Lsi07G014190 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi07G014190
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionDNA-directed RNA polymerase III subunit RPC6
Locationchr07 : 20712783 .. 20716798 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAATTGCTCTGGAGGAGGTCTAATTGGGCAAGAAAAAGTGCTCTATGACCTGATTTGCAGCAAGCAAAGCATGGGAATTTGCACTTTCGACATGAAAAGAGAGACAAAGTTTGCTGAAAGTGTGGTAACAAAATCCCTCAAGTCCCTTCAAGCCAAAGGCCTGATAAAGGTGGTTCAACATTATCAAAACAAAGGCAAGAAGTTCTACATGTCAAACGACTTCGAACCTGCTAAGGAATTAACCGGTGGTAATTGGTATCGCGACGGGGAGCTTGACAAAGACTACATCAATACTCTCAAACAAGTTTGTGCAAGAATGATACAGAGGAAGAAGGTGATTACCATTGAAGGAATTGTGGAGTCTTTCAAACAGAGTGGAGCTTTCAAAGTAGAGTTGTCTAGAGAGCAAATTGAAGAGATTGTAAATGCTTTGTTGTTGGACAATCAAGTGATGGAGGTGAAGAGCTCTGGATTTGGAGAATTTGAATTTATTCCCGTTGGGAAGATTTGTTATAAGTACTGTACTCAAGGAGGAGGCCTCAAAGGAGAGCCCAAAACAGGGGCAATGACTTCCATTCCTTGTGGAGTCTGTCCACGGATCACTCATTGTACTCCAAACGGTATCATTTCTCCCACTACTTGTGTTTATTATACTAAGTGGTTAGATTTTTAAGTTGAACCATTTTTAAGATACATTTTTATATATACATATATATTTAAGTTGTCTTGAGTTGTAGATTGATGGCTGATAATGTTACCATGCTTGATATGAGCAAAGTATATAATAGAGTGTTTAGAGGGTAAAAAAGGAATACTTATGAGAATGGTTGCAATAATGTTTTTGGATATTTTGCACCATATATCAGCAATACAGATGACAATGTTTTCTCATAACTGAGAATTGTTTTGTTGACAGAGCTAATTTCAAGGAATAGCAAATTATAAGGACTAGTTGATCGAATTAAAAATTTATAGGTGTTAATTTTCAAAAAGAGAGAACTAAAAATGAAGAGAATGGTAGAATGGTAGAGATTTAAATGAAGATGAGTAGAGTGAGATGGACTCTTGTTTACTTGTTTCTTGGGCTTGCATTCATAATGAAAATAAATATATATATTTTTTATTTTAAAAGAAAAGTTTGTCACGCTTAAATTTTGATTAAGCACTAATGAGTTTAGAGATGTTTACAGGTGGGACGAGATCGAGATGGCTTCTCATTTCAGTCTCCATCTTCATAAAATTGTTCAGGAAATTAGTTTTAATTAAATAGTTAAATTTATCACTAATTGTTTTTATATAATTATTTCTACATGAATAATTTGAATTTAAAAGAAAAAAATTACTCAAATCAAATTTTCTACTAAAAGAAAATAATTACCTATGAAATTATTCATATATAAAATTTTATTTTAAATGTTTAATACAAACATAATTATCTTAATTATTAAATAATAAAACTTGAAATTTAAATATAATAATAATAATAACAACATTAATACAAATTAAAAAATAGGCCACATGGGGCAGATTCGGAGAATGCATGTGTCGTCTCTTAGGAGCCAGTAGACATCACTAAGTGGCTTAGCTCTAAATTATTGATTTTGAGTCTATATATAAGTCTTTATGGAGATATTTTTGTATTTTTCCAAATTCTTCCTCTATGAATTTTGTCGAGTTTGAACTCAAATTTGGTTGGATGTACTGTTTTTTAAGGAGATCTTTTGTATAATTTTTGGTGGGTTTTTCATATTTAGTGGGACTCATTATATATATGGAGTGGTAAAGAAGATCCAACTATGAAATTTTTAACTCTTTTATAACTCATTGATGCCATATAAAAGATGACTTTTTAATGATATATTTGGAGTGAGAATTCATTAGAGGCTTAATTTTGAAATACTTTTTAAATTTTAAGGTTAGATAACATTGAAAAATTTGTCTTGCTACAATTTCATAAAATTAAAAATCTCAAAAAATAAATTATAAATTACAAAGAGATTGAAAGAAAAGTTATTTTTGTGTGTATATATTAAAAGTTTGTTTTTTTTTTCTTTTATAATACTTATTTAAATTTAGAGTTCAATAGGATGAAATTAATTAAAAGTTACATTGAAGGTAAAATTGATACAACTTGATAAGTTTTTTTTTTTAATTTTTTTTTTTTTAACTTCTTTCAAAAAAACCAACATTTAATCTTTATATATATAAATATATATGCCAATACCATATTCAATTTTCCTATGGAAAAATAATTCGTATATGACATCAATATCATTAGTGTGAAATAAAGCCTTCATTTGTTCTAAATAAATAAATAAAGCTTCAAATCTTTAAAATCTTATCGAATTCAAATTCAAATTCTAAAAGAAAAGGAAATATTAAATTATTTTGATTAAAAAAAATTGCACAAAGTTTTATAAAAAAAAAATTATAACTTTCTAAATTAAATATATGAGATAATACTGTTTTCTTTTCTTTTTTTTTTTTAAAAAAAAAGGGAGATAATATTGTATCTTTTCAAAACAAAAAAAAATTGTTATTATATATTAGATGAATGAGATAAGGGGTTTGAAAATTTGGAGCCTCAGGCTTAGACGATGTCTCACTTAATTACCTTAATCCACCCTAATTTGATTGATTATGTCCAACCAATATAGAGCGAAATTGTAAAATTACTTCTATATTATTAAAATCTAATAGAAAAAGTGGTATTAAAAATCTCATTAGAGGCATTAACCTAAAATTAGCCAACTAAATTAATTTAAGTATGTCCTCAAAAACCCCACACATTTAGAAACTAAAAAAATCTCACCTTTTTTTTTTCCTTTAACAACGCTAACCTTGAGATGGATTATAAAGTCTATGCTAATAATTAAGCTATATTTTTTTAAAAAAAAAAAAAAATCCCAAATAATAAGAGAAAATAAAATATTTTTTTGGAAAATAAAAAGAGATAAAAGATTAAACCTTAATCTCTCTATAAAAAAAAATTGGTGGAATGGTTATGGTGATGCATTAATTAATTGGAAGAGATTAGGAAAAGTAATCCCTTCCATATTTTAATCCTTTAAAATAAATCCTTGTGATTCTCTTGGAGATTTTTTTAGTGATTTTCTCAAATTATTCGTTCATTTTCTATCTAGATTTTTTATTTTTTTTTTAAAAAAAAACAAATACTTGTAGATTTCCTTATATTCACTTATTTAGCCACTTAGTTAGTAGAGTAAGATACCGACCATTATTATTATTATTTTTTTTAATAGTTTCCACTAACCCTAAGCTCATCTCGTTTCCTCTCTTTGTTGAGCTTGATTTCTTAGATGAATAATAATGAAGGTTCATTGGGAAGGTGAAGAAGAAGAAGAAGAAGAAAAGACCAAATCTTCATGCAAAGTATGCAATAGAGAATTCAATTCCATCAAAGCATTGTATGGTCATATGAGGTCTCATCCCAATAGGACATGGAAGGGAATCCAACCACCAATCTCCATCTCTTCCTCTTCTTCTATATCGTCCTCGTCCTCGTCTTTGCCCAGCTGGTCCCTCACCGCCAAGAGGGGCCGTAAAGGCATTGGCTCTGTTTCTGTTGCTGTTGCCGCCTCCTCCTCTTCTTCAGTTTCTGAAGCTAAACCCAAATCTCATTTTACCCTAATCGATAGAGTGGATCAACGAAAAGAGAATAATGTGAGTAGTCCTCCAACGAAGAGAATGAAGAAAATGATGAATGATTGGGATAATTCCGTAATAGGTGAAAATGAAATCCATGAGCTCAAAGAAGTGAAGAAATTATATAAATGCAATAAGTGTGGAAAAGGGTTTTGGTCTCACCAAGCGTTGGGAGGCCATAAATCTAGCCACTACAAACCCAAATTTCAGTTATTAGTTTCAGATACTCAAGAGAGGAGGGTCCCTAATTTTGATCTCAATGAGCTCCCACCGAATGAAGACGACGACGACAACAACGACGACAACGGAGAAGCTAAAGCAAACATAGCTTATCAGGTTAGATAA

