Lsi08G000660 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi08G000660
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	RNA polymerase II transcription mediator
Location	chr08 : 1418234 .. 1424264 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGTTTGATTTAGTGAATCGTGAAACATTCAATCCATCCTTAGGTATCAACGTGACTGGCATACGAGAGAATTACTTGCAATTAAGTATAGATCAGGGCACCTCGGTCTTTATCTCTCTTGTGCTATCTGGTCAAAGTTGCCAAACAGTTGAAGGTGCAAATACTGGGATTCTGGATAATGCAAATTTACCTTTTGATTCCCTTGATGAGATTGAATTACCAGATAGAAGTGATCCCCTTGAAAAGAAATTGCGGAATCCAAATCATATAACCTTTGATAGACCCATTTCATTATTAAGCAGACAATCAGGTCAAGGTTCTAATGATGGATCTGGACTTCTTGGTCATTTTGTTTGTCTCTGACTCGCAGAATGTTTGCAAACAATGTTCTTATGGAGCTCAAAAATTGTTGAAATTAAATTAATCTAGACCTCTTAATACATGAATTACATTATTGCATACATGAATATTTGAGATTCAAGGAATAGTTAGATACATGAATTACCAAATACATTGATGAATGTTCATGTATTGGTGAAGAGTCACATGTATTGATATTTATTGTTGATGTCTTTTGATTTACTTTCCTACTAGTATAAATATGTGTAGGATTTTTCATTTGTAAGAAGCAAGAAAGAAAAAGAAAGTTTATAAGAAATATTGAAGTTCAATTCTCCTAAATTGTGTGAGTAAGAGAACAATTTTCTTCTCTTGTCTCTTGATTTATATTGTGTGGGTTTACTACGTTTCCAACAAGTGGTATCAGAGGAGGATTAAAGATGGCTTCAAATGGTAGCATGTTGCAACCCCAACTTCCAAGATTTAGTGGGAAGAATTTCAATCAGCGGAGTATTCAAATGAAAGTGTTATATGGCTCACAAGAATTTTGGGATATTGTTGAAAGAGGATATACTGAAGTCGAGAATCAGAATGGACTCACAAATCAACAACTTACTAAGTTGAGAGAAAATCGTAAGAAAGACAAGAAGGCTTTATTCTTCATTTATCAAGCTGTTGATGAATTTGTTTTCGAGAGAATTTCAACAGCTACCTCTGCAAAGGCGACATGGGATATTTTACAATCCACCTATCAAGGAGAAGATAAGGTAACAATGGTAAGACTACAAGCCCTCAGATCTGAATTTGATGGCATTAAGATGAAAGAGACCAAAACTGTTGAAGAATATTTCAATCGTATTCTTGCGATTGTCAACAGTTTGAGAACAAATGGTGAAGAAGTAGGTGACCAAAGAATAGTTGAAAAGATTCTTAGAAGTATGCCAAGAAAGTTTGAGCATATTGTTGTTGCCATTGAAGAATCAAAAGACTTATCCATGTTGTCCGTAAATAGCTTGATGGGTTCTCTTCAATCCCATAAGCTTAGATTAAAATAATTTGATGTTAATCCCGAGGAAGCTTTTCAGATGCAAACTTCATTCAGAGGCGATTCACGTGGAAGACGTGGTGGTTGTGGAAGACGAGGAGGTGGAAGAAACTATGATAATAGAAATGGTGGAAATTCAAAAAATTCACAAGAAAGCTCTTCTTCATCTCGAGGCAGAGGAAGCGGAAGAGGAAGAGGTTTTGGCAGAAACCAAGGAGGTGGTCGAGGTAATTTGTCTCACATTCAATGTTTTAACTGCAAAAAGTATGACCATTTTCAAGCAGATTGTTGGGCACCGAAAAATGAAGATGGAAATTCCACCATGATGCATAAAGAGGAGAAAAATAATGAAGGCTTTCTATTTCTTGCATGTAGTGTTCAAGACAACATTGTAGAGTCTACATGGTATCTTGATAGTGGTTGTAGTAACCACATGACAGGAAATAGAAGTATATTTGTTACTTTGGATGAATCTCTCCAAAGTGAAGTAAAAACTGGTGATGACACTAGATTGCAAGTCAAAGGCCAAGGTGATATTCTTGTGAAGACGAAAAAAGGTACAAAACGAGTTACAGATGTGTTCTATGTTCCAGGTCTGAAGCATAATCTTTTGAGTATTGGCCAACTGCTTCAGCGAGGTCAAAAAGTTTCATTTGAAGGTGATGTATGTACAATCAAATATCAGACTGGTGTTCTTATTGCCAAGGTAAAAATAACTACTAATAAGATGTTTCCTCTTAAATTTACATATGGTCAAATATCTTGTTTTAGCAGCATATTAAAGGATCCATCCTGGCTTTGGCATTTTCGATATGGTCACTTGAATTTTGGATCGTTATCTCATTTGTGCAAAAATCATATGCTGAGAGGCATACAAAATATCAACCATGAGACATATATTTGTGAAGTGTGTATACTTGCAAAACATCATAGAGATTCATTTCCAACTGGAAAAGCTTGGAGAGCCTCCAGACCTCTTGAGTTGATTCATACAGATTTGTATGGTCCCATGCGTACAATATCAAATGGAGGTAATCGATATTTCATAACCTTCATTGATGATTTCAGCAGAAAGTTGTGGATTTATCTTTTGAAAGAAAAATCTGAAGCATTTGAATGTTTTACATCTTTCAAAGTCTTAGTTGAGAATCAAAGTGGTCATAAGATAAAAACTTTGAGATCTGATCGTGGTGGAGAATATATAGTTTTTGATAAATTTTTTAAGGAGCAAGGAATTCATCATCAAATGACAGCTCGAATGACTCCACAAGAAAATGGAGTTGCAGAGAGAAAGAATAGAACGATCATGGAGATGGCGAGAAGTATGCTAAAAGCAAAAAGATGCCAGATTAGTTTTGGGGAGATTCTGTTGCATGTACTACTTACATTTTGAATCGAGCTCCAACAAAGAGTGTTCCAGGTATGACTCCTTATGAAGCATGGTGTAGTGAGAAGCCATGTGTTAGTCACTTGAGAGTTTTTGGGAGTATAGCTTATTCTCACATACCAAATCAGCTAAGAGGCAAGCTTGATGATAAATCTGAAAAATGTATTATGGTAGGCTATAGTGAAAATTCTAAAGCTTATCGGTTGTATAATCCTGTGTCAAGAAAGATTACTATCAGCAGGGATGTGATTTTCAATGAAGATGAATTCTGGAGTTGGGATGCTGTTGGTGAAGTTGAAAGTCCATTTCATGTTAGCATGGATGGGAATGAAGATGCTCAAGCCTCAGAGCAAGTAGAAATTCAAGCAGTGGCATCATCTTCGTCTGCAGTGCCATTTTCCACAAGTAATGATGAAATCTCACCAAGGAGAATGAGGAATATTCAAGATATTTATAATTCTACTAGCAGAATTGACGATGATCATGTTGCTAATTTTGCATTATTTGCTGGTGTTGATCCTATAACTTTTGATGAGGCCATCCAAGATGAGAAATGGAAGATTGCAATGGATCAAGAAATTGATGCGATAAAAAGAAATGAAACATGGGAGTTGATGGAGCTTCCTGTAAACAAAAAGGCTCTTGGAGTAAAATGGGTGTACAGAACAAAGTTGAAGTCAAATGGTGAAGTTGAAAAATACAAGGCAAGACTTGTTGTAAAAGGTTACAAGCAGGAATATGGTGTAGATTATGAATAAATATTTGCTCCTGTGACGAGAATGGAAACCATCCGATTGATTTTATGTTTAACTGCTCAAAATGGATGGAATGTTTATCAAATGGATGTAAAATCCGCTTTTTTGAATGGATACTTGAAGGAAGAGATATTTGTTGAACAACCTTTGGGTTATGTGAAACAAGGAGAAAAAAGAAAAGGTGTACAAGTTGAAAAAGGCCTTGTATGGATTGAAGCAAGCTCCACGAGCTTGGTACAGTCGCATTGACAGTTTCTTTCTGAAGACGAGATTTCGAAGGTGTGCATATGAGCATGCATTCTATGTCAAAGAAGATAAGTATGGCAAATTTCTTATCGTTTCACTTTACGTTGATGATTTACTTTTCACTGGAAATGATAAATTGTTGTGTGATGATTTTAAGAATTCCATGAAAAAGGAATTTGAAATGAATGATATGGGTCTCATCCACTATTTTCTCGGAATTGAAGTTGATAAAAAAGATGGAGAGATTATCATCTCACAACAAAAGAATGCTCATGATTTGTTGAAAAAAATTCGGATGGAAAATGCTTTTCCTTGCAACACTCCCATGGATGCAAATTTGAAATTGAGTAAGGATGACATTGGAGAAGAAGTTGATCCAAGTTTGTATCGAAGTCTAGTTGGAAGCGTTATGTACTTGACGGCAACAAGACCTGATATTTCATTTGCTGTAAGTATGTTAAGTAGATTCATGACAAGCCCGAAAAGAAGTCACTGGGAAGCAAGTAAAAGAGTTCTTCGTTACATTTGTGGAACCATTAATTTTGGAATTTATTACAAGAAAGTTCTAGAATCAATATTGTTTGGCTTTTGTGATAGTGATTGGGGCGGTAATGTAGATGATAACAAAAGTACATCGGGTTATGTTTTTAGCATCGGTTCAGGTGTTTTTTCATGGAGTTCAAAGAAGCAGCCTGTTGTTGCTCTTTCTACCACCGAAGCAGAGTATATCTCTTTATCTACAGCTGGATGTCAAGCTTTATGACTTAGATGGATGTTGAAGGAATTGAAGTGTACTCAAAGAAGTGAGACTGTTTTATTTTGTGATAATGGATCTGCTATAGCACTATCAAAGAATCCAATTTTTCATGGAAGAAGCAAGCATATTAGAATCAAGTATCATTTTATCAGAGACTTGGTTAATGATGGAAAAGTGATAGTGAAATATTGCAAGACTCAAGATCAAGTGGCAGACATTTTTACAAAAGCATTGAAGTTTGATTTGTTTGTAAAGTTTAGAGAAAAACTTGGAGTTGCTCAAGTCGAGATTAAGGGAGGATGTTGAAATTAAATTAATCTAGACCTCTTAATACATGAATTACATTATTACATACATGAATAGTTGAGATTCAAGGAATAGTTAGATACATGAATTACCAAATACATTGATGAATGCCCATGTATTGGTGAAGAGTCACATGTATTGATATTTATTGTTGATGTCTTTTGATTTACTTTCCTACTAGTATAAATATGTGTAGGATTTTTCATTTGTAAGAAGCAAGAAAGAAAAAGAAAGTTTATAAGAAATATTGAAGTTCAATTCTCCTAAATTGTGTGAGTAAGAGAACAATCTTCTTCTCTTGTCTCTTGATTTATATTGTGTGGGTTTACTACGTTTCCAACAAAAATGTGGTAAAGTCCTAATTTCTTAATAACTCAATTTCATATGAAAGCACACTGCTTCTGTATTTGATGTTACCAGCATATTAATCTTGTAGATTATCTTTGGTTCGTTCTTAGGTTTGGAAAGTCCCGTTTCTTCAGTTGATATCCCATCCCACTTGGAATTCTCGAAAATCATCATGGACATTTTTTATGGAAGTTCCTCGGTCCATACTTCATCCTAATAGCATCCAGGCTCGTACATCAGACAGTCATCAGATGAATAATGTAACCAAAACACAATTTCTGACTAAAGTGGTTGTAAATGATGATTGCATTACTATCGAAGGGGAAGGTGCACCTAATGTCGTTGGCTTGTTCAACGGAAATTCCAAGGATATCTATTCAATGAACAAATATGGTTGTGACTTGGCTGATCTTCTCGTTACAATTTTGTTGCAGGTGAGTTCAATGTAGATTTCCATGCTTTTGAGCTTCTTTATCAATGGAAAGTAACAGTAATAGTATCGTTTTGTTTCCGTAACAGGTTGCGAGCCAAACTATTCTTTGGCTTCATGAGGAAGCTCTAACCTGGGGAATAAAGGCCAACCGTGACTTCCTAAGTCTGTCATTTGAGCTAGAACAAGGTGAAACATTCCGGCTGGTAGCCATGTGGACCCAGAAGATCCTCAAGGATGCCTTTCCTGGTGGTTAGTAATGGACGATGACTTGATGGAGGACAGGAAACTTAATTTTGACAGTTCAGATGTTGTGCCTGAATACAGGAAGTTTTTGGGCCATTTATCTCTAGAAGTTTTGCATTCAACACTAATGGATTTGGTTAGTTTGTGCAATGGAGTTGGTGGTAGACTATAA

