Lsi08G000770 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi08G000770
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionEthylene-responsive transcription factor 4
Locationchr08 : 1652979 .. 1653455 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCCCAATTATAGAGGCGTTCGTAAGCGCAAATGGGGAAAATGGGTCTCCGAAATCCGCGAACCGGGTAAAAAAACCCGAATCTGGCTCGGCAGTTACCATCTCCCGGAAATGGCCGCCGCCGCCTACGACGTCGCCGCCCTCCACCTCCGCGGCCCTGACGCTCACCTCAACTTCCCCGAGCTGGCTGACTCCTTCCCTCGCCCTGCCAGCTCCTCCCCTGACCACATTCAGGCCGCCGCCCACATGGCTGCATTGCGGGTCGCCAACACTAAGCCGCCTGACCCTCCGGCGCCGGTTCGCGTGGGGCTGTCCCCTAGCCAGATTCAGGCCATTAATGAGTCGCCGTTGGATTCTCCGACCATGTGGATGCAGATGGCGGCGGAGGCGCTTTCTTTACAGCCTCATGATTGGGACGAGGAATATAACAACATGCACAATCATCATTCCATTTGGGATTATTCTTCAATCTAA

mRNA sequence

ATGGATCCCAATTATAGAGGCGTTCGTAAGCGCAAATGGGGAAAATGGGTCTCCGAAATCCGCGAACCGGGTAAAAAAACCCGAATCTGGCTCGGCAGTTACCATCTCCCGGAAATGGCCGCCGCCGCCTACGACGTCGCCGCCCTCCACCTCCGCGGCCCTGACGCTCACCTCAACTTCCCCGAGCTGGCTGACTCCTTCCCTCGCCCTGCCAGCTCCTCCCCTGACCACATTCAGGCCGCCGCCCACATGGCTGCATTGCGGGTCGCCAACACTAAGCCGCCTGACCCTCCGGCGCCGGTTCGCGTGGGGCTGTCCCCTAGCCAGATTCAGGCCATTAATGAGTCGCCGTTGGATTCTCCGACCATGTGGATGCAGATGGCGGCGGAGGCGCTTTCTTTACAGCCTCATGATTGGGACGAGGAATATAACAACATGCACAATCATCATTCCATTTGGGATTATTCTTCAATCTAA

Coding sequence (CDS)

ATGGATCCCAATTATAGAGGCGTTCGTAAGCGCAAATGGGGAAAATGGGTCTCCGAAATCCGCGAACCGGGTAAAAAAACCCGAATCTGGCTCGGCAGTTACCATCTCCCGGAAATGGCCGCCGCCGCCTACGACGTCGCCGCCCTCCACCTCCGCGGCCCTGACGCTCACCTCAACTTCCCCGAGCTGGCTGACTCCTTCCCTCGCCCTGCCAGCTCCTCCCCTGACCACATTCAGGCCGCCGCCCACATGGCTGCATTGCGGGTCGCCAACACTAAGCCGCCTGACCCTCCGGCGCCGGTTCGCGTGGGGCTGTCCCCTAGCCAGATTCAGGCCATTAATGAGTCGCCGTTGGATTCTCCGACCATGTGGATGCAGATGGCGGCGGAGGCGCTTTCTTTACAGCCTCATGATTGGGACGAGGAATATAACAACATGCACAATCATCATTCCATTTGGGATTATTCTTCAATCTAA

Protein sequence

MDPNYRGVRKRKWGKWVSEIREPGKKTRIWLGSYHLPEMAAAAYDVAALHLRGPDAHLNFPELADSFPRPASSSPDHIQAAAHMAALRVANTKPPDPPAPVRVGLSPSQIQAINESPLDSPTMWMQMAAEALSLQPHDWDEEYNNMHNHHSIWDYSSI
Homology
[Close]
BLAST of Lsi08G000770 vs. Swiss-Prot
Match: ERF22_ARATH (Ethylene-responsive transcription factor ERF022 OS=Arabidopsis thaliana GN=ERF022 PE=2 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 4.6e-42
Identity = 96/153 (62.75%), Postives = 106/153 (69.28%), Query Frame = 1 

Query: 4   NYRGVRKRKWGKWVSEIREPGKKTRIWLGSYHLPEMAAAAYDVAALHLRGPDAHLNFPEL 63
           +YRG+R+RKWGKWVSEIREPGKKTRIWLGSY   EMAAAAYD AALHLRG   +LNFPEL
Sbjct: 19  SYRGIRRRKWGKWVSEIREPGKKTRIWLGSYETAEMAAAAYDAAALHLRGRGTNLNFPEL 78