mRNA sequence

ATGAAGAATTGCTCTGGAGGAGGTCTAATTGGGCAAGAAAAAGTGCTCTATGACCTGATTTGCAGCAAGCAAAGCATGGGAATTTGCACTTTCGACATGAAAAGAGAGACAAAGTTTGCTGAAAGTGTGGTAACAAAATCCCTCAAGTCCCTTCAAGCCAAAGGCCTGATAAAGGTGGTTCAACATTATCAAAACAAAGGCAAGAAGTTCTACATGTCAAACGACTTCGAACCTGCTAAGGAATTAACCGGTGGTAATTGGTATCGCGACGGGGAGCTTGACAAAGACTACATCAATACTCTCAAACAAGTTTGTGCAAGAATGATACAGAGGAAGAAGGTGATTACCATTGAAGGAATTGTGGAGTCTTTCAAACAGAGTGGAGCTTTCAAAGTAGAGTTGTCTAGAGAGCAAATTGAAGAGATTGTAAATGCTTTGTTGTTGGACAATCAAGTGATGGAGGTGAAGAGCTCTGGATTTGGAGAATTTGAATTTATTCCCGTTGGGAAGATTTGTTATAAGTACTGTACTCAAGGAGGAGGCCTCAAAGGAGAGCCCAAAACAGGGGCAATGACTTCCATTCCTTGTGGAGTTCATTGGGAAGGTGAAGAAGAAGAAGAAGAAGAAAAGACCAAATCTTCATGCAAAGTATGCAATAGAGAATTCAATTCCATCAAAGCATTGTATGGTCATATGAGGTCTCATCCCAATAGGACATGGAAGGGAATCCAACCACCAATCTCCATCTCTTCCTCTTCTTCTATATCGTCCTCGTCCTCGTCTTTGCCCAGCTGGTCCCTCACCGCCAAGAGGGGCCGTAAAGGCATTGGCTCTGTTTCTGTTGCTGTTGCCGCCTCCTCCTCTTCTTCAGTTTCTGAAGCTAAACCCAAATCTCATTTTACCCTAATCGATAGAGTGGATCAACGAAAAGAGAATAATGTGAGTAGTCCTCCAACGAAGAGAATGAAGAAAATGATGAATGATTGGGATAATTCCGTAATAGGTGAAAATGAAATCCATGAGCTCAAAGAAGTGAAGAAATTATATAAATGCAATAAGTGTGGAAAAGGGTTTTGGTCTCACCAAGCGTTGGGAGGCCATAAATCTAGCCACTACAAACCCAAATTTCAGTTATTAGTTTCAGATACTCAAGAGAGGAGGGTCCCTAATTTTGATCTCAATGAGCTCCCACCGAATGAAGACGACGACGACAACAACGACGACAACGGAGAAGCTAAAGCAAACATAGCTTATCAGGTTAGATAA

Coding sequence (CDS)

