Lsi07G014850 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi07G014850
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	NAD(P)-binding Rossmann-fold superfamily protein
Location	chr07 : 21673166 .. 21674540 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACCAAAACAACTTCAAACTTCCACAAAAGCTAACAAAATGCAAGGAAAGAAAAAAAGTACGACCGAACTAAATGAGTAATTATCTCGTTCTTTTGTAAATTTTCTAAACTGAAGTGAATGAGTAATAAGAAGAAAGAAAAAGAGTGATTAGAGAAAAGCAACACATAACAGAAAAAAATCGCCATAAACAAAGAAAGAAGAATGGTTGAGAGCAGAGAAATTACCAGTGGATTCCCGTTCAGAAGTCGTAGCCACCGTCCCTCCTAGCCGCTTCCAAGTAGTAGCTTCCGTCCGTCGAAGACACCTTTCGAAGTTCTAGTCGCTGCCGGTCGTCGAAGTCGCAGTTTGGAAGTTGTACGTCGCCGGTCGTCGAAGTCGCAGCTCGGAAGTTGTACGTCGCCGGTCGTCGAAGTGGCAAAGGGAGAAGAGTTGAACCATGACGGAGAAGCGCTGGCATTGCTATCGAAGCCACCGCCTGGCGCTACTGTCGTGAGGGAGAAGAAGCCGGACGTCGAAGTCACCACCTTCGAAGATGGTGAGCCGCCACCGATGTCTCACCGTCTGATGGAAGTTGGAAGATCGATGGAGTGCTGGTGCTTGGGCTCGCGCACGATGGAGAGGAAATCGTGAGTTGCGAGGGAGAGGTAATCGTGACTATTCAATGTTTTAGGGCTGTTTTATCCCGGGGTAATTTGGACATTTCATATGTCCGTTTGGCTCACAACTCTTCCCTTTTTAAAATTGATCCTAAAAGTCCTTGGAACTGTCCTATTTTTTGCAATTTTCCTCATTCAGGCGAACTTCCAGTGTCCACGAATTGAAGCTTCATTTGCGCTTACTTTACAGATGGAGAGAGCTACCAAGAACGTGTTGCTTTCTTCCAATGGAGATGAGATATCCACCAGTCTGGCTAAACATCTTGCCAGAAGGGGTTGCAGGTTTAGCACTGAACTTTGAACTTTGTGGCTTTATGTGTTTGTTTACTGAGGAAATTAAGGGGAATGGAGGGCGTTAATGAAACTTTTGGTTATTGGGTTTTTTCTTTTTCTTCTCTCTTCTGTTTTGTTTGCCTCTGCAATGTTTTTTCATTTTTTTTTCCCTTGCTTTTCATCAGTTGTTAACCTTGTATACTTCTTTTTCATGGCTGTGTTTAGATTGGTTTTGTTGGGAAATGAGACTGTTCTTCGGAGATCGAGTAAGGACATAGTGGAATCCTTAAAGGGTGTCCTGCCAATTGAGGTTGTTGGCTTGGACATGGAAGAAGAGGGAGAGGTGGCTTTTGATGAGGCTGTGAACAGGGCATCTAGTATTTTGGGAACTTTGGATGCTTTTGTCCATGCTTATTCTTATGATGGTACGCCCTATCTCTAA

mRNA sequence

ATGAACCAAAACAACTTCAAACTTCCACAAAAGCTAACAAAATGCAAGGAAAGAAAAAAACCGCTTCCAAGTAGTAGCTTCCGTCCGTCGAAGACACCTTTCGAAGTTCTAGTCGCTGCCGGTCGTCGAAGTCGCAGTTTGGAAGTTGTACGTCGCCGGTCGTCGAAGTCGCAGCTCGGAAGTTGTACGTCGCCGGTCGTCGAAGTGGCAAAGGGAGAAGAGTTGAACCATGACGGAGAAGCGCTGGCATTGCTATCGAAGCCACCGCCTGGCGCTACTGTCGTGAGGGAGAAGAAGCCGGACGTCGAAGTCACCACCTTCGAAGATGGTGAGCCGCCACCGATGTCTCACCGTCTGATGGAAGTTGGAAGATCGATGGAGTGCTGGTGCTTGGGCTCGCGCACGATGGAGAGGAAATCATGGAGAGAGCTACCAAGAACGTGTTGCTTTCTTCCAATGGAGATGAGATATCCACCAGTCTGGCTAAACATCTTGCCAGAAGGGGTTGCAGGTTTAGCACTGAACTTTGAACTTTGTGGCTTTATATTGGTTTTGTTGGGAAATGAGACTGTTCTTCGGAGATCGAGTAAGGACATAGTGGAATCCTTAAAGGGTGTCCTGCCAATTGAGGTTGTTGGCTTGGACATGGAAGAAGAGGGAGAGGTGGCTTTTGATGAGGCTGTGAACAGGGCATCTAGTATTTTGGGAACTTTGGATGCTTTTGTCCATGCTTATTCTTATGATGGTACGCCCTATCTCTAA