Query: 64  ADSFPRPASSSPDHIQAAAHMAALRVANTKPPDPPAP-----VRVGLSPSQIQAINESPL 123
            DSFPRP SSS +HIQAAA  AAL     +  +P         RVGLSP QIQAINESPL
Sbjct: 79  VDSFPRPESSSSEHIQAAAQDAALMFKPGRLSEPALESGQGLSRVGLSPDQIQAINESPL 138

Query: 124 DSPTM-WMQMAAEALSLQPHDWDEEYNNMHNHH 151
           DSP M WMQ       L+  D++E Y      H
Sbjct: 139 DSPRMGWMQ------DLEVADYEELYGQFFGQH 165

[Close]
BLAST of Lsi08G000770 vs. Swiss-Prot
Match: ERF21_ARATH (Ethylene-responsive transcription factor ERF021 OS=Arabidopsis thaliana GN=ERF021 PE=2 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 9.3e-35
Identity = 86/162 (53.09%), Postives = 96/162 (59.26%), Query Frame = 1 

Query: 5   YRGVRKRKWGKWVSEIREPGKKTRIWLGSYHLPEMAAAAYDVAALHLRGPDAHLNFPELA 64
           YRGVRKRKWGKWVSEIREPG K RIWLGS+  PEMAA AYDVAA H RG +A LNFPELA
Sbjct: 24  YRGVRKRKWGKWVSEIREPGTKNRIWLGSFETPEMAATAYDVAAFHFRGREARLNFPELA 83

Query: 65  DSFPRPASSSPDHIQAAAHMAAL----------RVANTKPPDPPAPVRVGLSPSQIQAIN 124
            S PRPA SS D I+ A H A L             ++      AP  V LSP +IQAIN
Sbjct: 84  SSLPRPADSSSDSIRMAVHEATLCRTTEGTESAMQVDSSSSSNVAPTMVRLSPREIQAIN 143

Query: 125 ESPLDSPTMWMQMAAEALSLQPHDWDEEYNNMHNHHS--IWD 155
           ES L SPT  M    + +       D E N    + S  +WD
Sbjct: 144 ESTLGSPTTMMHSTYDPMEFAN---DVEMNAWETYQSDFLWD 182

[Close]
BLAST of Lsi08G000770 vs. Swiss-Prot
Match: ERF38_ARATH (Ethylene-responsive transcription factor ERF038 OS=Arabidopsis thaliana GN=ERF038 PE=2 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 2.9e-28
Identity = 69/130 (53.08%), Postives = 85/130 (65.38%), Query Frame = 1 

Query: 3   PNYRGVRKRKWGKWVSEIREPGKKTRIWLGSYHLPEMAAAAYDVAALHLRGPDAHLNFPE 62
           PN+RGVR R+WGKWVSEIREP KK+RIWLG++   EMAA A+DVAAL ++G  AHLNFPE
Sbjct: 43  PNFRGVRMRQWGKWVSEIREPKKKSRIWLGTFSTAEMAARAHDVAALAIKGGSAHLNFPE 102

Query: 63  LADSFPRPASSSPDHIQAAAHMAALRVA-----NTKPPDPPAPVRVGLSPSQIQAINESP 122
           LA   PRPAS+ P  IQAAA  AA  VA      T  P P   V    SP+ I   +++ 
Sbjct: 103 LAYHLPRPASADPKDIQAAAAAAAAAVAIDMDVETSSPSPSPTVTETSSPAMIALSDDAF 162

Query: 123 LDSPTMWMQM 128
            D P + + +
Sbjct: 163 SDLPDLLLNV 172

[Close]
BLAST of Lsi08G000770 vs. Swiss-Prot
Match: ERF37_ARATH (Ethylene-responsive transcription factor ERF037 OS=Arabidopsis thaliana GN=ERF037 PE=2 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 4.2e-27
Identity = 71/140 (50.71%), Postives = 82/140 (58.57%), Query Frame = 1 

Query: 2   DPNYRGVRKRKWGKWVSEIREPGKKTRIWLGSYHLPEMAAAAYDVAALHLRGPDAHLNFP 61
           DP YRGVR R WGKWVSEIREP KK+RIWLG++  PEMAA A+D AAL ++G  A LNFP
Sbjct: 40  DPGYRGVRMRTWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDAAALTIKGTSAVLNFP 99

Query: 62  ELADSFPRPASSSPDHIQAAAHMAAL--------RVANTKPPDPPAPVRVGLSPSQIQAI 121
           ELA   PRPASSSP  +QAAA +AA          +  + P    AP    LS S     
Sbjct: 100 ELATYLPRPASSSPRDVQAAAAVAAAMDFSPSSSSLVVSDPTTVIAPAETQLSSSSYSTC 159