ATGAAGAATTGCTCTGGAGGAGGTCTAATTGGGCAAGAAAAAGTGCTCTATGACCTGATTTGCAGCAAGCAAAGCATGGGAATTTGCACTTTCGACATGAAAAGAGAGACAAAGTTTGCTGAAAGTGTGGTAACAAAATCCCTCAAGTCCCTTCAAGCCAAAGGCCTGATAAAGGTGGTTCAACATTATCAAAACAAAGGCAAGAAGTTCTACATGTCAAACGACTTCGAACCTGCTAAGGAATTAACCGGTGGTAATTGGTATCGCGACGGGGAGCTTGACAAAGACTACATCAATACTCTCAAACAAGTTTGTGCAAGAATGATACAGAGGAAGAAGGTGATTACCATTGAAGGAATTGTGGAGTCTTTCAAACAGAGTGGAGCTTTCAAAGTAGAGTTGTCTAGAGAGCAAATTGAAGAGATTGTAAATGCTTTGTTGTTGGACAATCAAGTGATGGAGGTGAAGAGCTCTGGATTTGGAGAATTTGAATTTATTCCCGTTGGGAAGATTTGTTATAAGTACTGTACTCAAGGAGGAGGCCTCAAAGGAGAGCCCAAAACAGGGGCAATGACTTCCATTCCTTGTGGAGTTCATTGGGAAGGTGAAGAAGAAGAAGAAGAAGAAAAGACCAAATCTTCATGCAAAGTATGCAATAGAGAATTCAATTCCATCAAAGCATTGTATGGTCATATGAGGTCTCATCCCAATAGGACATGGAAGGGAATCCAACCACCAATCTCCATCTCTTCCTCTTCTTCTATATCGTCCTCGTCCTCGTCTTTGCCCAGCTGGTCCCTCACCGCCAAGAGGGGCCGTAAAGGCATTGGCTCTGTTTCTGTTGCTGTTGCCGCCTCCTCCTCTTCTTCAGTTTCTGAAGCTAAACCCAAATCTCATTTTACCCTAATCGATAGAGTGGATCAACGAAAAGAGAATAATGTGAGTAGTCCTCCAACGAAGAGAATGAAGAAAATGATGAATGATTGGGATAATTCCGTAATAGGTGAAAATGAAATCCATGAGCTCAAAGAAGTGAAGAAATTATATAAATGCAATAAGTGTGGAAAAGGGTTTTGGTCTCACCAAGCGTTGGGAGGCCATAAATCTAGCCACTACAAACCCAAATTTCAGTTATTAGTTTCAGATACTCAAGAGAGGAGGGTCCCTAATTTTGATCTCAATGAGCTCCCACCGAATGAAGACGACGACGACAACAACGACGACAACGGAGAAGCTAAAGCAAACATAGCTTATCAGGTTAGATAA

Protein sequence

MKNCSGGGLIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKVVQHYQNKGKKFYMSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQRKKVITIEGIVESFKQSGAFKVELSREQIEEIVNALLLDNQVMEVKSSGFGEFEFIPVGKICYKYCTQGGGLKGEPKTGAMTSIPCGVHWEGEEEEEEEKTKSSCKVCNREFNSIKALYGHMRSHPNRTWKGIQPPISISSSSSISSSSSSLPSWSLTAKRGRKGIGSVSVAVAASSSSSVSEAKPKSHFTLIDRVDQRKENNVSSPPTKRMKKMMNDWDNSVIGENEIHELKEVKKLYKCNKCGKGFWSHQALGGHKSSHYKPKFQLLVSDTQERRVPNFDLNELPPNEDDDDNNDDNGEAKANIAYQVR
Homology
[Close]
BLAST of Lsi07G014190 vs. Swiss-Prot
Match: RPC6_MOUSE (DNA-directed RNA polymerase III subunit RPC6 OS=Mus musculus GN=Polr3f PE=1 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 7.5e-15
Identity = 52/162 (32.10%), Postives = 84/162 (51.85%), Query Frame = 1 

Query: 8   GLIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKVVQHYQNKG 67
           G   QEK++Y +I    + GI + D++ ++    + + K LK+L++K LIK V+      
Sbjct: 87  GSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLESKKLIKAVKSVAASK 146

Query: 68  KKFYMSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQRKKVITIEG----IVE- 127
           KK YM  + +P + +TGG WY D + + +++  L Q C + +Q K     E     +++ 
Sbjct: 147 KKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPVIQR 206

Query: 128 --SFKQS----------GAFKVELSREQIEEIVNALLLDNQV 153
             SF  S          G  KVELS E IE I+N L+ D +V
Sbjct: 207 NSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKV 248

[Close]
BLAST of Lsi07G014190 vs. Swiss-Prot
Match: RPC6_BOVIN (DNA-directed RNA polymerase III subunit RPC6 OS=Bos taurus GN=POLR3F PE=2 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 9.8e-15
Identity = 52/162 (32.10%), Postives = 81/162 (50.00%), Query Frame = 1 

Query: 8   GLIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKVVQHYQNKG 67
           G   QEK++Y +I    + GI + D++ ++    + + K LK+L++K LIK V+      
Sbjct: 87  GSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLESKKLIKAVKSVAASK 146

Query: 68  KKFYMSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQRKKVITIEGIV------ 127
           KK YM  + +P + +TGG WY D + + +++  L Q C + +Q K     E         
Sbjct: 147 KKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQNKAETARESKQNPMIQR 206

Query: 128 -ESFKQS----------GAFKVELSREQIEEIVNALLLDNQV 153
             SF  S          G  KVELS E IE I+N L+ D +V
Sbjct: 207 NSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKV 248