Coding sequence (CDS)

ATGAACCAAAACAACTTCAAACTTCCACAAAAGCTAACAAAATGCAAGGAAAGAAAAAAACCGCTTCCAAGTAGTAGCTTCCGTCCGTCGAAGACACCTTTCGAAGTTCTAGTCGCTGCCGGTCGTCGAAGTCGCAGTTTGGAAGTTGTACGTCGCCGGTCGTCGAAGTCGCAGCTCGGAAGTTGTACGTCGCCGGTCGTCGAAGTGGCAAAGGGAGAAGAGTTGAACCATGACGGAGAAGCGCTGGCATTGCTATCGAAGCCACCGCCTGGCGCTACTGTCGTGAGGGAGAAGAAGCCGGACGTCGAAGTCACCACCTTCGAAGATGGTGAGCCGCCACCGATGTCTCACCGTCTGATGGAAGTTGGAAGATCGATGGAGTGCTGGTGCTTGGGCTCGCGCACGATGGAGAGGAAATCATGGAGAGAGCTACCAAGAACGTGTTGCTTTCTTCCAATGGAGATGAGATATCCACCAGTCTGGCTAAACATCTTGCCAGAAGGGGTTGCAGGTTTAGCACTGAACTTTGAACTTTGTGGCTTTATATTGGTTTTGTTGGGAAATGAGACTGTTCTTCGGAGATCGAGTAAGGACATAGTGGAATCCTTAAAGGGTGTCCTGCCAATTGAGGTTGTTGGCTTGGACATGGAAGAAGAGGGAGAGGTGGCTTTTGATGAGGCTGTGAACAGGGCATCTAGTATTTTGGGAACTTTGGATGCTTTTGTCCATGCTTATTCTTATGATGGTACGCCCTATCTCTAA

Protein sequence

MNQNNFKLPQKLTKCKERKKPLPSSSFRPSKTPFEVLVAAGRRSRSLEVVRRRSSKSQLGSCTSPVVEVAKGEELNHDGEALALLSKPPPGATVVREKKPDVEVTTFEDGEPPPMSHRLMEVGRSMECWCLGSRTMERKSWRELPRTCCFLPMEMRYPPVWLNILPEGVAGLALNFELCGFILVLLGNETVLRRSSKDIVESLKGVLPIEVVGLDMEEEGEVAFDEAVNRASSILGTLDAFVHAYSYDGTPYL

Homology

[Close]

BLAST of Lsi07G014850 vs. TrEMBL
Match: Q2PZA4_CUCME (Putative alcohol dehydrogenases OS=Cucumis melo GN=ADH2 PE=2 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.3e-21
Identity = 59/78 (75.64%), Postives = 64/78 (82.05%), Query Frame = 1


Query: 172 LALNFELCGFILVLLGNETVLRRSSKDIVESLKGVLPIEVVGLDMEEEGEVAFDEAVNRA 231
           LAL+    G  LVL+GNE VL+  SK I ESLKGVLPIEVVGLDMEEE E AFDEAVNRA
Sbjct: 21  LALHLARRGCRLVLIGNECVLQSMSKMIAESLKGVLPIEVVGLDMEEEREAAFDEAVNRA 80

Query: 232 SSILGTLDAFVHAYSYDG 250
            S+LGTLDAFVHAYSY+G
Sbjct: 81  CSVLGTLDAFVHAYSYEG 98

[Close]