Query: 122 NESPLDSPTMWMQMAAEALS 134
             S L   +      AE LS
Sbjct: 160 TSSSLSPSSEEAASTAEELS 179

[Close]
BLAST of Lsi08G000770 vs. Swiss-Prot
Match: ERF39_ARATH (Ethylene-responsive transcription factor ERF039 OS=Arabidopsis thaliana GN=ERF039 PE=2 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 5.5e-27
Identity = 66/115 (57.39%), Postives = 80/115 (69.57%), Query Frame = 1 

Query: 3   PNYRGVRKRKWGKWVSEIREPGKKTRIWLGSYHLPEMAAAAYDVAALHLRGPDAHLNFPE 62
           PN+RGVR R+WGKWVSEIREP KK+RIWLG++  PEMAA A+DVAAL ++G  AHLNFPE
Sbjct: 38  PNFRGVRMRQWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALAIKGGSAHLNFPE 97

Query: 63  LADSFPRPASSSPDHIQAAAHMAALRVANTKPPDPPAPVRVGLSPSQIQAINESP 118
           LA   PRPAS+ P  IQ AA  AA    + K P+ P+   V  SP    A ++ P
Sbjct: 98  LAYHLPRPASADPKDIQEAA--AAAAAVDWKAPESPSST-VTSSPVADDAFSDLP 149

[Close]
BLAST of Lsi08G000770 vs. TrEMBL
Match: A0A0A0KUT8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G649870 PE=4 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 2.4e-74
Identity = 143/163 (87.73%), Postives = 150/163 (92.02%), Query Frame = 1 

Query: 1   MDPNYRGVRKRKWGKWVSEIREPGKKTRIWLGSYHLPEMAAAAYDVAALHLRGPDAHLNF 60
           MDPNYRGVRKRKWGKWVSEIREPGKKTRIWLGSYHLPEMAAAAYDVAALHLRGPDA LNF
Sbjct: 1   MDPNYRGVRKRKWGKWVSEIREPGKKTRIWLGSYHLPEMAAAAYDVAALHLRGPDARLNF 60

Query: 61  PELADSFPRPASSSPDHIQAAAHMAALRVANTKPPDP-PAPVRVGLSPSQIQAINESPLD 120
           P+LADSFPRPASSSPDHIQAAAHMAALR ANTKPP+P PAPVRVGLS SQIQAINESPLD
Sbjct: 61  PDLADSFPRPASSSPDHIQAAAHMAALRFANTKPPEPAPAPVRVGLSASQIQAINESPLD 120

Query: 121 SPTMWMQMAAEALSLQPHDWDEE-----YNNMHNH--HSIWDY 156
           SPTMWMQMAAEALSL+ H+WD++     YNNM +H  HSIWDY
Sbjct: 121 SPTMWMQMAAEALSLEGHEWDDDEEYNYYNNMQHHHDHSIWDY 163

[Close]
BLAST of Lsi08G000770 vs. TrEMBL
Match: A9PL88_POPTR (TINY-like protein OS=Populus trichocarpa GN=TINYL19 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 6.9e-45
Identity = 104/174 (59.77%), Postives = 119/174 (68.39%), Query Frame = 1 

Query: 3   PNYRGVRKRKWGKWVSEIREPGKKTRIWLGSYHLPEMAAAAYDVAALHLRGPDAHLNFPE 62
           P YRGVR+RKWGKWVSEIREPGKKTRIWLGSY +PEMAAAAYDVAALHLRG  A LNFPE
Sbjct: 15  PRYRGVRQRKWGKWVSEIREPGKKTRIWLGSYEMPEMAAAAYDVAALHLRGRGAQLNFPE 74

Query: 63  LADSFPRPASSSPDHIQAAAHMAALRV------------ANTKPPDPPAPVRVGLSPSQI 122
           + DS PRPASSS + +Q AA  AAL              +++       PVRVGLSPSQI
Sbjct: 75  MVDSLPRPASSSTEDVQMAAQEAALLFRRPIKCSEGVGGSSSGGGGSLGPVRVGLSPSQI 134

Query: 123 QAINESPLDSPTMWMQMAAEALSLQP--------HDWDEEYNNM-HNHHSIWDY 156
           QAINE+PLDSP MWM++A   L  +P         +  +E+  M H H SIWDY
Sbjct: 135 QAINEAPLDSPKMWMELAGALLLDEPVAMGDDIDVELSDEWGEMEHEHDSIWDY 188

[Close]
BLAST of Lsi08G000770 vs. TrEMBL
Match: U5FUY3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s10330g PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 6.9e-45
Identity = 104/174 (59.77%), Postives = 119/174 (68.39%), Query Frame = 1 