[Close]
BLAST of Lsi07G014190 vs. Swiss-Prot
Match: RPC6_HUMAN (DNA-directed RNA polymerase III subunit RPC6 OS=Homo sapiens GN=POLR3F PE=1 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.3e-14
Identity = 52/162 (32.10%), Postives = 81/162 (50.00%), Query Frame = 1 

Query: 8   GLIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKVVQHYQNKG 67
           G   QEK++Y +I    + GI + D++ ++    + + K LK+L++K LIK V+      
Sbjct: 87  GSDNQEKLVYQIIEDAGNKGIWSRDIRYKSNLPLTEINKILKNLESKKLIKAVKSVAASK 146

Query: 68  KKFYMSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQRKKVITIEGIV------ 127
           KK YM  + +P + +TGG WY D + + +++  L Q C + +Q K     E         
Sbjct: 147 KKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPMIQR 206

Query: 128 -ESFKQS----------GAFKVELSREQIEEIVNALLLDNQV 153
             SF  S          G  KVELS E IE I+N L+ D +V
Sbjct: 207 NSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKV 248

[Close]
BLAST of Lsi07G014190 vs. Swiss-Prot
Match: RPC6_DICDI (DNA-directed RNA polymerase III subunit rpc6 OS=Dictyostelium discoideum GN=polr3f PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 2.2e-14
Identity = 45/156 (28.85%), Postives = 82/156 (52.56%), Query Frame = 1 

Query: 8   GLIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKVVQHYQNKG 67
           GL  ++ ++Y LI +  + G  T ++K  + + +  +TK LK+L+++ LIK V+  Q+  
Sbjct: 74  GLGVEDFLIYQLIEASSNTGAWTRELKNSSGYQQVQITKILKTLESRKLIKSVKSIQSGR 133

Query: 68  KKFYMSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQRKKVITIEGIVESFKQ- 127
           KK YM  + EP++E+TGG  Y D   D  YI  +K      +  K  + +  I+   ++ 
Sbjct: 134 KKVYMLYNMEPSREITGGQLYSDQSYDHQYIQIMKMHIKTFVDNKGAVDLADIITYLRKV 193

Query: 128 -SGAFKVELSREQIEEIVNALLLDNQVMEVKSSGFG 162
              A    L  E I+ +VN ++ D  + E++ +  G
Sbjct: 194 AEEATSQSLGPEDIQALVNTVIYDGDIEEMRDTRMG 229

[Close]
BLAST of Lsi07G014190 vs. Swiss-Prot
Match: RPC6_SCHPO (Probable DNA-directed RNA polymerase III subunit rpc6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpc6 PE=2 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 2.4e-13
Identity = 52/169 (30.77%), Postives = 81/169 (47.93%), Query Frame = 1 

Query: 11  GQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKVVQHYQNKGKKF 70
           G E+++Y  I +  + GI    +   T    SVV + LKSL++K L+K ++  +N  +K 
Sbjct: 85  GDEQIVYSFIKNSGNEGIWRKTLTLRTNLHVSVVDRCLKSLESKNLVKSIKSVKNPTRKI 144

Query: 71  YMSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQRKK----------------- 130
           YM  D  P+ ELTGG W+ D ELD ++I  LK+V  R +  K                  
Sbjct: 145 YMLYDLVPSTELTGGPWFTDQELDVEFIENLKKVIYRYVHSKSFPPKKAAMGPDLVWGPE 204

Query: 131 ---VITIEGIVESFKQSGAFKVELSREQIEEIVNALLLDNQVMEVKSSG 160
                T   I    + +   KV+LS   +  +V+ L+ D +V E +S G
Sbjct: 205 YNGYPTALQIHNWLRSTNITKVDLSLANVISLVDVLIYDGKV-EKRSDG 252

[Close]
BLAST of Lsi07G014190 vs. TrEMBL
Match: A0A0A0L5W6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G043930 PE=4 SV=1)

HSP 1 Score: 385.2 bits (988), Expect = 1.0e-103
Identity = 187/197 (94.92%), Postives = 193/197 (97.97%), Query Frame = 1 

Query: 2   KNCSGGGLIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKVVQ 61
           KN SGG LIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQ KGLIK+VQ
Sbjct: 20  KNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQTKGLIKIVQ 79

Query: 62  HYQNKGKKFYMSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQRKKVITIEGIV 121
           HYQNKGKKFY+SNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQRKK++TIEGIV
Sbjct: 80  HYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQRKKLMTIEGIV 139

Query: 122 ESFKQSGAFKVELSREQIEEIVNALLLDNQVMEVKSSGFGEFEFIPVGKICYKYCTQGGG 181
           ESFKQSGAFKVELSREQIEEIVNAL+LDNQVMEVKSSGFGEFEFIP+GKICYKYCTQGGG
Sbjct: 140 ESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGEFEFIPIGKICYKYCTQGGG 199

Query: 182 LKGEPKTGAMTSIPCGV 199
           LKGEPKTGAM SIPCGV
Sbjct: 200 LKGEPKTGAMASIPCGV 216

[Close]
BLAST of Lsi07G014190 vs. TrEMBL
Match: B9RBH3_RICCO (DNA-directed RNA polymerase III subunit F, putative OS=Ricinus communis GN=RCOM_1676960 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 5.2e-55
Identity = 110/190 (57.89%), Postives = 140/190 (73.68%), Query Frame = 1 

Query: 9   LIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKVVQHYQNKGK 68
           L   E  LY++I SKQ MGI T DMKRET   ++VV KSLK LQAK LIK V + QNKG+
Sbjct: 21  LTEHECTLYNVIWSKQDMGIWTRDMKRETNLPDNVVNKSLKVLQAKNLIKEVVNIQNKGR 80

Query: 69  KFYMSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQRKKVITIEGIVESFKQSG 128
           K YM+ +FEP+KE+TGG WY +G LD ++I  LK+VC + + + KV T+EGI +S K+SG
Sbjct: 81  KHYMATEFEPSKEITGGAWYVEGNLDTEFIKLLKEVCTKQVLKLKVATLEGITDSIKRSG 140