BLAST of Lsi07G014850 vs. TrEMBL
Match: A0A0A0L8L9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G566330 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.1e-20
Identity = 58/78 (74.36%), Postives = 63/78 (80.77%), Query Frame = 1


Query: 172 LALNFELCGFILVLLGNETVLRRSSKDIVESLKGVLPIEVVGLDMEEEGEVAFDEAVNRA 231
           LAL+    G  LVL+GNE VL+  SK I ESLKGVLPIEVVG+DMEEE E AFDEAVNRA
Sbjct: 21  LALHLARRGCRLVLIGNECVLQSMSKMIAESLKGVLPIEVVGVDMEEEREAAFDEAVNRA 80

Query: 232 SSILGTLDAFVHAYSYDG 250
             ILGTLDAFVHAYSY+G
Sbjct: 81  CGILGTLDAFVHAYSYEG 98

[Close]

BLAST of Lsi07G014850 vs. TrEMBL
Match: A5BTT7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_024278 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 7.0e-15
Identity = 44/80 (55.00%), Postives = 58/80 (72.50%), Query Frame = 1


Query: 170 AGLALNFELCGFILVLLGNETVLRRSSKDIVESLKGVLPIEVVGLDMEEEGEVAFDEAVN 229
           A +A +    G  LVL+GNE+ LR+ +++I+ S+KG  P+EVVG+DMEEE E  FDEAV 
Sbjct: 19  ANIAFHLAKRGCRLVLMGNESALRKIAEEIMGSIKGAAPVEVVGMDMEEEKESVFDEAVG 78

Query: 230 RASSILGTLDAFVHAYSYDG 250
           RA+  LG LDA VH YSY+G
Sbjct: 79  RATMWLGKLDALVHCYSYEG 98

[Close]

BLAST of Lsi07G014850 vs. TrEMBL
Match: D7SVM9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0068g01760 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 7.0e-15
Identity = 44/80 (55.00%), Postives = 58/80 (72.50%), Query Frame = 1


Query: 170 AGLALNFELCGFILVLLGNETVLRRSSKDIVESLKGVLPIEVVGLDMEEEGEVAFDEAVN 229
           A +A +    G  LVL+GNE+ LR+ +++I+ S+KG  P+EVVG+DMEEE E  FDEAV 
Sbjct: 19  ANIAFHLAKRGCRLVLMGNESALRKIAEEIMGSIKGAAPVEVVGMDMEEEKESVFDEAVG 78

Query: 230 RASSILGTLDAFVHAYSYDG 250
           RA+  LG LDA VH YSY+G
Sbjct: 79  RATMWLGKLDALVHCYSYEG 98

[Close]

BLAST of Lsi07G014850 vs. TrEMBL
Match: U5FLC4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s09760g PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 6.6e-13
Identity = 40/70 (57.14%), Postives = 51/70 (72.86%), Query Frame = 1


Query: 180 GFILVLLGNETVLRRSSKDIVESLKGVLPIEVVGLDMEEEGEVAFDEAVNRASSILGTLD 239
           G  LVL+GNE VLR   + I  ++KG  P+E V +DMEEE E +FDEAV++A  ILG LD
Sbjct: 29  GCRLVLMGNEKVLRSIGEKITGAVKGAFPVEAVEMDMEEEREASFDEAVDKACIILGNLD 88

Query: 240 AFVHAYSYDG 250
           AFVH Y+Y+G
Sbjct: 89  AFVHCYTYEG 98

[Close]

BLAST of Lsi07G014850 vs. TAIR10
Match: AT3G01980.3 (AT3G01980.3 NAD(P)-binding Rossmann-fold superfamily protein)

HSP 1 Score: 63.5 bits (153), Expect = 2.1e-10
Identity = 32/78 (41.03%), Postives = 48/78 (61.54%), Query Frame = 1


Query: 172 LALNFELCGFILVLLGNETVLRRSSKDIVESLKGVLPIEVVGLDMEEEGEVAFDEAVNRA 231
           +A +    G  LV++GNE  LR     I +S++G  P +V+ LDME + EVAF  AV +A
Sbjct: 21  IAFHLAKHGCKLVMMGNEGSLRSIVDKIRDSIEGAFPADVIALDMESDSEVAFHAAVQKA 80