Query: 3   PNYRGVRKRKWGKWVSEIREPGKKTRIWLGSYHLPEMAAAAYDVAALHLRGPDAHLNFPE 62
           P YRGVR+RKWGKWVSEIREPGKKTRIWLGSY +PEMAAAAYDVAALHLRG  A LNFPE
Sbjct: 15  PRYRGVRQRKWGKWVSEIREPGKKTRIWLGSYEMPEMAAAAYDVAALHLRGRGAQLNFPE 74

Query: 63  LADSFPRPASSSPDHIQAAAHMAALRV------------ANTKPPDPPAPVRVGLSPSQI 122
           + DS PRPASSS + +Q AA  AAL              +++       PVRVGLSPSQI
Sbjct: 75  MVDSLPRPASSSTEDVQMAAQEAALLFRRPIKCSEGVSGSSSGGGGSLGPVRVGLSPSQI 134

Query: 123 QAINESPLDSPTMWMQMAAEALSLQP--------HDWDEEYNNM-HNHHSIWDY 156
           QAINE+PLDSP MWM++A   L  +P         +  +E+  M H H SIWDY
Sbjct: 135 QAINEAPLDSPKMWMELAGALLLDEPVAMGDDIDVELSDEWGEMEHEHDSIWDY 188

[Close]
BLAST of Lsi08G000770 vs. TrEMBL
Match: M1BJ67_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400018054 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 9.1e-45
Identity = 101/166 (60.84%), Postives = 116/166 (69.88%), Query Frame = 1 

Query: 5   YRGVRKRKWGKWVSEIREPGKKTRIWLGSYHLPEMAAAAYDVAALHLRG--PDAHLNFPE 64
           YRGVRKRKWGKWVSEIREPGKKTRIWLGSY   EMAAAAYDVAA HL+G  P+  LNFPE
Sbjct: 14  YRGVRKRKWGKWVSEIREPGKKTRIWLGSYETAEMAAAAYDVAAFHLKGERPNLRLNFPE 73

Query: 65  LADSFPRPASSSPDHIQAAAHMAALRVANTKPPDP----PAPVRVGLSPSQIQAINESPL 124
           L  +FP+P+SS P+ +Q AAH AA+R        P      PVRVGLSPSQIQAINESPL
Sbjct: 74  LIHTFPKPSSSRPEDVQMAAHEAAMRFKRPIDDHPDNCGAGPVRVGLSPSQIQAINESPL 133

Query: 125 DSPTMWMQMA---------AEALSLQPHDWDEEYNNMHNHHSIWDY 156
           DSP MWM++A           + S + H WDE     ++H SIWD+
Sbjct: 134 DSPKMWMELAGLLPVREYTCPSSSFEDHQWDE---IQYHHDSIWDF 176

[Close]
BLAST of Lsi08G000770 vs. TrEMBL
Match: W6FTF6_9ROSA (Dehydration responsive element binding transcription factor OS=Morus notabilis GN=DREB4B PE=2 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.2e-44
Identity = 102/159 (64.15%), Postives = 112/159 (70.44%), Query Frame = 1 

Query: 3   PNYRGVRKRKWGKWVSEIREPGKKTRIWLGSYHLPEMAAAAYDVAALHLRGPDAHLNFPE 62
           P YRGVRKRKWGKWVSEIREPGKKTRIWLGSY  PEMAAAAYDVAALHLRG  A LNFPE
Sbjct: 19  PAYRGVRKRKWGKWVSEIREPGKKTRIWLGSYETPEMAAAAYDVAALHLRGRGARLNFPE 78

Query: 63  LADSFPRPASSSPDHIQAAAHMAALRVANTKPPDPPA---------------------PV 122
           L+DS PRPASS  + +Q AA  AAL + +++P  PP+                     PV
Sbjct: 79  LSDSLPRPASSCGEDVQMAAQQAALLLKSSRPSPPPSEAAAPNDKSSDSGGAVKSCSVPV 138

Query: 123 RVGLSPSQIQAINESPLDSPTMWMQMAAEALSLQPHDWD 141
            VGLS SQIQAINESPLDSP MWMQM AEAL    H ++
Sbjct: 139 TVGLSASQIQAINESPLDSPKMWMQM-AEALLFADHHYN 176

[Close]
BLAST of Lsi08G000770 vs. TAIR10
Match: AT1G33760.1 (AT1G33760.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 172.2 bits (435), Expect = 2.6e-43
Identity = 96/153 (62.75%), Postives = 106/153 (69.28%), Query Frame = 1 