Query: 129 AFKVELSREQIEEIVNALLLDNQVMEVKSSGFGEFEFIPVGKICYKYCTQGGGLKGEPKT 188
            F  EL+++QIEEIV AL+LDN ++EVKS+G  EF FIP+GK+CYK C   G   GEP+ 
Sbjct: 141 IFNTELTKQQIEEIVKALVLDNALIEVKSNGMLEFSFIPIGKVCYK-CVGKGSTAGEPRI 200

Query: 189 GAMTSIPCGV 199
           GAM SIPCGV
Sbjct: 201 GAMASIPCGV 209

[Close]
BLAST of Lsi07G014190 vs. TrEMBL
Match: V4RZH5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026399mg PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 2.0e-54
Identity = 111/198 (56.06%), Postives = 148/198 (74.75%), Query Frame = 1 

Query: 3   NCSGGGLIGQEKVLYDLICSKQSMGICTFDMKRETK--FAESVVTKSLKSLQAKGLIKVV 62
           N     L   E+++YD+I SKQ MGI T DMKRE +    +++VTKS+KSLQ K LIK V
Sbjct: 10  NAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEV 69

Query: 63  QHYQNKGKKFYMSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQRKKVITIEGI 122
            +  +KGKK  M+ +FEP+KE++GG WY +G LD ++I  +K  C + I + KV T+EGI
Sbjct: 70  VNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGI 129

Query: 123 VESFKQSGAFKVELSREQIEEIVNALLLDNQVMEVKSSGFGEFEFIPVGKICYKYCTQGG 182
            +S K+SGAFKV+L+++QIEEIV AL+LDNQ+MEVKS+G GEF  IPVGK+CYK  ++GG
Sbjct: 130 SDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGG 189

Query: 183 GLKGEPKTGAMTSIPCGV 199
           G  GEPKTG++ SIPCGV
Sbjct: 190 G-GGEPKTGSLASIPCGV 206

[Close]
BLAST of Lsi07G014190 vs. TrEMBL
Match: A0A067DQG7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g026766mg PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 2.0e-54
Identity = 111/198 (56.06%), Postives = 148/198 (74.75%), Query Frame = 1 

Query: 3   NCSGGGLIGQEKVLYDLICSKQSMGICTFDMKRETK--FAESVVTKSLKSLQAKGLIKVV 62
           N     L   E+++YD+I SKQ MGI T DMKRE +    +++VTKS+KSLQ K LIK V
Sbjct: 10  NAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEV 69

Query: 63  QHYQNKGKKFYMSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQRKKVITIEGI 122
            +  +KGKK  M+ +FEP+KE++GG WY +G LD ++I  +K  C + I + KV T+EGI
Sbjct: 70  VNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGI 129

Query: 123 VESFKQSGAFKVELSREQIEEIVNALLLDNQVMEVKSSGFGEFEFIPVGKICYKYCTQGG 182
            +S K+SGAFKV+L+++QIEEIV AL+LDNQ+MEVKS+G GEF  IPVGK+CYK  ++GG
Sbjct: 130 SDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGG 189

Query: 183 GLKGEPKTGAMTSIPCGV 199
           G  GEPKTG++ SIPCGV
Sbjct: 190 G-GGEPKTGSLASIPCGV 206

[Close]
BLAST of Lsi07G014190 vs. TrEMBL
Match: A0A0B2Q204_GLYSO (DNA-directed RNA polymerase III subunit RPC6 OS=Glycine soja GN=glysoja_016081 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 4.4e-54
Identity = 107/192 (55.73%), Postives = 144/192 (75.00%), Query Frame = 1 

Query: 7   GGLIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKVVQHYQNK 66
           G L   E+VLY+LI SK+ MGI T DMKRET   +S+V KSLK LQ+K LIK V + QNK
Sbjct: 22  GSLTDGERVLYNLIHSKKDMGIWTGDMKRETNLPDSIVKKSLKLLQSKNLIKEVVNIQNK 81

Query: 67  GKKFYMSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQRKKVITIEGIVESFKQ 126
           G+K YM+ +FEP+KE+TGG WY  G LD D+IN +K VC + I R+KV T +G++E  ++
Sbjct: 82  GRKHYMAAEFEPSKEITGGVWYNQGRLDTDFINLVKDVCLKYIFRQKVATRDGVMEWSRK 141

Query: 127 SGAFKVELSREQIEEIVNALLLDNQVMEVKSSGFGEFEFIPVGKICYKYCTQGGGLKGEP 186
           SG F VE++ +QI+EI+  L+LD++++EVKS+GFG+F  +PVG+ICY+ C   GG +GE 
Sbjct: 142 SGVFNVEVTTQQIDEILRTLVLDDEIVEVKSTGFGDFSSVPVGRICYR-CKSKGGNRGEQ 201

Query: 187 KTGAMTSIPCGV 199
           K GAM SIPCGV
Sbjct: 202 KPGAMASIPCGV 212

[Close]
BLAST of Lsi07G014190 vs. TAIR10
Match: AT5G23710.1 (AT5G23710.1 DNA binding;DNA-directed RNA polymerases)

HSP 1 Score: 150.2 bits (378), Expect = 2.8e-36
Identity = 84/198 (42.42%), Postives = 120/198 (60.61%), Query Frame = 1 

Query: 5   SGGGLIGQ--EKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKVVQH 64
           S GG + +  EK L DLI   Q  G   F++KRE     ++VT+ + SL+ K LIK V +
Sbjct: 11  SSGGDLNEPHEKKLLDLIRINQGRGATMFELKREKTIPATIVTRLIASLRKKNLIKEVAN 70