mRNA sequence

GTGTTTGATTTAGTGAATCGTGAAACATTCAATCCATCCTTAGGTATCAACGTGACTGGCATACGAGAGAATTACTTGCAATTAAGTATAGATCAGGGCACCTCGGTCTTTATCTCTCTTGTGCTATCTGGTCAAAGTTGCCAAACAGTTGAAGGTGCAAATACTGGGATTCTGGATAATGCAAATTTACCTTTTGATTCCCTTGATGAGATTGAATTACCAGATAGAAGTGATCCCCTTGAAAAGAAATTGCGGAATCCAAATCATATAACCTTTGATAGACCCATTTCATTATTAAGCAGACAATCAGGTCAAGGTTCTAATGATGGATCTGGACTTCTTGAGGCGATTCACGTGGAAGACGTGGTGGTTGTGGAAGACGAGGAGGTGGAAGAAACTATGATAATAGAAATGGTGGAAATTCAAAAAATTCACAAGAAAGCTCTTCTTCATCTCGAGGCAGAGGAAGCGGAAGAGGAAGAGGTTTTGGCAGAAACCAAGGAGGTGGTCGAGGTTTGGAAAGTCCCGTTTCTTCAGTTGATATCCCATCCCACTTGGAATTCTCGAAAATCATCATGGACATTTTTTATGGAAGTTCCTCGGTCCATACTTCATCCTAATAGCATCCAGGCTCGTACATCAGACAGTCATCAGATGAATAATGTAACCAAAACACAATTTCTGACTAAAGTGGTTGTAAATGATGATTGCATTACTATCGAAGGGGAAGGTGCACCTAATGTCGTTGGCTTGTTCAACGGAAATTCCAAGGATATCTATTCAATGAACAAATATGGTTGTGACTTGGCTGATCTTCTCGTTACAATTTTGTTGCAGGTTGCGAGCCAAACTATTCTTTGGCTTCATGAGGAAGCTCTAACCTGGGGAATAAAGGCCAACCGTGACTTCCTAAGTCTGTCATTTGAGCTAGAACAAGGTGAAACATTCCGGCTGGTAGCCATGTGGACCCAGAAGATCCTCAAGGATGCCTTTCCTGGTGTAATGGACGATGACTTGATGGAGGACAGGAAACTTAATTTTGACAGTTCAGATGTTGTGCCTGAATACAGGAAGTTTTTGGGCCATTTATCTCTAGAAGTTTTGCATTCAACACTAATGGATTTGGTTAGTTTGTGCAATGGAGTTGGTGGTAGACTATAA

