Lsi08G001060 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi08G001060
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr08 : 2204649 .. 2205954 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATATGCGAAAGGGAAGACCAAGACCACCAAAATCAAATATAGTGTTGTGAGATTTCCACATGTATTACAGGTATGTTAATTATAATCATCATGGGTTGGCCTAGTGGTAGTGGGAACATAAAAAAAAGCCAAAGGGTTAAGAGGTCATATGGGTTCAATCCATGGTGGCCACCTACCTAGGATTTAATATCTTACTGATTTTCTTGACACCCAAATATTGTGGGGTCAAGCGGGTCCGGACACTCATGGATATAAAAAAAACATGTTAATTATACTACCTAATATTTGTATATTCAAACTTTCAAAAAATGAATTGTTTTATTATTATGTATAATAGGTTTTGGCATATGAATCCATATCAACCATAAAGGGTTGTGTTGCAAACAAAATAAATGACAATGTCATCCTGCGCATGCTTAGATGGTCTTGTGATCAATCACCCTCGTCTCAGTTTATACATGGCCAAGTTTTTTACTCAACTAAGGTATACAAATATTACTATTTATATTAATTCATTAAGTTTCTTGTATTTAAATCTCTTGTATTTACCTTATCTTTTTTATCTAGTTGGAAATTAAAGTGCTTCTTGAGATGACACAAGATGAGAAGATCACCATGAACAAAACTATGAGTGGAACTCCCTCCTCTGAGTTTGATGATATCATTAAGGGTGAAAAGTCTCCACCTCACACAAATACTATAATTTCGGGTGGTACTCCCTTCGTTAATGATAACTTACCAAGCGAAGTCAAAATGAAGCAGAAAAACAAGTCAAAATAAAAAATGAAAGAGGTTATTAAGAACCTGTAGGATCGTGTCGTATTGGTTGAGAACGAACATAAGGAATTAAAGTCTAGTATGTCAGAAATGAAGTTGATGCTATCGGCCATATTTAAACAACTTGGAGTAGAAGAACAGGTATGCGATTCTTACAAACGCTTTGTGCTAAACATTATTATTAGGTCTACTAAATCAAGTTGATAATATGCAGGTAAAGAAAGAAACATTGCAGAGTTTGACGATTTGGTAAAGGATGAAATGTATAAGAATGAAATGCAGATTTGGACAAAGCGAGCACATATTGGATGAAGATGTCAAAGGAAGATCATAGTGGAGTTCAAAATCGGGTGGATCAACCAATAAATGTCTTGGATAGTGAAGTTCAAAATAAGGTGGATCAGCCAATAAATGTCTTGGATAGTGAAGTTCAAAATAAGGTGGATCAACCAATAAATGTCTTGGATAGTGAAGTTCAAAATGAGGTGGATCAACCAATAAATGTCTTGGATAATGAAGTTTAA

mRNA sequence

ATGAAATATGCGAAAGGGAAGACCAAGACCACCAAAATCAAATATAGTGTTGTGAGATTTCCACATGTATTACAGGTTTTGGCATATGAATCCATATCAACCATAAAGGGTTGTGTTGCAAACAAAATAAATGACAATGTCATCCTGCGCATGCTTAGATGGTCTTGTGATCAATCACCCTCGTCTCAGTTTATACATGGCCAAGTTTTTTACTCAACTAAGTTGGAAATTAAAGTGCTTCTTGAGATGACACAAGATGAGAAGATCACCATGAACAAAACTATGAGTGGAACTCCCTCCTCTGAGTTTGATGATATCATTAAGGGTGAAAAGTCTCCACCTCACACAAATACTATAATTTCGGGTGATTTGGACAAAGCGAGCACATATTGGATGAAGATGTCAAAGGAAGATCATAGTGGAGTTCAAAATCGGGTGGATCAACCAATAAATGTCTTGGATAGTGAAGTTCAAAATAAGGTGGATCAGCCAATAAATGTCTTGGATAGTGAAGTTCAAAATAAGGTGGATCAACCAATAAATGTCTTGGATAGTGAAGTTCAAAATGAGGTGGATCAACCAATAAATGTCTTGGATAATGAAGTTTAA

Coding sequence (CDS)