Query: 65  YQNKGKKFYMSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQ--RKKVITIEGI 124
             NKG K Y++ +FEP  ELTGG WY DG LD   I  LK  C  +++  R++V+T+E +
Sbjct: 71  MNNKGVKHYLAMEFEPCSELTGGEWYTDGALDLSKIEDLKAKCVMILERHRQRVVTLEVL 130

Query: 125 VESFKQSGAFKVELSREQIEEIVNALLLDNQVMEVKSSGFGEFEFIPVGKICYKYCTQGG 184
              F +    + +LS +Q +EI+  L+LDN +MEVKS+G  EF    +G++CY+   +  
Sbjct: 131 CGYFVK----EEKLSVDQTKEILKNLILDNLIMEVKSNGMNEFASTRIGEVCYRLTGKKF 190

Query: 185 GLKGEPKTGAMTSIPCGV 199
           G  GEP+ GA  SIPCGV
Sbjct: 191 G-NGEPRAGAFASIPCGV 203

[Close]
BLAST of Lsi07G014190 vs. TAIR10
Match: AT4G35280.1 (AT4G35280.1 C2H2-like zinc finger protein)

HSP 1 Score: 56.2 bits (134), Expect = 5.6e-08
Identity = 57/210 (27.14%), Postives = 91/210 (43.33%), Query Frame = 1 

Query: 210 KTKSSCKVCNREFNSIKALYGHMRSHPNRTWKGIQPP--ISISSSSSISSSSSSLPSWSL 269
           K    C  C R+F S KAL+GHMR HP R W+GI PP    + +++S    +  LP+W  
Sbjct: 74  KITRPCTECGRKFWSWKALFGHMRCHPERQWRGINPPPNYRVPTAASSKQLNQILPNWVS 133

Query: 270 TAKRGRKGIGS--VSVAVAASSSSSVSEAKPKSHFTLIDRVDQRKENNVSSPPTKRMKKM 329
                   + S  + ++    SSSS+   +      +         +  S    K    +
Sbjct: 134 FMSEEDHEVASCLLMLSNGTPSSSSIERFECGGCKKVFGSHQALGGHRASHKNVKGCFAI 193

Query: 330 MNDWDNSVI-----GENEIHELKEVKKLYKCNKCGKGFWSHQALGGHKSSHYKPKFQLLV 389
            N  D+ +      G +   ++      +KCN C + F S QALGGH   H++ + + ++
Sbjct: 194 TNVTDDPMTVSTSSGHDHQGKILTFSGHHKCNICFRVFSSGQALGGHMRCHWEKEEEPMI 253

Query: 390 SDTQERRVPNFDLNELPPNEDDDDNNDDNG 411
           S          DLN +PP   D   +D +G
Sbjct: 254 SGA-------LDLN-VPPTIQDLSTSDTSG 275

[Close]
BLAST of Lsi07G014190 vs. TAIR10
Match: AT2G17180.1 (AT2G17180.1 C2H2-like zinc finger protein)

HSP 1 Score: 54.3 bits (129), Expect = 2.1e-07
Identity = 27/53 (50.94%), Postives = 36/53 (67.92%), Query Frame = 1 

Query: 215 CKVCNREFNSIKALYGHMRSHPNRTWKGIQPPISIS---SSSSISSSSSSLPS 265
           C  C ++F S+KAL+GHMR HP R W+GI PP +     +S++ SSSSS  PS
Sbjct: 67  CTECGKQFGSLKALFGHMRCHPERQWRGINPPSNFKRRINSNAASSSSSWDPS 119

[Close]
BLAST of Lsi07G014190 vs. TAIR10
Match: AT5G56200.1 (AT5G56200.1 C2H2 type zinc finger transcription factor family)

HSP 1 Score: 53.9 bits (128), Expect = 2.8e-07
Identity = 26/49 (53.06%), Postives = 35/49 (71.43%), Query Frame = 1 

Query: 214 SCKVCNREFNSIKALYGHMRSHPNRTWKGIQPPISISSSSSISSSSSSL 263
           +C VC ++F S+KALYGHMR HP+R WKG+ PP  +      +SSSS+L
Sbjct: 131 ACCVCYKKFTSMKALYGHMRFHPDRGWKGVLPPPPLLPHPLGNSSSSTL 179

[Close]
BLAST of Lsi07G014190 vs. TAIR10
Match: AT2G26940.1 (AT2G26940.1 C2H2-type zinc finger family protein)

HSP 1 Score: 52.8 bits (125), Expect = 6.1e-07
Identity = 24/50 (48.00%), Postives = 35/50 (70.00%), Query Frame = 1 

Query: 201 EGEEEEEEEKT----KSSCKVCNREFNSIKALYGHMRSHPNRTWKGIQPP 247
           E E+E +  +T    K  C +C +EF ++ +L+GHMR HP+RTWKGI+PP
Sbjct: 103 EKEKEIDLARTDVEGKIRCCLCGKEFQTMHSLFGHMRRHPDRTWKGIRPP 152

[Close]
BLAST of Lsi07G014190 vs. NCBI nr
Match: gi|449461094|ref|XP_004148278.1| (PREDICTED: DNA-directed RNA polymerase III subunit RPC6 [Cucumis sativus])

HSP 1 Score: 385.2 bits (988), Expect = 1.5e-103
Identity = 187/197 (94.92%), Postives = 193/197 (97.97%), Query Frame = 1 

Query: 2   KNCSGGGLIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKVVQ 61
           KN SGG LIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQ KGLIK+VQ
Sbjct: 20  KNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQTKGLIKIVQ 79

Query: 62  HYQNKGKKFYMSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQRKKVITIEGIV 121
           HYQNKGKKFY+SNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQRKK++TIEGIV
Sbjct: 80  HYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQRKKLMTIEGIV 139