Coding sequence (CDS)

GTGTTTGATTTAGTGAATCGTGAAACATTCAATCCATCCTTAGGTATCAACGTGACTGGCATACGAGAGAATTACTTGCAATTAAGTATAGATCAGGGCACCTCGGTCTTTATCTCTCTTGTGCTATCTGGTCAAAGTTGCCAAACAGTTGAAGGTGCAAATACTGGGATTCTGGATAATGCAAATTTACCTTTTGATTCCCTTGATGAGATTGAATTACCAGATAGAAGTGATCCCCTTGAAAAGAAATTGCGGAATCCAAATCATATAACCTTTGATAGACCCATTTCATTATTAAGCAGACAATCAGGTCAAGGTTCTAATGATGGATCTGGACTTCTTGAGGCGATTCACGTGGAAGACGTGGTGGTTGTGGAAGACGAGGAGGTGGAAGAAACTATGATAATAGAAATGGTGGAAATTCAAAAAATTCACAAGAAAGCTCTTCTTCATCTCGAGGCAGAGGAAGCGGAAGAGGAAGAGGTTTTGGCAGAAACCAAGGAGGTGGTCGAGGTTTGGAAAGTCCCGTTTCTTCAGTTGATATCCCATCCCACTTGGAATTCTCGAAAATCATCATGGACATTTTTTATGGAAGTTCCTCGGTCCATACTTCATCCTAATAGCATCCAGGCTCGTACATCAGACAGTCATCAGATGAATAATGTAACCAAAACACAATTTCTGACTAAAGTGGTTGTAAATGATGATTGCATTACTATCGAAGGGGAAGGTGCACCTAATGTCGTTGGCTTGTTCAACGGAAATTCCAAGGATATCTATTCAATGAACAAATATGGTTGTGACTTGGCTGATCTTCTCGTTACAATTTTGTTGCAGGTTGCGAGCCAAACTATTCTTTGGCTTCATGAGGAAGCTCTAACCTGGGGAATAAAGGCCAACCGTGACTTCCTAAGTCTGTCATTTGAGCTAGAACAAGGTGAAACATTCCGGCTGGTAGCCATGTGGACCCAGAAGATCCTCAAGGATGCCTTTCCTGGTGTAATGGACGATGACTTGATGGAGGACAGGAAACTTAATTTTGACAGTTCAGATGTTGTGCCTGAATACAGGAAGTTTTTGGGCCATTTATCTCTAGAAGTTTTGCATTCAACACTAATGGATTTGGTTAGTTTGTGCAATGGAGTTGGTGGTAGACTATAA

Protein sequence

VFDLVNRETFNPSLGINVTGIRENYLQLSIDQGTSVFISLVLSGQSCQTVEGANTGILDNANLPFDSLDEIELPDRSDPLEKKLRNPNHITFDRPISLLSRQSGQGSNDGSGLLEAIHVEDVVVVEDEEVEETMIIEMVEIQKIHKKALLHLEAEEAEEEEVLAETKEVVEVWKVPFLQLISHPTWNSRKSSWTFFMEVPRSILHPNSIQARTSDSHQMNNVTKTQFLTKVVVNDDCITIEGEGAPNVVGLFNGNSKDIYSMNKYGCDLADLLVTILLQVASQTILWLHEEALTWGIKANRDFLSLSFELEQGETFRLVAMWTQKILKDAFPGVMDDDLMEDRKLNFDSSDVVPEYRKFLGHLSLEVLHSTLMDLVSLCNGVGGRL

Homology

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BLAST of Lsi08G000660 vs. Swiss-Prot
Match: MED17_ARATH (Mediator of RNA polymerase II transcription subunit 17 OS=Arabidopsis thaliana GN=MED17 PE=1 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 1.3e-61
Identity = 151/385 (39.22%), Postives = 220/385 (57.14%), Query Frame = 1


Query: 1   VFDLVNRETFNPSLGINVTGIRENYLQLSIDQGTSVFISLVLSGQSCQTVEGANTGILDN 60
           +FD++NRE FN  +G N++G+REN++++SI QG S+F+SL  SG++    +       ++
Sbjct: 295 LFDMLNREAFNEGVGFNISGLRENFMEMSIGQGASLFVSLHPSGKNPSIKKS------ES 354

Query: 61  ANLPFDSLDEIELPDRSDPLEKKLRNPNHITFDRPISLLSRQSGQGSNDGSGLLEAIHVE 120
           A L  +S   +E  +  D   KKL  PN  +++  +  +  +   G        ++I   
Sbjct: 355 ATLLIESSGRVEPAEGGDYRLKKLGFPNRTSYEIYLQQIFHEHAFGKAKDQLKSKSIRAS 414

Query: 121 DVVVVEDEEVEETMIIEMVEIQKIHK----KALLHLEAEEAEEEEVLAETKEVVEVWKVP 180
           +    + E+   + +++   +   H+    + L+HLE+                 V KVP
Sbjct: 415 N----QTEKDSNSGLLDHFCLSLTHRIFSNRVLVHLESV----------------VCKVP 474

Query: 181 FLQLISHPTWNSRKSSWTFFMEVPRSILHPNSIQARTSDSHQMNNVTKTQFLTKVVVNDD 240
           +L LISHPTWNSR SSWT FM VP SI+     + ++ D  +     KTQF TKVVV DD
Sbjct: 475 YLHLISHPTWNSRTSSWTVFMTVPPSIIPQGRSETQSPDGKRN---LKTQFRTKVVVKDD 534

Query: 241 CITIEGEGAPNVVGLFNGNSKDIYSMNKYGCDLADLLVTILLQVASQTILWLHEEALTWG 300
           CI++E E  PNVVGL   +S +++S+NKY CD+ADL V IL QVASQ + WL EEA T G
Sbjct: 535 CISVEAECTPNVVGLLKSSSCNLFSINKYECDVADLPVMILQQVASQIVCWLLEEARTVG 594

Query: 301 IKANRDFLSLSFELEQGETFRLVAMWTQKILKDAFPG--VMDDDLMEDRKLNFDSSDVVP 360
            KA+R+FLSLS E+ +GE   LVA    +  K       VM++   E+R       + V 
Sbjct: 595 TKASREFLSLSLEIVEGERVSLVAHVNPEDAKGCISWWLVMENGCTEER-------EGVS 643

Query: 361 EYRKFLGHLSLEVLHSTLMDLVSLC 380
           E RK LGHLSL+VL+S LMDL++LC
Sbjct: 655 ESRKLLGHLSLDVLYSVLMDLINLC 643

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BLAST of Lsi08G000660 vs. TrEMBL
Match: A0A0A0KXX2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G650410 PE=4 SV=1)

HSP 1 Score: 502.7 bits (1293), Expect = 4.1e-139
Identity = 279/391 (71.36%), Postives = 302/391 (77.24%), Query Frame = 1


Query: 1   VFDLVNRETFNPSLGINVTGIRENYLQLSIDQGTSVFISLVLSGQSCQTVEGANTGILDN 60
           VFDLVN+E FNPS+GINVTGIRENYLQLSIDQGTSVFISLV SGQS QTVEGAN+ IL+N
Sbjct: 292 VFDLVNQEAFNPSVGINVTGIRENYLQLSIDQGTSVFISLVPSGQSSQTVEGANSEILEN 351