Query: 232 SSILGTLDAFVHAYSYDG 250
             + G  DAF+++Y+Y G
Sbjct: 81  WELSGHFDAFLNSYTYQG 98

[Close]

BLAST of Lsi07G014850 vs. NCBI nr
Match: gi|661902990|ref|NP_001284466.1| (carbonyl reductase [NADPH])

HSP 1 Score: 110.9 bits (276), Expect = 3.2e-21
Identity = 59/78 (75.64%), Postives = 64/78 (82.05%), Query Frame = 1


Query: 172 LALNFELCGFILVLLGNETVLRRSSKDIVESLKGVLPIEVVGLDMEEEGEVAFDEAVNRA 231
           LAL+    G  LVL+GNE VL+  SK I ESLKGVLPIEVVGLDMEEE E AFDEAVNRA
Sbjct: 21  LALHLARRGCRLVLIGNECVLQSMSKMIAESLKGVLPIEVVGLDMEEEREAAFDEAVNRA 80

Query: 232 SSILGTLDAFVHAYSYDG 250
            S+LGTLDAFVHAYSY+G
Sbjct: 81  CSVLGTLDAFVHAYSYEG 98

[Close]

BLAST of Lsi07G014850 vs. NCBI nr
Match: gi|659098401|ref|XP_008450121.1| (PREDICTED: carbonyl reductase [NADPH])

HSP 1 Score: 110.9 bits (276), Expect = 3.2e-21
Identity = 59/78 (75.64%), Postives = 64/78 (82.05%), Query Frame = 1


Query: 172 LALNFELCGFILVLLGNETVLRRSSKDIVESLKGVLPIEVVGLDMEEEGEVAFDEAVNRA 231
           LAL+    G  LVL+GNE VL+  SK I ESLKGVLPIEVVGLDMEEE E AFDEAVNRA
Sbjct: 21  LALHLARRGCRLVLIGNECVLQSMSKMIAESLKGVLPIEVVGLDMEEEREAAFDEAVNRA 80

Query: 232 SSILGTLDAFVHAYSYDG 250
            S+LGTLDAFVHAYSY+G
Sbjct: 81  CSVLGTLDAFVHAYSYEG 98

[Close]

BLAST of Lsi07G014850 vs. NCBI nr
Match: gi|778681622|ref|XP_011651549.1| (PREDICTED: carbonyl reductase [NADPH])

HSP 1 Score: 108.6 bits (270), Expect = 1.6e-20
Identity = 58/78 (74.36%), Postives = 63/78 (80.77%), Query Frame = 1


Query: 172 LALNFELCGFILVLLGNETVLRRSSKDIVESLKGVLPIEVVGLDMEEEGEVAFDEAVNRA 231
           LAL+    G  LVL+GNE VL+  SK I ESLKGVLPIEVVG+DMEEE E AFDEAVNRA
Sbjct: 21  LALHLARRGCRLVLIGNECVLQSMSKMIAESLKGVLPIEVVGVDMEEEREAAFDEAVNRA 80

Query: 232 SSILGTLDAFVHAYSYDG 250
             ILGTLDAFVHAYSY+G
Sbjct: 81  CGILGTLDAFVHAYSYEG 98

[Close]

BLAST of Lsi07G014850 vs. NCBI nr
Match: gi|225451491|ref|XP_002271350.1| (PREDICTED: short-chain dehydrogenase reductase 2a [Vitis vinifera])

HSP 1 Score: 89.4 bits (220), Expect = 1.0e-14
Identity = 44/80 (55.00%), Postives = 58/80 (72.50%), Query Frame = 1


Query: 170 AGLALNFELCGFILVLLGNETVLRRSSKDIVESLKGVLPIEVVGLDMEEEGEVAFDEAVN 229
           A +A +    G  LVL+GNE+ LR+ +++I+ S+KG  P+EVVG+DMEEE E  FDEAV 
Sbjct: 19  ANIAFHLAKRGCRLVLMGNESALRKIAEEIMGSIKGAAPVEVVGMDMEEEKESVFDEAVG 78

Query: 230 RASSILGTLDAFVHAYSYDG 250
           RA+  LG LDA VH YSY+G
Sbjct: 79  RATMWLGKLDALVHCYSYEG 98

[Close]