Query: 122 ESFKQSGAFKVELSREQIEEIVNALLLDNQVMEVKSSGFGEFEFIPVGKICYKYCTQGGG 181
           ESFKQSGAFKVELSREQIEEIVNAL+LDNQVMEVKSSGFGEFEFIP+GKICYKYCTQGGG
Sbjct: 140 ESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGEFEFIPIGKICYKYCTQGGG 199

Query: 182 LKGEPKTGAMTSIPCGV 199
           LKGEPKTGAM SIPCGV
Sbjct: 200 LKGEPKTGAMASIPCGV 216

[Close]
BLAST of Lsi07G014190 vs. NCBI nr
Match: gi|659096228|ref|XP_008448982.1| (PREDICTED: DNA-directed RNA polymerase III subunit rpc6-like [Cucumis melo])

HSP 1 Score: 382.9 bits (982), Expect = 7.3e-103
Identity = 186/197 (94.42%), Postives = 192/197 (97.46%), Query Frame = 1 

Query: 2   KNCSGGGLIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKVVQ 61
           KN SGG LIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQ KGLIK+VQ
Sbjct: 20  KNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQTKGLIKIVQ 79

Query: 62  HYQNKGKKFYMSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQRKKVITIEGIV 121
           HYQNKGKKFY+SNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQRKK++TIEGIV
Sbjct: 80  HYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQRKKLMTIEGIV 139

Query: 122 ESFKQSGAFKVELSREQIEEIVNALLLDNQVMEVKSSGFGEFEFIPVGKICYKYCTQGGG 181
           ESFKQSGAFKVELSREQIEEIVNAL+LDNQVMEVKSSGFGEFEFIP+GKICYKYCTQGGG
Sbjct: 140 ESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGEFEFIPIGKICYKYCTQGGG 199

Query: 182 LKGEPKTGAMTSIPCGV 199
           LKGEPK GAM SIPCGV
Sbjct: 200 LKGEPKIGAMASIPCGV 216

[Close]
BLAST of Lsi07G014190 vs. NCBI nr
Match: gi|659078854|ref|XP_008439941.1| (PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Cucumis melo])

HSP 1 Score: 370.2 bits (949), Expect = 4.9e-99
Identity = 182/197 (92.39%), Postives = 190/197 (96.45%), Query Frame = 1 

Query: 2   KNCSGGGLIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKVVQ 61
           KN S G LIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQ KGLIK+VQ
Sbjct: 20  KNSSVGALIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQTKGLIKIVQ 79

Query: 62  HYQNKGKKFYMSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQRKKVITIEGIV 121
           HYQNKGKKFY+SNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQRKK++TIEGIV
Sbjct: 80  HYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQRKKLMTIEGIV 139

Query: 122 ESFKQSGAFKVELSREQIEEIVNALLLDNQVMEVKSSGFGEFEFIPVGKICYKYCTQGGG 181
           ESFKQSGAFKVEL+REQIEEIVNAL+LDNQV EVKSSGFGEFEFIP+GKICYKYC+Q GG
Sbjct: 140 ESFKQSGAFKVELTREQIEEIVNALVLDNQVTEVKSSGFGEFEFIPIGKICYKYCSQ-GG 199

Query: 182 LKGEPKTGAMTSIPCGV 199
           LKGEPKTGAM SIPCGV
Sbjct: 200 LKGEPKTGAMASIPCGV 215

[Close]
BLAST of Lsi07G014190 vs. NCBI nr
Match: gi|1009182704|ref|XP_015872858.1| (PREDICTED: DNA-directed RNA polymerase III subunit RPC6 [Ziziphus jujuba])

HSP 1 Score: 231.1 bits (588), Expect = 3.6e-57
Identity = 115/196 (58.67%), Postives = 151/196 (77.04%), Query Frame = 1 

Query: 3   NCSGGGLIGQEKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKVVQH 62
           N     L  QE++LYD+I SKQ MGI T DMKRET   ++VV KSLKSLQAK LIK V +
Sbjct: 18  NSPSESLTEQERILYDVIRSKQDMGIWTRDMKRETNLPDNVVNKSLKSLQAKKLIKEVVN 77

Query: 63  YQNKGKKFYMSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQRKKVITIEGIVE 122
            QNKG+K YM+ +FEP+KE++GG WY +G LD ++I+ LK  CA++I +++V T+EGI++
Sbjct: 78  IQNKGRKHYMAAEFEPSKEISGGAWYVEGSLDTEFIDLLKDQCAKIIYKQRVATVEGILD 137

Query: 123 SFKQSGAFKVELSREQIEEIVNALLLDNQVMEVKSSGFGEFEFIPVGKICYKYCTQGGGL 182
             +++G FKVE S +QIEEI+ AL+LDN VM+VKS+G GEF+ IPVGK+CYK CT   G+
Sbjct: 138 VIRRTGIFKVEFSTQQIEEILRALVLDNVVMDVKSNGMGEFDSIPVGKVCYK-CT-NKGV 197

Query: 183 KGEPKTGAMTSIPCGV 199
           +GEPK GAM SIPCGV
Sbjct: 198 RGEPKAGAMASIPCGV 211

[Close]
BLAST of Lsi07G014190 vs. NCBI nr
Match: gi|1012210057|ref|XP_015932888.1| (PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Arachis duranensis])

HSP 1 Score: 227.6 bits (579), Expect = 3.9e-56
Identity = 106/186 (56.99%), Postives = 147/186 (79.03%), Query Frame = 1 

Query: 13  EKVLYDLICSKQSMGICTFDMKRETKFAESVVTKSLKSLQAKGLIKVVQHYQNKGKKFYM 72
           E+VLY+LI SK+ MGI + DMKRET   ++VV KSLK LQ+KGLIK V + QNK +K YM
Sbjct: 28  ERVLYNLILSKRDMGIWSGDMKRETNLPDNVVKKSLKLLQSKGLIKEVVNIQNKARKHYM 87