Query: 4   NYRGVRKRKWGKWVSEIREPGKKTRIWLGSYHLPEMAAAAYDVAALHLRGPDAHLNFPEL 63
           +YRG+R+RKWGKWVSEIREPGKKTRIWLGSY   EMAAAAYD AALHLRG   +LNFPEL
Sbjct: 19  SYRGIRRRKWGKWVSEIREPGKKTRIWLGSYETAEMAAAAYDAAALHLRGRGTNLNFPEL 78

Query: 64  ADSFPRPASSSPDHIQAAAHMAALRVANTKPPDPPAP-----VRVGLSPSQIQAINESPL 123
            DSFPRP SSS +HIQAAA  AAL     +  +P         RVGLSP QIQAINESPL
Sbjct: 79  VDSFPRPESSSSEHIQAAAQDAALMFKPGRLSEPALESGQGLSRVGLSPDQIQAINESPL 138

Query: 124 DSPTM-WMQMAAEALSLQPHDWDEEYNNMHNHH 151
           DSP M WMQ       L+  D++E Y      H
Sbjct: 139 DSPRMGWMQ------DLEVADYEELYGQFFGQH 165

[Close]
BLAST of Lsi08G000770 vs. TAIR10
Match: AT1G71450.1 (AT1G71450.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 147.9 bits (372), Expect = 5.3e-36
Identity = 86/162 (53.09%), Postives = 96/162 (59.26%), Query Frame = 1 

Query: 5   YRGVRKRKWGKWVSEIREPGKKTRIWLGSYHLPEMAAAAYDVAALHLRGPDAHLNFPELA 64
           YRGVRKRKWGKWVSEIREPG K RIWLGS+  PEMAA AYDVAA H RG +A LNFPELA
Sbjct: 24  YRGVRKRKWGKWVSEIREPGTKNRIWLGSFETPEMAATAYDVAAFHFRGREARLNFPELA 83

Query: 65  DSFPRPASSSPDHIQAAAHMAAL----------RVANTKPPDPPAPVRVGLSPSQIQAIN 124
            S PRPA SS D I+ A H A L             ++      AP  V LSP +IQAIN
Sbjct: 84  SSLPRPADSSSDSIRMAVHEATLCRTTEGTESAMQVDSSSSSNVAPTMVRLSPREIQAIN 143

Query: 125 ESPLDSPTMWMQMAAEALSLQPHDWDEEYNNMHNHHS--IWD 155
           ES L SPT  M    + +       D E N    + S  +WD
Sbjct: 144 ESTLGSPTTMMHSTYDPMEFAN---DVEMNAWETYQSDFLWD 182

[Close]
BLAST of Lsi08G000770 vs. TAIR10
Match: AT2G35700.1 (AT2G35700.1 ERF family protein 38)

HSP 1 Score: 126.3 bits (316), Expect = 1.6e-29
Identity = 69/130 (53.08%), Postives = 85/130 (65.38%), Query Frame = 1 

Query: 3   PNYRGVRKRKWGKWVSEIREPGKKTRIWLGSYHLPEMAAAAYDVAALHLRGPDAHLNFPE 62
           PN+RGVR R+WGKWVSEIREP KK+RIWLG++   EMAA A+DVAAL ++G  AHLNFPE
Sbjct: 43  PNFRGVRMRQWGKWVSEIREPKKKSRIWLGTFSTAEMAARAHDVAALAIKGGSAHLNFPE 102

Query: 63  LADSFPRPASSSPDHIQAAAHMAALRVA-----NTKPPDPPAPVRVGLSPSQIQAINESP 122
           LA   PRPAS+ P  IQAAA  AA  VA      T  P P   V    SP+ I   +++ 
Sbjct: 103 LAYHLPRPASADPKDIQAAAAAAAAAVAIDMDVETSSPSPSPTVTETSSPAMIALSDDAF 162

Query: 123 LDSPTMWMQM 128
            D P + + +
Sbjct: 163 SDLPDLLLNV 172

[Close]
BLAST of Lsi08G000770 vs. TAIR10
Match: AT1G77200.1 (AT1G77200.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 122.5 bits (306), Expect = 2.4e-28
Identity = 71/140 (50.71%), Postives = 82/140 (58.57%), Query Frame = 1 

Query: 2   DPNYRGVRKRKWGKWVSEIREPGKKTRIWLGSYHLPEMAAAAYDVAALHLRGPDAHLNFP 61
           DP YRGVR R WGKWVSEIREP KK+RIWLG++  PEMAA A+D AAL ++G  A LNFP
Sbjct: 40  DPGYRGVRMRTWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDAAALTIKGTSAVLNFP 99

Query: 62  ELADSFPRPASSSPDHIQAAAHMAAL--------RVANTKPPDPPAPVRVGLSPSQIQAI 121
           ELA   PRPASSSP  +QAAA +AA          +  + P    AP    LS S     
Sbjct: 100 ELATYLPRPASSSPRDVQAAAAVAAAMDFSPSSSSLVVSDPTTVIAPAETQLSSSSYSTC 159

Query: 122 NESPLDSPTMWMQMAAEALS 134
             S L   +      AE LS
Sbjct: 160 TSSSLSPSSEEAASTAEELS 179

[Close]
BLAST of Lsi08G000770 vs. TAIR10
Match: AT4G16750.1 (AT4G16750.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 122.1 bits (305), Expect = 3.1e-28
Identity = 66/115 (57.39%), Postives = 80/115 (69.57%), Query Frame = 1 

Query: 3   PNYRGVRKRKWGKWVSEIREPGKKTRIWLGSYHLPEMAAAAYDVAALHLRGPDAHLNFPE 62
           PN+RGVR R+WGKWVSEIREP KK+RIWLG++  PEMAA A+DVAAL ++G  AHLNFPE
Sbjct: 38  PNFRGVRMRQWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALAIKGGSAHLNFPE 97

Query: 63  LADSFPRPASSSPDHIQAAAHMAALRVANTKPPDPPAPVRVGLSPSQIQAINESP 118
           LA   PRPAS+ P  IQ AA  AA    + K P+ P+   V  SP    A ++ P
Sbjct: 98  LAYHLPRPASADPKDIQEAA--AAAAAVDWKAPESPSST-VTSSPVADDAFSDLP 149

[Close]
BLAST of Lsi08G000770 vs. NCBI nr
Match: gi|659119326|ref|XP_008459595.1| (PREDICTED: ethylene-responsive transcription factor ERF022-like [Cucumis melo])

HSP 1 Score: 293.5 bits (750), Expect = 2.2e-76
Identity = 145/161 (90.06%), Postives = 150/161 (93.17%), Query Frame = 1 

Query: 1   MDPNYRGVRKRKWGKWVSEIREPGKKTRIWLGSYHLPEMAAAAYDVAALHLRGPDAHLNF 60
           MDPNYRGVRKRKWGKWVSEIREPGKKTRIWLGSYHLPEMAAAAYDVAALHLRGPDA LNF
Sbjct: 1   MDPNYRGVRKRKWGKWVSEIREPGKKTRIWLGSYHLPEMAAAAYDVAALHLRGPDARLNF 60

Query: 61  PELADSFPRPASSSPDHIQAAAHMAALRVANT-KPPDPPAPVRVGLSPSQIQAINESPLD 120
           P+LADSFPRPASSSPDHIQAAAHMAALR ANT KPP+PPAPVRVGLSPSQIQAINESPLD
Sbjct: 61  PDLADSFPRPASSSPDHIQAAAHMAALRFANTCKPPEPPAPVRVGLSPSQIQAINESPLD 120

Query: 121 SPTMWMQMAAEALSLQPHDWDEEYNNMHN-----HHSIWDY 156
           SPTMWMQMAAEALSLQP +WD+EYN  +N     HHSIWDY
Sbjct: 121 SPTMWMQMAAEALSLQPREWDDEYNYNNNNMQLHHHSIWDY 161

[Close]
BLAST of Lsi08G000770 vs. NCBI nr
Match: gi|449447757|ref|XP_004141634.1| (PREDICTED: ethylene-responsive transcription factor ERF022 [Cucumis sativus])

HSP 1 Score: 286.2 bits (731), Expect = 3.5e-74
Identity = 143/163 (87.73%), Postives = 150/163 (92.02%), Query Frame = 1 

Query: 1   MDPNYRGVRKRKWGKWVSEIREPGKKTRIWLGSYHLPEMAAAAYDVAALHLRGPDAHLNF 60
           MDPNYRGVRKRKWGKWVSEIREPGKKTRIWLGSYHLPEMAAAAYDVAALHLRGPDA LNF
Sbjct: 1   MDPNYRGVRKRKWGKWVSEIREPGKKTRIWLGSYHLPEMAAAAYDVAALHLRGPDARLNF 60

Query: 61  PELADSFPRPASSSPDHIQAAAHMAALRVANTKPPDP-PAPVRVGLSPSQIQAINESPLD 120
           P+LADSFPRPASSSPDHIQAAAHMAALR ANTKPP+P PAPVRVGLS SQIQAINESPLD
Sbjct: 61  PDLADSFPRPASSSPDHIQAAAHMAALRFANTKPPEPAPAPVRVGLSASQIQAINESPLD 120