Query: 61  ANLPFDSLDEIELPDRSDPLEKKLRNPNHITFDRPISLLSRQSGQGSNDGSGLLEAIHVE 120
           A+LPFDSLD IELPDRSDPLEKKLRNPNHITF+                    L+ I  E
Sbjct: 352 ASLPFDSLDGIELPDRSDPLEKKLRNPNHITFEI------------------YLQQIFHE 411

Query: 121 DVVVVEDEEVEETMIIEMVEIQKIHKKALLHLEAEEAEE---EEVLAETKEVVEVWKVPF 180
            V V  ++    ++  +  ++       L H     A       VL E + V  VWKVPF
Sbjct: 412 LVFVKSNDRPISSLSRQSGQVSNDGSGLLGHFCLSLAHRMFANNVLMELENV--VWKVPF 471

Query: 181 LQLISHPTWNSRKSSWTFFMEVPRSILHPNSIQARTSDSHQMNNVTKTQFLTKVVVNDDC 240
           LQLISHPTWNSRKSSWTFFMEVP SILHPNSI+ARTSD +QMNNVTKTQFLTKVVVNDDC
Sbjct: 472 LQLISHPTWNSRKSSWTFFMEVPWSILHPNSIKARTSDGYQMNNVTKTQFLTKVVVNDDC 531

Query: 241 ITIEGEGAPNVVGLFNGNSKDIYSMNKYGCDLADLLVTILLQVASQTILWLHEEALTWGI 300
           ITIEGEGAPNVVGLFNGNSKDIYS N+Y CDLADL V ILLQVASQ ILWLHEEAL WGI
Sbjct: 532 ITIEGEGAPNVVGLFNGNSKDIYSTNRYSCDLADLPVIILLQVASQIILWLHEEALIWGI 591

Query: 301 KANRDFLSLSFELEQGETFRLVAMWTQKILKDAFPG--VMDDDLMEDRKLNFDSSDVVPE 360
           KANRDFLSLSFELEQGET RLVA    +  +       VMDD LMEDRKLNF++SDVVPE
Sbjct: 592 KANRDFLSLSFELEQGETLRLVAHVDPEDPQGCLSWWLVMDDGLMEDRKLNFETSDVVPE 651

Query: 361 YRKFLGHLSLEVLHSTLMDLVSLCNGVGGRL 387
           YRKFLGHLSLEVLHSTLMDLVSLC+GVGG L
Sbjct: 652 YRKFLGHLSLEVLHSTLMDLVSLCSGVGGSL 662

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BLAST of Lsi08G000660 vs. TrEMBL
Match: A5BHH4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g05020 PE=4 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 1.8e-86
Identity = 199/391 (50.90%), Postives = 243/391 (62.15%), Query Frame = 1


Query: 1   VFDLVNRETFNPSLGINVTGIRENYLQLSIDQGTSVFISLVLSGQSCQTVEGANTGILDN 60
           VFDLVNRE FN S G+NVTGIRENYLQL+I QG SVF+SLV SGQ  +T +G     L++
Sbjct: 290 VFDLVNREAFNSSSGVNVTGIRENYLQLNIGQGASVFMSLVPSGQDEKTADGMGMQNLES 349

Query: 61  ANLPFDSLDEIELPD-RSDPLEKKLRNPNHITFDRPISLLSRQSGQGSNDGSGLLEAIHV 120
           A LP D+ D ++L D + D  +KK   PN I+ +  +  L                  H 
Sbjct: 350 AILPMDTFDGVKLSDGKHDNDKKKSGFPNRISSEIYLKQL-----------------FHE 409

Query: 121 EDVVVVEDEEVEETMIIEMVEIQKIHKKALLHL---EAEEAEEEEVLAETKEVVEVWKVP 180
              V  +D+ +         +  K     L H     A      +VL E + +V   +VP
Sbjct: 410 HVFVRAKDKHISAGRTQPSSQPAKDGFGLLGHFCMSLAHRIFSSKVLMELENLVS--RVP 469

Query: 181 FLQLISHPTWNSRKSSWTFFMEVPRSILHPNSIQARTSDSHQMNNVTKTQFLTKVVVNDD 240
           +L L+SHPTW+SR SSWT  M+VP S  HP   Q RTSD H + N+ KT F TKVV+NDD
Sbjct: 470 YLHLLSHPTWHSRTSSWTLLMKVPESSFHP-GCQTRTSDIHNVKNIIKTHFRTKVVINDD 529

Query: 241 CITIEGEGAPNVVGLFNGNSKDIYSMNKYGCDLADLLVTILLQVASQTILWLHEEALTWG 300
           CI +EG+GAPNVVGLF G+S+D+ SMN+Y CDLAD+ V +L QVASQ I WLHEEAL  G
Sbjct: 530 CINVEGDGAPNVVGLFKGSSEDVCSMNRYDCDLADIPVILLQQVASQVIRWLHEEALKVG 589

Query: 301 IKANRDFLSLSFELEQGETFRLVAMWTQKILKDAFPG--VMDDDLMEDRKLNFDSSDVVP 360
           IKANRDFL LSFE++QGE   LVA       +       VMDD   ED K + D+ D   
Sbjct: 590 IKANRDFLCLSFEMDQGEMLSLVAHVNPDDPQGCISWWLVMDDGFSEDLKFHTDAPDGGS 649

Query: 361 EYRKFLGHLSLEVLHSTLMDLVSLCNGVGGR 386
           EYRKFLGHLSLEVL+STLMDLVSLCNG GGR
Sbjct: 650 EYRKFLGHLSLEVLYSTLMDLVSLCNG-GGR 659

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BLAST of Lsi08G000660 vs. TrEMBL
Match: M5VWL4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002594mg PE=4 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 7.5e-85
Identity = 202/389 (51.93%), Postives = 248/389 (63.75%), Query Frame = 1


Query: 1   VFDLVNRETFNPSLGINVTGIRENYLQLSIDQGTSVFISLVLSGQSCQTVEGANTGILDN 60
           VFDLVNRE FN SLG+NVTGI+ENYLQL+I QGTSVFISLV S +  QTV+  +T  L+N
Sbjct: 288 VFDLVNREAFNQSLGVNVTGIQENYLQLNIGQGTSVFISLVPS-RGEQTVDSPSTQNLEN 347

Query: 61  ANLPFDSLDEIELP-DRSDPLEKKLRNPNHITFDRPISLLSRQSGQGSNDGSGLLEAIHV 120
             LP D+LD +EL  D+ D ++K    P+ I+ +                    L+ I  
Sbjct: 348 TILPLDTLDGLELAEDKPDTVKKTSLIPDQISCEI------------------YLQQIFH 407

Query: 121 EDVVVVEDEEVEETMIIEMVEIQKIHKKALLHL---EAEEAEEEEVLAETKEVVEVWKVP 180
           + V V   +           ++ K     L H     A      +VL E + VV+   VP
Sbjct: 408 QHVFVKAKDRPTSAGARVSGQLAKEGPGLLGHFCMSLAHRIFSNKVLKELENVVK--GVP 467

Query: 181 FLQLISHPTWNSRKSSWTFFMEVPRSILHPNSIQARTSDSHQMNNVTKTQFLTKVVVNDD 240
           +LQL+SHPTW+SR SSW  F+++P SILH  + Q RTSD   M N+TK+QF TKVVV DD
Sbjct: 468 YLQLLSHPTWHSRTSSWMLFVKIPESILH--ACQTRTSDMRHMRNITKSQFHTKVVVTDD 527

