Lsi08G000020 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi08G000020
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionDNA-binding storekeeper protein-related transcriptional regulator
Locationchr08 : 83534 .. 84175 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGGCTCAGACAAATCAGATGGAGAGTACAAAATAGAGTTGGAAGTGGAAAGTAGTGAAGAATATTCAGAATATTGTCGGTCAAAAAGAAGGAATGCGCAAAGAAGAAAAAAGAGATCATCATCAGGTGGAGTATTGGAATGGGAGGAAGATGATGAAATCACTTTGTTGAAACAACTCTATGAATTCTCAGCTGGTAGCTGCAAGGGTTTGTATTCAAAGGCATTTTATGAATATGTGAAGCCAAGCTTAAGGAACAAGGAAGTGACGATGAGTGAAATGAGAGGCAAAATTGGTGGATTCAAAAACCAATATTTGGAGTGGAGAAGGAAAGGCAATAATAATAATAATAATCATGAATTGAAATTGTCAGGGCCTCACCAACGCCAAGTGCTTGTGCTATCGAAGAGAATATGGGGAGATTATGATGGGGGAATGAAGCATTTGGAAGGATTTAGGGAGTTTCTTGGAGAGATGGAGATTGATATCAATTGTTTGATGCCTTCATCTTTGGAATATCTTAAGAAAGAGTGGGAAGTTCAAATGCTTATGTACATTCAGCTTTTGTCAATCAAGTCCAACTTTGATGCTAAGCTTAGGGGATTGATCATGTATGCCAAATCTGATTCAAACACCTAA

mRNA sequence

ATGTCGGGCTCAGACAAATCAGATGGAGAGTACAAAATAGAGTTGGAAGTGGAAAGTAGTGAAGAATATTCAGAATATTGTCGGTCAAAAAGAAGGAATGCGCAAAGAAGAAAAAAGAGATCATCATCAGGTGGAGTATTGGAATGGGAGGAAGATGATGAAATCACTTTGTTGAAACAACTCTATGAATTCTCAGCTGGTAGCTGCAAGGGTTTGTATTCAAAGGCATTTTATGAATATGTGAAGCCAAGCTTAAGGAACAAGGAAGTGACGATGAGTGAAATGAGAGGCAAAATTGGTGGATTCAAAAACCAATATTTGGAGTGGAGAAGGAAAGGCAATAATAATAATAATAATCATGAATTGAAATTGTCAGGGCCTCACCAACGCCAAGTGCTTGTGCTATCGAAGAGAATATGGGGAGATTATGATGGGGGAATGAAGCATTTGGAAGGATTTAGGGAGTTTCTTGGAGAGATGGAGATTGATATCAATTGTTTGATGCCTTCATCTTTGGAATATCTTAAGAAAGAGTGGGAAGTTCAAATGCTTATGTACATTCAGCTTTTGTCAATCAAGTCCAACTTTGATGCTAAGCTTAGGGGATTGATCATGTATGCCAAATCTGATTCAAACACCTAA

Coding sequence (CDS)

ATGTCGGGCTCAGACAAATCAGATGGAGAGTACAAAATAGAGTTGGAAGTGGAAAGTAGTGAAGAATATTCAGAATATTGTCGGTCAAAAAGAAGGAATGCGCAAAGAAGAAAAAAGAGATCATCATCAGGTGGAGTATTGGAATGGGAGGAAGATGATGAAATCACTTTGTTGAAACAACTCTATGAATTCTCAGCTGGTAGCTGCAAGGGTTTGTATTCAAAGGCATTTTATGAATATGTGAAGCCAAGCTTAAGGAACAAGGAAGTGACGATGAGTGAAATGAGAGGCAAAATTGGTGGATTCAAAAACCAATATTTGGAGTGGAGAAGGAAAGGCAATAATAATAATAATAATCATGAATTGAAATTGTCAGGGCCTCACCAACGCCAAGTGCTTGTGCTATCGAAGAGAATATGGGGAGATTATGATGGGGGAATGAAGCATTTGGAAGGATTTAGGGAGTTTCTTGGAGAGATGGAGATTGATATCAATTGTTTGATGCCTTCATCTTTGGAATATCTTAAGAAAGAGTGGGAAGTTCAAATGCTTATGTACATTCAGCTTTTGTCAATCAAGTCCAACTTTGATGCTAAGCTTAGGGGATTGATCATGTATGCCAAATCTGATTCAAACACCTAA

Protein sequence

MSGSDKSDGEYKIELEVESSEEYSEYCRSKRRNAQRRKKRSSSGGVLEWEEDDEITLLKQLYEFSAGSCKGLYSKAFYEYVKPSLRNKEVTMSEMRGKIGGFKNQYLEWRRKGNNNNNNHELKLSGPHQRQVLVLSKRIWGDYDGGMKHLEGFREFLGEMEIDINCLMPSSLEYLKKEWEVQMLMYIQLLSIKSNFDAKLRGLIMYAKSDSNT
Homology
The following BLAST results are available for this feature:
BLAST of Lsi08G000020 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi08G000020 vs. TrEMBL
Match NameE-valueIdentityDescription
BLAST of Lsi08G000020 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi08G000020 vs. NCBI nr
Match NameE-valueIdentityDescription
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007592GEBP
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi08G000020.1Lsi08G000020.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007592Protein of unknown function DUF573PFAMPF04504DUF573coord: 49..141
score: 3.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi08G000020Cla003844Watermelon (97103) v1lsiwmB469
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None