Query: 121 SPTMWMQMAAEALSLQPHDWDEE-----YNNMHNH--HSIWDY 156
           SPTMWMQMAAEALSL+ H+WD++     YNNM +H  HSIWDY
Sbjct: 121 SPTMWMQMAAEALSLEGHEWDDDEEYNYYNNMQHHHDHSIWDY 163

[Close]
BLAST of Lsi08G000770 vs. NCBI nr
Match: gi|1021514366|ref|XP_016200693.1| (PREDICTED: ethylene-responsive transcription factor ERF022-like [Arachis ipaensis])

HSP 1 Score: 194.5 bits (493), Expect = 1.4e-46
Identity = 103/163 (63.19%), Postives = 117/163 (71.78%), Query Frame = 1 

Query: 4   NYRGVRKRKWGKWVSEIREPGKKTRIWLGSYHLPEMAAAAYDVAALHLRGPDAHLNFPEL 63
           +YRGVRKRKWGKWVSEIREPGKKTRIWLGSY LPEMAAAAYDVAALHLRG  A LNFPEL
Sbjct: 22  SYRGVRKRKWGKWVSEIREPGKKTRIWLGSYELPEMAAAAYDVAALHLRGRSARLNFPEL 81

Query: 64  ADSFPRPASSSPDHIQAAAHMAALRVANTKPPDPP--------APVRVGLSPSQIQAINE 123
            ++ PRP SS  + +QAAA  AALR  ++   D           PVR+GLSPSQIQAINE
Sbjct: 82  VETMPRPVSSRAEDVQAAAQQAALRFKSSTEVDSAPDNNKGTILPVRIGLSPSQIQAINE 141

Query: 124 SPLDSPTMWMQMAAEALSLQPHDWDEEYNNMHNHHSIWDYSSI 159
           SPLDSP MWM+MA EA     HD     +N H+ +  +DY  +
Sbjct: 142 SPLDSPKMWMRMATEAFMFGFHD-----HNYHHDYCDYDYGML 179

[Close]
BLAST of Lsi08G000770 vs. NCBI nr
Match: gi|697131379|ref|XP_009619745.1| (PREDICTED: ethylene-responsive transcription factor ERF022-like [Nicotiana tomentosiformis])

HSP 1 Score: 190.7 bits (483), Expect = 2.0e-45
Identity = 104/186 (55.91%), Postives = 117/186 (62.90%), Query Frame = 1 

Query: 5   YRGVRKRKWGKWVSEIREPGKKTRIWLGSYHLPEMAAAAYDVAALHLRGPDAHLNFPELA 64
           YRGVRKRKWGKWVSEIREPGKKTRIWLGSY  PEMAAAAYDVAA HL+G  A LNFPEL 
Sbjct: 13  YRGVRKRKWGKWVSEIREPGKKTRIWLGSYETPEMAAAAYDVAAFHLKGERARLNFPELI 72

Query: 65  DSFPRPASSSPDHIQAAAHMAALRVANTKPPDPP-----------APVRVGLSPSQIQAI 124
           DSFP+P+SS P+ +Q AAH AA+R    K P+PP            PVRVGLS SQIQAI
Sbjct: 73  DSFPKPSSSKPEDVQMAAHEAAMRFKIRKTPEPPESGGCGGGGTVVPVRVGLSSSQIQAI 132

Query: 125 NESPLDSPTMWMQMAAEALSLQP------------------------HDWDEEYNNMHNH 156
           NESPLDSP MWM++    L   P                         +WDE      +H
Sbjct: 133 NESPLDSPKMWMELTGALLLRDPVREYTCPSYPFTDPMVLCEDIAEFGEWDEV---QQHH 192

[Close]
BLAST of Lsi08G000770 vs. NCBI nr
Match: gi|970062239|ref|XP_015058008.1| (PREDICTED: ethylene-responsive transcription factor ERF022-like [Solanum pennellii])

HSP 1 Score: 189.1 bits (479), Expect = 5.8e-45
Identity = 99/160 (61.88%), Postives = 116/160 (72.50%), Query Frame = 1 

Query: 5   YRGVRKRKWGKWVSEIREPGKKTRIWLGSYHLPEMAAAAYDVAALHLRG--PDAHLNFPE 64
           YRGVRKRKWGKWVSEIREPGKKTRIWLGSY   EMAAAAYDVAA HL+G  P+  LNFPE
Sbjct: 14  YRGVRKRKWGKWVSEIREPGKKTRIWLGSYEKAEMAAAAYDVAAFHLKGERPNLRLNFPE 73