Query: 241 CITIEGEGAPNVVGLFNGNSKDIYSMNKYGCDLADLLVTILLQVASQTILWLHEEALTWG 300
           CI +EGEGAPNVVGLF GNS++I  MN+Y CDLADL V IL QVASQ I WLHEEAL  G
Sbjct: 528 CINVEGEGAPNVVGLFKGNSEEICLMNRYDCDLADLPVIILQQVASQVIRWLHEEALMVG 587

Query: 301 IKANRDFLSLSFELEQGETFRLVAMWTQKILKDAFPG--VMDDDLMEDRKLNFDSSDVVP 360
           IKANRDFL LSFEL+ GET  LVA    +  +       V++   +E+RKL+ D+SD   
Sbjct: 588 IKANRDFLCLSFELDLGETLSLVAHVDPEDGEGCISWWLVINGGFVEERKLSMDASDGAS 647

Query: 361 EYRKFLGHLSLEVLHSTLMDLVSLCNGVG 384
           E RKFLGHLSLEVL+STLMDLVSLC G G
Sbjct: 648 ESRKFLGHLSLEVLYSTLMDLVSLCTGRG 653

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BLAST of Lsi08G000660 vs. TrEMBL
Match: A0A067K814_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13306 PE=4 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 1.6e-82
Identity = 195/387 (50.39%), Postives = 243/387 (62.79%), Query Frame = 1


Query: 1   VFDLVNRETFNPSLGINVTGIRENYLQLSIDQGTSVFISLVLSGQSCQTVEGANTGILDN 60
           VFD+VNRE FN SLG+NVTGI+ENYLQLSI  GTSVF+SLV S +  QT +G    I + 
Sbjct: 297 VFDMVNREAFNQSLGVNVTGIQENYLQLSISTGTSVFLSLVPSVEDEQTADGGGHQISET 356

Query: 61  ANLPFDSLDEIELPDRSDP-LEKKLRNPNHITFDRPISLLSRQSGQGSNDGSGLLEAIHV 120
           A LP DS+DE++LP+     L KK R PN I+ +                   L +  H 
Sbjct: 357 AVLPLDSIDEVKLPEEKHVYLHKKSRFPNRISCE-----------------IYLQQIFHE 416

Query: 121 EDVVVVEDEEVEE-TMIIEMVEIQKIHKKALLHLEAEEAEEEEVLAETKEVVEVWKVPFL 180
              +  +D  +   T +   ++             A      +VL E + V+   KVP+L
Sbjct: 417 HVFLKAKDRPLPTGTRVSSQLKDGSGLLGHFCMTVAHRIFSNKVLMELENVI--CKVPYL 476

Query: 181 QLISHPTWNSRKSSWTFFMEVPRSILHPNSIQARTSDSHQMNNVTKTQFLTKVVVNDDCI 240
            LISHPTW+SR SSWT FM+VP+SILH +S  ++TSD   M +  KT+F TKVVVNDD I
Sbjct: 477 HLISHPTWHSRTSSWTIFMKVPQSILHASS-HSQTSDMKSMKSDIKTEFRTKVVVNDDSI 536

Query: 241 TIEGEGAPNVVGLFNGNSKDIYSMNKYGCDLADLLVTILLQVASQTILWLHEEALTWGIK 300
            +E EGAPNVVGLF G+S D  SMNKY CDLADL   IL QVASQ I WLHEEALT GIK
Sbjct: 537 NVEAEGAPNVVGLFKGSSDDTCSMNKYDCDLADLPAIILQQVASQVIRWLHEEALTVGIK 596

Query: 301 ANRDFLSLSFELEQGETFRLVAMWTQKILKDAFPG--VMDDDLMEDRKLNFDSSDVVPEY 360
           ANRDFLSLSFEL+QGE   +VA    + ++       VM+D   E +KL+ D +D   E 
Sbjct: 597 ANRDFLSLSFELDQGEVLSMVAHVDPEDVEGCISWWLVMEDGFAE-KKLHMDIADDASEC 656

Query: 361 RKFLGHLSLEVLHSTLMDLVSLCNGVG 384
           RKFLG+L L+VL+STLMDLV+LC+G G
Sbjct: 657 RKFLGYLPLDVLYSTLMDLVTLCSGGG 662

[Close]

BLAST of Lsi08G000660 vs. TrEMBL
Match: W9RGP1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_006289 PE=4 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 2.0e-82
Identity = 189/380 (49.74%), Postives = 238/380 (62.63%), Query Frame = 1


Query: 1   VFDLVNRETFNPSLGINVTGIRENYLQLSIDQGTSVFISLVLSGQSCQTVEGANTGILDN 60
           VFDLVNRE FN SLG+NVTGIRENYLQLSI  G SVFISLV S Q  QT + A    ++N
Sbjct: 289 VFDLVNREAFNQSLGVNVTGIRENYLQLSIGLGNSVFISLVSSNQDDQTGDDAGNQDIEN 348

Query: 61  ANLPFDSLDEIELP--DRSDPLEKKLRNPNHITFDRPISLLSRQSGQGSNDGSGLLEAIH 120
           A LP DSLD ++LP  D+ D   K+L  P++I+ +  +  L  +          +     
Sbjct: 349 AILPLDSLDGVKLPEEDKQDTFNKELGTPDYISCEIYLQQLFHEHVFSRAKDKPVSTVSR 408

Query: 121 VEDVVVVEDEEVEETMIIEMVEIQKIHKKALLHLEAEEAEEEEVLAETKEVVEVWKVPFL 180
           V      E   +     + +   +   KK L+ LE                  V  V +L
Sbjct: 409 VSGQPAKEGPSLLGHFCLSLAH-RIFSKKVLVVLENL----------------VSGVSYL 468

Query: 181 QLISHPTWNSRKSSWTFFMEVPRSILHPNSIQARTSDSHQMNNVTKTQFLTKVVVNDDCI 240
           QL+SHPTWNSR SSWT FM++P+SILH  S Q  TSD H M + TK+QF TKVV+ DD I
Sbjct: 469 QLLSHPTWNSRTSSWTIFMKIPQSILHGGSHQ--TSDLHHMKSTTKSQFRTKVVIKDDFI 528

Query: 241 TIEGEGAPNVVGLFNGNSKDIYSMNKYGCDLADLLVTILLQVASQTILWLHEEALTWGIK 300
           ++EGEGAPNVVGLF G+++++ SMN+Y C+L DL V IL QVA Q + WLHEEAL  GIK
Sbjct: 529 SVEGEGAPNVVGLFKGSAQEVSSMNRYECNLEDLPVIILQQVAGQIVRWLHEEALMVGIK 588

Query: 301 ANRDFLSLSFELEQGETFRLVAMWTQKILKDAFPG--VMDDDLMEDRKLNFDSSDVVPEY 360
            NRDFLSLSFELEQGET  L+A    +  +       VM+D   E+ KL+ D SD V EY
Sbjct: 589 VNRDFLSLSFELEQGETLTLLAHVDPEDAQGCISWWLVMEDGFTEEGKLHMDLSDGVSEY 648

Query: 361 RKFLGHLSLEVLHSTLMDLV 377
           R+FLGHLSL++L+STL+DLV
Sbjct: 649 RRFLGHLSLDLLYSTLIDLV 649

[Close]

BLAST of Lsi08G000660 vs. TAIR10
Match: AT5G20170.1 (AT5G20170.1 RNA polymerase II transcription mediators)

HSP 1 Score: 238.4 bits (607), Expect = 7.2e-63
Identity = 151/385 (39.22%), Postives = 220/385 (57.14%), Query Frame = 1