ATGAAATATGCGAAAGGGAAGACCAAGACCACCAAAATCAAATATAGTGTTGTGAGATTTCCACATGTATTACAGGTTTTGGCATATGAATCCATATCAACCATAAAGGGTTGTGTTGCAAACAAAATAAATGACAATGTCATCCTGCGCATGCTTAGATGGTCTTGTGATCAATCACCCTCGTCTCAGTTTATACATGGCCAAGTTTTTTACTCAACTAAGTTGGAAATTAAAGTGCTTCTTGAGATGACACAAGATGAGAAGATCACCATGAACAAAACTATGAGTGGAACTCCCTCCTCTGAGTTTGATGATATCATTAAGGGTGAAAAGTCTCCACCTCACACAAATACTATAATTTCGGGTGATTTGGACAAAGCGAGCACATATTGGATGAAGATGTCAAAGGAAGATCATAGTGGAGTTCAAAATCGGGTGGATCAACCAATAAATGTCTTGGATAGTGAAGTTCAAAATAAGGTGGATCAGCCAATAAATGTCTTGGATAGTGAAGTTCAAAATAAGGTGGATCAACCAATAAATGTCTTGGATAGTGAAGTTCAAAATGAGGTGGATCAACCAATAAATGTCTTGGATAATGAAGTTTAA

Protein sequence

MKYAKGKTKTTKIKYSVVRFPHVLQVLAYESISTIKGCVANKINDNVILRMLRWSCDQSPSSQFIHGQVFYSTKLEIKVLLEMTQDEKITMNKTMSGTPSSEFDDIIKGEKSPPHTNTIISGDLDKASTYWMKMSKEDHSGVQNRVDQPINVLDSEVQNKVDQPINVLDSEVQNKVDQPINVLDSEVQNEVDQPINVLDNEV
Homology
[Close]
BLAST of Lsi08G001060 vs. TrEMBL
Match: A0A0A0KM59_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G141180 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 6.6e-08
Identity = 33/80 (41.25%), Postives = 46/80 (57.50%), Query Frame = 1 

Query: 9   KTTKIKYSVVRFPHVLQVLAYESISTIKGCVANKINDNVILRMLRWSCDQSPSSQFIHGQ 68
           K   +KYS+  FPH  QV AYE IS+I G    ++N+  + R+LRWSC  S  S+ +   
Sbjct: 224 KNYNVKYSLPGFPHAFQVWAYEIISSIAGKAVTRLNNEAVPRILRWSCSYSLPSKLLQRD 283

Query: 69  VFYSTKLEIKVLLEMTQDEK 89
           VF S ++ I   L M+  EK
Sbjct: 284 VFNSMRIVISPTLIMSDAEK 303

[Close]
BLAST of Lsi08G001060 vs. NCBI nr
Match: gi|778688738|ref|XP_004148595.2| (PREDICTED: uncharacterized protein LOC101207436 [Cucumis sativus])

HSP 1 Score: 99.8 bits (247), Expect = 6.0e-18
Identity = 70/176 (39.77%), Postives = 95/176 (53.98%), Query Frame = 1 

Query: 1   MKYAKGKTKTTKIKYSVVRFPHVLQVLAYESISTIKGCVANKINDNVILRMLRWSCDQSP 60
           M+Y KGK K  K KY+++ FPH LQV AYESISTI GC   KIND+VI RMLRW C QS 
Sbjct: 214 MQYVKGK-KVFKKKYTILGFPHALQVWAYESISTIIGCGVEKINDDVIPRMLRWVCQQSS 273

Query: 61  SSQFIHGQVFYSTKLEIKVLLEMTQDE---KITMNKTMSGTPSSEFDDIIKGEKSPPHTN 120
            S  I  QVF S  L IK ++EMT +E   +I+ ++      SS    +  G        
Sbjct: 274 KSYTIQSQVFDSPMLIIKAVIEMTPEEEQLRISSSELFDKLHSSNIVHMKNGGSKRGREV 333

Query: 121 TIISGDLDKASTYWMKMS-KEDHSGVQNR---VDQPINVLDSEVQNKVDQPINVLD 170
           +   GDL K+    +K   KE    +++R   V+  I  L S+++       N+L+
Sbjct: 334 SNDGGDLKKSKKQKLKSKMKEVIRNLEDRVTVVESQITSLKSDIEELKGMMFNILE 388

[Close]
BLAST of Lsi08G001060 vs. NCBI nr
Match: gi|778688678|ref|XP_011652810.1| (PREDICTED: uncharacterized protein LOC105435109 [Cucumis sativus])

HSP 1 Score: 89.0 bits (219), Expect = 1.1e-14
Identity = 44/88 (50.00%), Postives = 60/88 (68.18%), Query Frame = 1 

Query: 1   MKYAKGKTKTTKIKYSVVRFPHVLQVLAYESISTIKGCVANKINDNVILRMLRWSCDQSP 60
           M++AKGK K+TK KY+V+ FP  LQV AYESI TI  C  +K++++ I RMLRW C+ SP
Sbjct: 49  MQHAKGKNKSTKTKYTVMGFPQALQVWAYESIPTITECGVHKVSNDAIPRMLRWVCELSP 108