Query: 65  LADSFPRPASSSPDHIQAAAHMAALRVANTKPPDPP----APVRVGLSPSQIQAINESPL 124
           L  +FP+P+SS P+ +Q AAH AA+R   +    P      PVRVGLSPSQIQAINESPL
Sbjct: 74  LIHTFPKPSSSRPEDVQMAAHEAAMRFKPSIDDHPEECGVGPVRVGLSPSQIQAINESPL 133

Query: 125 DSPTMWMQMAAEALSLQPHDWDEEY---NNMHNHHSIWDY 156
           DSP MWM++A   L ++ +    +Y      H+H SIWD+
Sbjct: 134 DSPKMWMELAGALLPVREYTCPTDYFEDETQHHHESIWDF 173

The following BLAST results are available for this feature:
BLAST of Lsi08G000770 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ERF22_ARATH4.6e-4262.75Ethylene-responsive transcription factor ERF022 OS=Arabidopsis thaliana GN=ERF02... [more]
ERF21_ARATH9.3e-3553.09Ethylene-responsive transcription factor ERF021 OS=Arabidopsis thaliana GN=ERF02... [more]
ERF38_ARATH2.9e-2853.08Ethylene-responsive transcription factor ERF038 OS=Arabidopsis thaliana GN=ERF03... [more]
ERF37_ARATH4.2e-2750.71Ethylene-responsive transcription factor ERF037 OS=Arabidopsis thaliana GN=ERF03... [more]
ERF39_ARATH5.5e-2757.39Ethylene-responsive transcription factor ERF039 OS=Arabidopsis thaliana GN=ERF03... [more]
BLAST of Lsi08G000770 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KUT8_CUCSA2.4e-7487.73Uncharacterized protein OS=Cucumis sativus GN=Csa_5G649870 PE=4 SV=1[more]
A9PL88_POPTR6.9e-4559.77TINY-like protein OS=Populus trichocarpa GN=TINYL19 PE=4 SV=1[more]
U5FUY3_POPTR6.9e-4559.77Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s10330g PE=4 SV=1[more]
M1BJ67_SOLTU9.1e-4560.84Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400018054 PE=4 SV=1[more]
W6FTF6_9ROSA1.2e-4464.15Dehydration responsive element binding transcription factor OS=Morus notabilis G... [more]
BLAST of Lsi08G000770 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G33760.12.6e-4362.75 Integrase-type DNA-binding superfamily protein[more]
AT1G71450.15.3e-3653.09 Integrase-type DNA-binding superfamily protein[more]
AT2G35700.11.6e-2953.08 ERF family protein 38[more]
AT1G77200.12.4e-2850.71 Integrase-type DNA-binding superfamily protein[more]
AT4G16750.13.1e-2857.39 Integrase-type DNA-binding superfamily protein[more]
BLAST of Lsi08G000770 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659119326|ref|XP_008459595.1|2.2e-7690.06PREDICTED: ethylene-responsive transcription factor ERF022-like [Cucumis melo][more]
gi|449447757|ref|XP_004141634.1|3.5e-7487.73PREDICTED: ethylene-responsive transcription factor ERF022 [Cucumis sativus][more]
gi|1021514366|ref|XP_016200693.1|1.4e-4663.19PREDICTED: ethylene-responsive transcription factor ERF022-like [Arachis ipaensi... [more]
gi|697131379|ref|XP_009619745.1|2.0e-4555.91PREDICTED: ethylene-responsive transcription factor ERF022-like [Nicotiana tomen... [more]
gi|970062239|ref|XP_015058008.1|5.8e-4561.88PREDICTED: ethylene-responsive transcription factor ERF022-like [Solanum pennell... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003700transcription factor activity, sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR016177DNA-bd_dom_sf
IPR001471AP2/ERF_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi08G000770.1Lsi08G000770.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001471AP2/ERF domainPRINTSPR00367ETHRSPELEMNTcoord: 5..16
score: 8.1E-13coord: 43..63
score: 8.1
IPR001471AP2/ERF domainGENE3DG3DSA:3.30.730.10coord: 4..62
score: 7.5
IPR001471AP2/ERF domainPFAMPF00847AP2coord: 3..53
score: 3.8
IPR001471AP2/ERF domainSMARTSM00380rav1_2coord: 4..67
score: 3.4
IPR001471AP2/ERF domainPROFILEPS51032AP2_ERFcoord: 4..61
score: 22
IPR016177DNA-binding domainunknownSSF54171DNA-binding domaincoord: 4..62
score: 1.7
NoneNo IPR availablePANTHERPTHR31985FAMILY NOT NAMEDcoord: 2..156
score: 4.5
NoneNo IPR availablePANTHERPTHR31985:SF28SUBFAMILY NOT NAMEDcoord: 2..156
score: 4.5