Query: 1   VFDLVNRETFNPSLGINVTGIRENYLQLSIDQGTSVFISLVLSGQSCQTVEGANTGILDN 60
           +FD++NRE FN  +G N++G+REN++++SI QG S+F+SL  SG++    +       ++
Sbjct: 295 LFDMLNREAFNEGVGFNISGLRENFMEMSIGQGASLFVSLHPSGKNPSIKKS------ES 354

Query: 61  ANLPFDSLDEIELPDRSDPLEKKLRNPNHITFDRPISLLSRQSGQGSNDGSGLLEAIHVE 120
           A L  +S   +E  +  D   KKL  PN  +++  +  +  +   G        ++I   
Sbjct: 355 ATLLIESSGRVEPAEGGDYRLKKLGFPNRTSYEIYLQQIFHEHAFGKAKDQLKSKSIRAS 414

Query: 121 DVVVVEDEEVEETMIIEMVEIQKIHK----KALLHLEAEEAEEEEVLAETKEVVEVWKVP 180
           +    + E+   + +++   +   H+    + L+HLE+                 V KVP
Sbjct: 415 N----QTEKDSNSGLLDHFCLSLTHRIFSNRVLVHLESV----------------VCKVP 474

Query: 181 FLQLISHPTWNSRKSSWTFFMEVPRSILHPNSIQARTSDSHQMNNVTKTQFLTKVVVNDD 240
           +L LISHPTWNSR SSWT FM VP SI+     + ++ D  +     KTQF TKVVV DD
Sbjct: 475 YLHLISHPTWNSRTSSWTVFMTVPPSIIPQGRSETQSPDGKRN---LKTQFRTKVVVKDD 534

Query: 241 CITIEGEGAPNVVGLFNGNSKDIYSMNKYGCDLADLLVTILLQVASQTILWLHEEALTWG 300
           CI++E E  PNVVGL   +S +++S+NKY CD+ADL V IL QVASQ + WL EEA T G
Sbjct: 535 CISVEAECTPNVVGLLKSSSCNLFSINKYECDVADLPVMILQQVASQIVCWLLEEARTVG 594

Query: 301 IKANRDFLSLSFELEQGETFRLVAMWTQKILKDAFPG--VMDDDLMEDRKLNFDSSDVVP 360
            KA+R+FLSLS E+ +GE   LVA    +  K       VM++   E+R       + V 
Sbjct: 595 TKASREFLSLSLEIVEGERVSLVAHVNPEDAKGCISWWLVMENGCTEER-------EGVS 643

Query: 361 EYRKFLGHLSLEVLHSTLMDLVSLC 380
           E RK LGHLSL+VL+S LMDL++LC
Sbjct: 655 ESRKLLGHLSLDVLYSVLMDLINLC 643

[Close]

BLAST of Lsi08G000660 vs. NCBI nr
Match: gi|659119352|ref|XP_008459609.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 17 [Cucumis melo])

HSP 1 Score: 513.1 bits (1320), Expect = 4.3e-142
Identity = 284/391 (72.63%), Postives = 304/391 (77.75%), Query Frame = 1


Query: 1   VFDLVNRETFNPSLGINVTGIRENYLQLSIDQGTSVFISLVLSGQSCQTVEGANTGILDN 60
           VFDLVN E FNPS+GINVTGIRENYLQLSIDQGTSVFISLV SGQSCQTVEGAN+ ILDN
Sbjct: 292 VFDLVNHEAFNPSVGINVTGIRENYLQLSIDQGTSVFISLVPSGQSCQTVEGANSEILDN 351

Query: 61  ANLPFDSLDEIELPDRSDPLEKKLRNPNHITFDRPISLLSRQSGQGSNDGSGLLEAIHVE 120
           ANLPFDSLD IELPDRSDPLEKKLRNPNHITF+                    L+ I  E
Sbjct: 352 ANLPFDSLDGIELPDRSDPLEKKLRNPNHITFEI------------------YLQQIFHE 411

Query: 121 DVVVVEDEEVEETMIIEMVEIQKIHKKALLHLEAEEAEE---EEVLAETKEVVEVWKVPF 180
            V V  ++    ++  +  ++       L H     A       VL E + V  VWKVPF
Sbjct: 412 LVFVKSNDRPISSLSRQSGQVSNDGSGLLGHFCLSLAHRMFANNVLMELENV--VWKVPF 471

Query: 181 LQLISHPTWNSRKSSWTFFMEVPRSILHPNSIQARTSDSHQMNNVTKTQFLTKVVVNDDC 240
           LQLISHPTWNSRKSSWTFFMEVPRSILHPNSIQARTSDS+QMNNVTKTQFLTKVVVNDDC
Sbjct: 472 LQLISHPTWNSRKSSWTFFMEVPRSILHPNSIQARTSDSYQMNNVTKTQFLTKVVVNDDC 531

Query: 241 ITIEGEGAPNVVGLFNGNSKDIYSMNKYGCDLADLLVTILLQVASQTILWLHEEALTWGI 300
           ITIEGEGAPNVVGLFNGNSKDIY  N+Y CDLADL V ILLQVASQ ILWLHEEALTWGI
Sbjct: 532 ITIEGEGAPNVVGLFNGNSKDIYLTNRYSCDLADLPVIILLQVASQIILWLHEEALTWGI 591

Query: 301 KANRDFLSLSFELEQGETFRLVAMWTQKILKDAFPG--VMDDDLMEDRKLNFDSSDVVPE 360
           KANRDFLSLSFELEQGET RLVA    +  +       VMDD LMEDRKLNF++SDVVPE
Sbjct: 592 KANRDFLSLSFELEQGETLRLVAHVDPEDPQGCLSWWLVMDDGLMEDRKLNFETSDVVPE 651

Query: 361 YRKFLGHLSLEVLHSTLMDLVSLCNGVGGRL 387
           YRKFLG+LSLEVLHSTLMDLVSLC+GVGG L
Sbjct: 652 YRKFLGNLSLEVLHSTLMDLVSLCSGVGGSL 662

[Close]

BLAST of Lsi08G000660 vs. NCBI nr
Match: gi|449447591|ref|XP_004141551.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 17 [Cucumis sativus])

HSP 1 Score: 502.7 bits (1293), Expect = 5.8e-139
Identity = 279/391 (71.36%), Postives = 302/391 (77.24%), Query Frame = 1


Query: 1   VFDLVNRETFNPSLGINVTGIRENYLQLSIDQGTSVFISLVLSGQSCQTVEGANTGILDN 60
           VFDLVN+E FNPS+GINVTGIRENYLQLSIDQGTSVFISLV SGQS QTVEGAN+ IL+N
Sbjct: 292 VFDLVNQEAFNPSVGINVTGIRENYLQLSIDQGTSVFISLVPSGQSSQTVEGANSEILEN 351

Query: 61  ANLPFDSLDEIELPDRSDPLEKKLRNPNHITFDRPISLLSRQSGQGSNDGSGLLEAIHVE 120
           A+LPFDSLD IELPDRSDPLEKKLRNPNHITF+                    L+ I  E
Sbjct: 352 ASLPFDSLDGIELPDRSDPLEKKLRNPNHITFEI------------------YLQQIFHE 411

Query: 121 DVVVVEDEEVEETMIIEMVEIQKIHKKALLHLEAEEAEE---EEVLAETKEVVEVWKVPF 180
            V V  ++    ++  +  ++       L H     A       VL E + V  VWKVPF
Sbjct: 412 LVFVKSNDRPISSLSRQSGQVSNDGSGLLGHFCLSLAHRMFANNVLMELENV--VWKVPF 471

