culsiB392
Lsi08G001120	Melon (DHL92) v3.5.1	lsimeB461
Lsi08G001120	Watermelon (Charleston Gray)	lsiwcgB440
Lsi08G001120	Watermelon (97103) v1	lsiwmB467
Lsi08G001120	Watermelon (97103) v1	lsiwmB473
Lsi08G001120	Cucumber (Gy14) v2	cgyblsiB357
Lsi08G001120	Cucumber (Gy14) v2	cgyblsiB358
Lsi08G001120	Melon (DHL92) v3.6.1	lsimedB479
Lsi08G001120	Melon (DHL92) v3.6.1	lsimedB480
Lsi08G001120	Silver-seed gourd	carlsiB147
Lsi08G001120	Cucumber (Chinese Long) v3	cuclsiB414
Lsi08G001120	Cucumber (Chinese Long) v3	cuclsiB415
Lsi08G001120	Watermelon (97103) v2	lsiwmbB445
Lsi08G001120	Wax gourd	lsiwgoB586