BLAST of Lsi07G014850 vs. NCBI nr
Match: gi|147822216|emb|CAN66009.1| (hypothetical protein VITISV_024278 [Vitis vinifera])

HSP 1 Score: 89.4 bits (220), Expect = 1.0e-14
Identity = 44/80 (55.00%), Postives = 58/80 (72.50%), Query Frame = 1


Query: 170 AGLALNFELCGFILVLLGNETVLRRSSKDIVESLKGVLPIEVVGLDMEEEGEVAFDEAVN 229
           A +A +    G  LVL+GNE+ LR+ +++I+ S+KG  P+EVVG+DMEEE E  FDEAV 
Sbjct: 19  ANIAFHLAKRGCRLVLMGNESALRKIAEEIMGSIKGAAPVEVVGMDMEEEKESVFDEAVG 78

Query: 230 RASSILGTLDAFVHAYSYDG 250
           RA+  LG LDA VH YSY+G
Sbjct: 79  RATMWLGKLDALVHCYSYEG 98

The following BLAST results are available for this feature:

BLAST of Lsi07G014850 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi07G014850 vs. TrEMBL


Match Name	E-value	Identity	Description
Q2PZA4_CUCME	2.3e-21	75.64	Putative alcohol dehydrogenases OS=Cucumis melo GN=ADH2 PE=2 SV=1	[more]
A0A0A0L8L9_CUCSA	1.1e-20	74.36	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G566330 PE=4 SV=1	[more]
A5BTT7_VITVI	7.0e-15	55.00	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_024278 PE=4 SV=1	[more]
D7SVM9_VITVI	7.0e-15	55.00	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0068g01760 PE=4 SV=...	[more]
U5FLC4_POPTR	6.6e-13	57.14	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0017s09760g PE=4 SV=1	[more]

BLAST of Lsi07G014850 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G01980.3	2.1e-10	41.03	NAD(P)-binding Rossmann-fold superfamily protein	[more]

BLAST of Lsi07G014850 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|661902990\|ref\|NP_001284466.1\|	3.2e-21	75.64	carbonyl reductase [NADPH]	[more]
gi\|659098401\|ref\|XP_008450121.1\|	3.2e-21	75.64	PREDICTED: carbonyl reductase [NADPH]	[more]
gi\|778681622\|ref\|XP_011651549.1\|	1.6e-20	74.36	PREDICTED: carbonyl reductase [NADPH]	[more]
gi\|225451491\|ref\|XP_002271350.1\|	1.0e-14	55.00	PREDICTED: short-chain dehydrogenase reductase 2a [Vitis vinifera]	[more]
gi\|147822216\|emb\|CAN66009.1\|	1.0e-14	55.00	hypothetical protein VITISV_024278 [Vitis vinifera]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi07G014850.1	Lsi07G014850.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi07G014850	Cucumber (Gy14) v1	cgylsiB042
Lsi07G014850	Cucurbita maxima (Rimu)	cmalsiB149
Lsi07G014850	Cucurbita maxima (Rimu)	cmalsiB255
Lsi07G014850	Cucurbita moschata (Rifu)	cmolsiB139
Lsi07G014850	Cucurbita moschata (Rifu)	cmolsiB243
Lsi07G014850	Cucurbita pepo (Zucchini)	cpelsiB514
Lsi07G014850	Cucurbita pepo (Zucchini)	cpelsiB573
Lsi07G014850	Wild cucumber (PI 183967)	cpilsiB234
Lsi07G014850	Cucumber (Chinese Long) v2	culsiB235
Lsi07G014850	Melon (DHL92) v3.5.1	lsimeB443
Lsi07G014850	Watermelon (Charleston Gray)	lsiwcgB400
Lsi07G014850	Watermelon (97103) v1	lsiwmB449
Lsi07G014850	Cucumber (Gy14) v2	cgyblsiB223
Lsi07G014850	Melon (DHL92) v3.6.1	lsimedB463
Lsi07G014850	Silver-seed gourd	carlsiB337
Lsi07G014850	Silver-seed gourd	carlsiB399
Lsi07G014850	Cucumber (Chinese Long) v3	cuclsiB256
Lsi07G014850	Watermelon (97103) v2	lsiwmbB401
Lsi07G014850	Wax gourd	lsiwgoB545