Query: 181 LQLISHPTWNSRKSSWTFFMEVPRSILHPNSIQARTSDSHQMNNVTKTQFLTKVVVNDDC 240
           LQLISHPTWNSRKSSWTFFMEVP SILHPNSI+ARTSD +QMNNVTKTQFLTKVVVNDDC
Sbjct: 472 LQLISHPTWNSRKSSWTFFMEVPWSILHPNSIKARTSDGYQMNNVTKTQFLTKVVVNDDC 531

Query: 241 ITIEGEGAPNVVGLFNGNSKDIYSMNKYGCDLADLLVTILLQVASQTILWLHEEALTWGI 300
           ITIEGEGAPNVVGLFNGNSKDIYS N+Y CDLADL V ILLQVASQ ILWLHEEAL WGI
Sbjct: 532 ITIEGEGAPNVVGLFNGNSKDIYSTNRYSCDLADLPVIILLQVASQIILWLHEEALIWGI 591

Query: 301 KANRDFLSLSFELEQGETFRLVAMWTQKILKDAFPG--VMDDDLMEDRKLNFDSSDVVPE 360
           KANRDFLSLSFELEQGET RLVA    +  +       VMDD LMEDRKLNF++SDVVPE
Sbjct: 592 KANRDFLSLSFELEQGETLRLVAHVDPEDPQGCLSWWLVMDDGLMEDRKLNFETSDVVPE 651

Query: 361 YRKFLGHLSLEVLHSTLMDLVSLCNGVGGRL 387
           YRKFLGHLSLEVLHSTLMDLVSLC+GVGG L
Sbjct: 652 YRKFLGHLSLEVLHSTLMDLVSLCSGVGGSL 662

[Close]

BLAST of Lsi08G000660 vs. NCBI nr
Match: gi|1009133312|ref|XP_015883833.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 17-like isoform X1 [Ziziphus jujuba])

HSP 1 Score: 328.2 bits (840), Expect = 2.0e-86
Identity = 205/386 (53.11%), Postives = 242/386 (62.69%), Query Frame = 1


Query: 1   VFDLVNRETFNPSLGINVTGIRENYLQLSIDQGTSVFISLVLSGQSCQTVEGANTGILDN 60
           VFDLVNRE FN SLG NVTGIRENYLQLSI Q  SVFISLV SGQ  QTV GA TG L+N
Sbjct: 291 VFDLVNREAFNQSLGANVTGIRENYLQLSIGQEYSVFISLVPSGQGDQTVNGAGTGDLEN 350

Query: 61  ANLPFDSLDEIELPDRSDPLEKKLRNPNHITFDRPISLLSRQSGQGSNDGSGLLEAIHVE 120
           A LP D+LD ++LPD      KK   PN I+++                   L +  H  
Sbjct: 351 AILPLDTLDGVKLPDEKPDTFKKSGIPNSISYE-----------------IYLQQIFHDH 410

Query: 121 DVVVVEDEEVEETMIIEMVEIQKIHKKALLHL---EAEEAEEEEVLAETKEVVEVWKVPF 180
             V   D+ V  +      +  K H   L H     A      +VL E + VV    V +
Sbjct: 411 VFVRATDKPVSSSTPHLSGQSAKEHSGLLGHFCMSLAHRIFSNKVLMELENVVS--GVQY 470

Query: 181 LQLISHPTWNSRKSSWTFFMEVPRSILHPNSIQARTSDSHQMNNVTKTQFLTKVVVNDDC 240
           LQLISHPTW+SR SSWT  M +P SILH    Q  TS+ +   NVTKT F TKVVV +DC
Sbjct: 471 LQLISHPTWHSRTSSWTLVMNIPESILHA-GCQNLTSELNHTKNVTKTLFRTKVVVINDC 530

Query: 241 ITIEGEGAPNVVGLFNGNSKDIYSMNKYGCDLADLLVTILLQVASQTILWLHEEALTWGI 300
           I IEG+GAPNV+G F GN+++  SMN+Y CDLADL + IL QVASQ I WLHEEAL  GI
Sbjct: 531 IHIEGKGAPNVIGPFKGNTQEKSSMNRYECDLADLPLIILQQVASQIIRWLHEEALMVGI 590

Query: 301 KANRDFLSLSFELEQGETFRLVAMWTQKILKDAFPG--VMDDDLMEDRKLNFDSSDVVPE 360
           K NRDFL LSFEL+QGET  L+A    +  +       VM+D L E+RKL+ D SD   E
Sbjct: 591 KVNRDFLCLSFELDQGETVSLLAHVDPEDAQGCISWWLVMEDGLAEERKLHMDISDGSSE 650

Query: 361 YRKFLGHLSLEVLHSTLMDLVSLCNG 382
           YRKFLG+LSL+VL+STLMDLVSLC+G
Sbjct: 651 YRKFLGYLSLDVLYSTLMDLVSLCSG 656

[Close]

BLAST of Lsi08G000660 vs. NCBI nr
Match: gi|225445450|ref|XP_002285089.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 17 [Vitis vinifera])

HSP 1 Score: 327.8 bits (839), Expect = 2.6e-86
Identity = 199/391 (50.90%), Postives = 243/391 (62.15%), Query Frame = 1


Query: 1   VFDLVNRETFNPSLGINVTGIRENYLQLSIDQGTSVFISLVLSGQSCQTVEGANTGILDN 60
           VFDLVNRE FN S G+NVTGIRENYLQL+I QG SVF+SLV SGQ  +T +G     L++
Sbjct: 290 VFDLVNREAFNSSSGVNVTGIRENYLQLNIGQGASVFMSLVPSGQDEKTADGMGMQNLES 349

Query: 61  ANLPFDSLDEIELPD-RSDPLEKKLRNPNHITFDRPISLLSRQSGQGSNDGSGLLEAIHV 120
           A LP D+ D ++L D + D  +KK   PN I+ +  +  L                  H 
Sbjct: 350 AILPMDTFDGVKLSDGKHDNDKKKSGFPNRISSEIYLKQL-----------------FHE 409

Query: 121 EDVVVVEDEEVEETMIIEMVEIQKIHKKALLHL---EAEEAEEEEVLAETKEVVEVWKVP 180
              V  +D+ +         +  K     L H     A      +VL E + +V   +VP
Sbjct: 410 HVFVRAKDKHISAGRTQPSSQPAKDGFGLLGHFCMSLAHRIFSSKVLMELENLVS--RVP 469

Query: 181 FLQLISHPTWNSRKSSWTFFMEVPRSILHPNSIQARTSDSHQMNNVTKTQFLTKVVVNDD 240
           +L L+SHPTW+SR SSWT  M+VP S  HP   Q RTSD H + N+ KT F TKVV+NDD
Sbjct: 470 YLHLLSHPTWHSRTSSWTLLMKVPESSFHP-GCQTRTSDIHNVKNIIKTHFRTKVVINDD 529

Query: 241 CITIEGEGAPNVVGLFNGNSKDIYSMNKYGCDLADLLVTILLQVASQTILWLHEEALTWG 300
           CI +EG+GAPNVVGLF G+S+D+ SMN+Y CDLAD+ V +L QVASQ I WLHEEAL  G
Sbjct: 530 CINVEGDGAPNVVGLFKGSSEDVCSMNRYDCDLADIPVILLQQVASQVIRWLHEEALKVG 589

Query: 301 IKANRDFLSLSFELEQGETFRLVAMWTQKILKDAFPG--VMDDDLMEDRKLNFDSSDVVP 360
           IKANRDFL LSFE++QGE   LVA       +       VMDD   ED K + D+ D   
Sbjct: 590 IKANRDFLCLSFEMDQGEMLSLVAHVNPDDPQGCISWWLVMDDGFSEDLKFHTDAPDGGS 649