Query: 61  SSQFIHGQVFYSTKLEIKVLLEMTQDEK 89
            S  +  QVF S    I V++EM  +E+
Sbjct: 109 KSHVLQRQVFDSPMFLINVVIEMMPEEE 136

[Close]
BLAST of Lsi08G001060 vs. NCBI nr
Match: gi|700194767|gb|KGN49944.1| (hypothetical protein Csa_5G141180 [Cucumis sativus])

HSP 1 Score: 65.9 bits (159), Expect = 9.5e-08
Identity = 33/80 (41.25%), Postives = 46/80 (57.50%), Query Frame = 1 

Query: 9   KTTKIKYSVVRFPHVLQVLAYESISTIKGCVANKINDNVILRMLRWSCDQSPSSQFIHGQ 68
           K   +KYS+  FPH  QV AYE IS+I G    ++N+  + R+LRWSC  S  S+ +   
Sbjct: 224 KNYNVKYSLPGFPHAFQVWAYEIISSIAGKAVTRLNNEAVPRILRWSCSYSLPSKLLQRD 283

Query: 69  VFYSTKLEIKVLLEMTQDEK 89
           VF S ++ I   L M+  EK
Sbjct: 284 VFNSMRIVISPTLIMSDAEK 303

[Close]
BLAST of Lsi08G001060 vs. NCBI nr
Match: gi|778699094|ref|XP_011654657.1| (PREDICTED: uncharacterized protein LOC105435430 isoform X2 [Cucumis sativus])

HSP 1 Score: 65.9 bits (159), Expect = 9.5e-08
Identity = 33/80 (41.25%), Postives = 46/80 (57.50%), Query Frame = 1 

Query: 9   KTTKIKYSVVRFPHVLQVLAYESISTIKGCVANKINDNVILRMLRWSCDQSPSSQFIHGQ 68
           K   +KYS+  FPH  QV AYE IS+I G    ++N+  + R+LRWSC  S  S+ +   
Sbjct: 305 KNYNVKYSLPGFPHAFQVWAYEIISSIAGKAVTRLNNEAVPRILRWSCSYSLPSKLLQRD 364

Query: 69  VFYSTKLEIKVLLEMTQDEK 89
           VF S ++ I   L M+  EK
Sbjct: 365 VFNSMRIVISPTLIMSDAEK 384

[Close]
BLAST of Lsi08G001060 vs. NCBI nr
Match: gi|778699090|ref|XP_011654656.1| (PREDICTED: uncharacterized protein LOC105435430 isoform X1 [Cucumis sativus])

HSP 1 Score: 65.9 bits (159), Expect = 9.5e-08
Identity = 33/80 (41.25%), Postives = 46/80 (57.50%), Query Frame = 1 

Query: 9   KTTKIKYSVVRFPHVLQVLAYESISTIKGCVANKINDNVILRMLRWSCDQSPSSQFIHGQ 68
           K   +KYS+  FPH  QV AYE IS+I G    ++N+  + R+LRWSC  S  S+ +   
Sbjct: 307 KNYNVKYSLPGFPHAFQVWAYEIISSIAGKAVTRLNNEAVPRILRWSCSYSLPSKLLQRD 366

Query: 69  VFYSTKLEIKVLLEMTQDEK 89
           VF S ++ I   L M+  EK
Sbjct: 367 VFNSMRIVISPTLIMSDAEK 386

The following BLAST results are available for this feature:
BLAST of Lsi08G001060 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi08G001060 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KM59_CUCSA6.6e-0841.25Uncharacterized protein OS=Cucumis sativus GN=Csa_5G141180 PE=4 SV=1[more]
BLAST of Lsi08G001060 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi08G001060 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778688738|ref|XP_004148595.2|6.0e-1839.77PREDICTED: uncharacterized protein LOC101207436 [Cucumis sativus][more]
gi|778688678|ref|XP_011652810.1|1.1e-1450.00PREDICTED: uncharacterized protein LOC105435109 [Cucumis sativus][more]
gi|700194767|gb|KGN49944.1|9.5e-0841.25hypothetical protein Csa_5G141180 [Cucumis sativus][more]
gi|778699094|ref|XP_011654657.1|9.5e-0841.25PREDICTED: uncharacterized protein LOC105435430 isoform X2 [Cucumis sativus][more]
gi|778699090|ref|XP_011654656.1|9.5e-0841.25PREDICTED: uncharacterized protein LOC105435430 isoform X1 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi08G001060.1Lsi08G001060.1mRNA