Query: 361 EYRKFLGHLSLEVLHSTLMDLVSLCNGVGGR 386
           EYRKFLGHLSLEVL+STLMDLVSLCNG GGR
Sbjct: 650 EYRKFLGHLSLEVLYSTLMDLVSLCNG-GGR 659

[Close]

BLAST of Lsi08G000660 vs. NCBI nr
Match: gi|1009170839|ref|XP_015866413.1| (PREDICTED: mediator of RNA polymerase II transcription subunit 17 isoform X1 [Ziziphus jujuba])

HSP 1 Score: 325.5 bits (833), Expect = 1.3e-85
Identity = 204/386 (52.85%), Postives = 241/386 (62.44%), Query Frame = 1


Query: 1   VFDLVNRETFNPSLGINVTGIRENYLQLSIDQGTSVFISLVLSGQSCQTVEGANTGILDN 60
           VFDLVNRE FN SLG NVTGIRENYLQLSI Q  SVFISLV SGQ  QTV GA T  L+N
Sbjct: 291 VFDLVNREAFNQSLGANVTGIRENYLQLSIGQEYSVFISLVPSGQGDQTVNGAGTDDLEN 350

Query: 61  ANLPFDSLDEIELPDRSDPLEKKLRNPNHITFDRPISLLSRQSGQGSNDGSGLLEAIHVE 120
           A LP D+LD ++LPD      KK   PN I+++                   L +  H  
Sbjct: 351 AILPLDTLDGVKLPDEKPDTFKKSGIPNSISYE-----------------IYLQQIFHDH 410

Query: 121 DVVVVEDEEVEETMIIEMVEIQKIHKKALLHL---EAEEAEEEEVLAETKEVVEVWKVPF 180
             V   D+ V  +      +  K H   L H     A      +VL E + VV    V +
Sbjct: 411 VFVRATDKPVSSSTPHLSGQSAKEHSGLLGHFCMSLAHRIFSNKVLMELENVVS--GVQY 470

Query: 181 LQLISHPTWNSRKSSWTFFMEVPRSILHPNSIQARTSDSHQMNNVTKTQFLTKVVVNDDC 240
           LQLISHPTW+SR SSWT  M +P SILH    Q  TS+ +   NVTKT F TKVVV +DC
Sbjct: 471 LQLISHPTWHSRTSSWTLVMNIPESILHA-GCQNLTSELNHTKNVTKTLFRTKVVVINDC 530

Query: 241 ITIEGEGAPNVVGLFNGNSKDIYSMNKYGCDLADLLVTILLQVASQTILWLHEEALTWGI 300
           I IEG+GAPNV+G F GN+++  SMN+Y CDLADL + IL QVASQ I WLHEEAL  GI
Sbjct: 531 IHIEGKGAPNVIGPFKGNTQEKSSMNRYECDLADLPLIILQQVASQIIRWLHEEALMVGI 590

Query: 301 KANRDFLSLSFELEQGETFRLVAMWTQKILKDAFPG--VMDDDLMEDRKLNFDSSDVVPE 360
           K NRDFL LSFEL+QGET  L+A    +  +       VM+D L E+RKL+ D SD   E
Sbjct: 591 KVNRDFLCLSFELDQGETVSLLAHVDPEDAQGCISWWLVMEDGLAEERKLHMDISDGSSE 650

Query: 361 YRKFLGHLSLEVLHSTLMDLVSLCNG 382
           YRKFLG+LSL+VL+STLMDLVSLC+G
Sbjct: 651 YRKFLGYLSLDVLYSTLMDLVSLCSG 656

The following BLAST results are available for this feature:

BLAST of Lsi08G000660 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MED17_ARATH	1.3e-61	39.22	Mediator of RNA polymerase II transcription subunit 17 OS=Arabidopsis thaliana G...	[more]

BLAST of Lsi08G000660 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KXX2_CUCSA	4.1e-139	71.36	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G650410 PE=4 SV=1	[more]
A5BHH4_VITVI	1.8e-86	50.90	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0016g05020 PE=4 SV=...	[more]
M5VWL4_PRUPE	7.5e-85	51.93	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002594mg PE=4 SV=1	[more]
A0A067K814_JATCU	1.6e-82	50.39	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13306 PE=4 SV=1	[more]
W9RGP1_9ROSA	2.0e-82	49.74	Uncharacterized protein OS=Morus notabilis GN=L484_006289 PE=4 SV=1	[more]

BLAST of Lsi08G000660 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G20170.1	7.2e-63	39.22	RNA polymerase II transcription mediators	[more]

BLAST of Lsi08G000660 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659119352\|ref\|XP_008459609.1\|	4.3e-142	72.63	PREDICTED: mediator of RNA polymerase II transcription subunit 17 [Cucumis melo]	[more]
gi\|449447591\|ref\|XP_004141551.1\|	5.8e-139	71.36	PREDICTED: mediator of RNA polymerase II transcription subunit 17 [Cucumis sativ...	[more]
gi\|1009133312\|ref\|XP_015883833.1\|	2.0e-86	53.11	PREDICTED: mediator of RNA polymerase II transcription subunit 17-like isoform X...	[more]
gi\|225445450\|ref\|XP_002285089.1\|	2.6e-86	50.90	PREDICTED: mediator of RNA polymerase II transcription subunit 17 [Vitis vinifer...	[more]
gi\|1009170839\|ref\|XP_015866413.1\|	1.3e-85	52.85	PREDICTED: mediator of RNA polymerase II transcription subunit 17 isoform X1 [Zi...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription from RNA polymerase II promoter
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016592	mediator complex
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0001104	RNA polymerase II transcription cofactor activity
molecular_function	GO:0003712	transcription cofactor activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi08G000660.1	Lsi08G000660.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 149..169 scor
None	No IPR available	PANTHER	PTHR13114	TRANSCRIPTIONAL CO-ACTIVATOR CRSP77-RELATED	coord: 1..112 score: 1.3E-47coord: 133..386 score: 1.3
None	No IPR available	PANTHER	PTHR13114:SF7	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 17	coord: 1..112 score: 1.3E-47coord: 133..386 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi08G000660	Csa5G650410	Cucumber (Chinese Long) v2	culsiB391
Lsi08G000660	Cla012470	Watermelon (97103) v1	lsiwmB467
Lsi08G000660	MELO3C022187	Melon (DHL92) v3.5.1	lsimeB461
Lsi08G000660	ClCG08G000940	Watermelon (Charleston Gray)	lsiwcgB440
Lsi08G000660	MELO3C022187.2	Melon (DHL92) v3.6.1	lsimedB479
Lsi08G000660	Cla97C08G145320	Watermelon (97103) v2	lsiwmbB445
Lsi08G000660	Bhi06G000030	Wax gourd	lsiwgoB589
Lsi08G000660	CsaV3_5G040100	Cucumber (Chinese Long) v3	cuclsiB414

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi08G000660	Cucurbita maxima (Rimu)	cmalsiB033
Lsi08G000660	Cucurbita maxima (Rimu)	cmalsiB453
Lsi08G000660	Cucurbita moschata (Rifu)	cmolsiB025
Lsi08G000660	Cucurbita moschata (Rifu)	cmolsiB440
Lsi08G000660	Cucurbita pepo (Zucchini)	cpelsiB479
Lsi08G000660	Cucurbita pepo (Zucchini)	cpelsiB650
Lsi08G000660	Wild cucumber (PI 183967)	cpilsiB395
Lsi08G000660	Cucumber (Gy14) v2	cgyblsiB358
Lsi08G000660	Melon (DHL92) v3.6.1	lsimedB480
Lsi08G000660	Cucumber (Gy14) v1	cgylsiB389