Query: 73  SNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQRKKVITIEGIVESFKQSGAFKV 132
           +  FEP+KE+TGG+WY +G LDK+ IN +K VC + I R+KV+T +G++E  ++SG F  
Sbjct: 88  AAQFEPSKEITGGDWYSEGNLDKELINAVKSVCLKYISRQKVVTCDGVLEWSRKSGVFTA 147

Query: 133 ELSREQIEEIVNALLLDNQVMEVKSSGFGEFEFIPVGKICYKYCTQGGGLKGEPKTGAMT 192
           E+S +QIEEI+  L+LD++++EVKS+G+G+FE +PVG++CYK C   GG++GEPK GAM+
Sbjct: 148 EVSNQQIEEILRTLVLDDEIIEVKSTGYGDFENVPVGRVCYK-CKSKGGVRGEPKDGAMS 207

Query: 193 SIPCGV 199
           SIPCGV
Sbjct: 208 SIPCGV 212

The following BLAST results are available for this feature:
BLAST of Lsi07G014190 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RPC6_MOUSE7.5e-1532.10DNA-directed RNA polymerase III subunit RPC6 OS=Mus musculus GN=Polr3f PE=1 SV=1[more]
RPC6_BOVIN9.8e-1532.10DNA-directed RNA polymerase III subunit RPC6 OS=Bos taurus GN=POLR3F PE=2 SV=1[more]
RPC6_HUMAN1.3e-1432.10DNA-directed RNA polymerase III subunit RPC6 OS=Homo sapiens GN=POLR3F PE=1 SV=1[more]
RPC6_DICDI2.2e-1428.85DNA-directed RNA polymerase III subunit rpc6 OS=Dictyostelium discoideum GN=polr... [more]
RPC6_SCHPO2.4e-1330.77Probable DNA-directed RNA polymerase III subunit rpc6 OS=Schizosaccharomyces pom... [more]
BLAST of Lsi07G014190 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L5W6_CUCSA1.0e-10394.92Uncharacterized protein OS=Cucumis sativus GN=Csa_3G043930 PE=4 SV=1[more]
B9RBH3_RICCO5.2e-5557.89DNA-directed RNA polymerase III subunit F, putative OS=Ricinus communis GN=RCOM_... [more]
V4RZH5_9ROSI2.0e-5456.06Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026399mg PE=4 SV=1[more]
A0A067DQG7_CITSI2.0e-5456.06Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g026766mg PE=4 SV=1[more]
A0A0B2Q204_GLYSO4.4e-5455.73DNA-directed RNA polymerase III subunit RPC6 OS=Glycine soja GN=glysoja_016081 P... [more]
BLAST of Lsi07G014190 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G23710.12.8e-3642.42 DNA binding;DNA-directed RNA polymerases[more]
AT4G35280.15.6e-0827.14 C2H2-like zinc finger protein[more]
AT2G17180.12.1e-0750.94 C2H2-like zinc finger protein[more]
AT5G56200.12.8e-0753.06 C2H2 type zinc finger transcription factor family[more]
AT2G26940.16.1e-0748.00 C2H2-type zinc finger family protein[more]
BLAST of Lsi07G014190 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449461094|ref|XP_004148278.1|1.5e-10394.92PREDICTED: DNA-directed RNA polymerase III subunit RPC6 [Cucumis sativus][more]
gi|659096228|ref|XP_008448982.1|7.3e-10394.42PREDICTED: DNA-directed RNA polymerase III subunit rpc6-like [Cucumis melo][more]
gi|659078854|ref|XP_008439941.1|4.9e-9992.39PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Cucumis melo][more]
gi|1009182704|ref|XP_015872858.1|3.6e-5758.67PREDICTED: DNA-directed RNA polymerase III subunit RPC6 [Ziziphus jujuba][more]
gi|1012210057|ref|XP_015932888.1|3.9e-5656.99PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Arachis duranensis... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003899DNA-directed RNA polymerase activity
GO:0046872metal ion binding
Vocabulary: Biological Process
TermDefinition
GO:0006359regulation of transcription from RNA polymerase III promoter
Vocabulary: Cellular Component
TermDefinition
GO:0005666DNA-directed RNA polymerase III complex
Vocabulary: INTERPRO
TermDefinition
IPR016049RNA_pol_Rpc34-like
IPR015880Zinc finger, C2H2-like
IPR013087Znf_C2H2_type
IPR011991Winged helix-turn-helix DNA-binding domain
IPR007832RNA_pol_Rpc34
IPR007087Zinc finger, C2H2
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006359 regulation of transcription from RNA polymerase III promoter
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
cellular_component GO:0005666 DNA-directed RNA polymerase III complex
cellular_component GO:0005730 nucleolus
molecular_function GO:0003677 DNA binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0001056 RNA polymerase III activity
molecular_function GO:0003899 DNA-directed RNA polymerase activity
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi07G014190.1Lsi07G014190.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007087Zinc finger, C2H2PFAMPF13912zf-C2H2_6coord: 215..235
score: 6.0E-8coord: 349..373
score: 2.
IPR007087Zinc finger, C2H2PROSITEPS00028ZINC_FINGER_C2H2_1coord: 351..371
score: -coord: 215..235
scor
IPR007087Zinc finger, C2H2PROFILEPS50157ZINC_FINGER_C2H2_2coord: 349..376
score: 11.074coord: 213..240
score: 9
IPR007832RNA polymerase Rpc34PFAMPF05158RNA_pol_Rpc34coord: 11..117
score: 3.2
IPR011991Winged helix-turn-helix DNA-binding domainGENE3DG3DSA:1.10.10.10coord: 12..71
score: 4.
IPR011991Winged helix-turn-helix DNA-binding domainunknownSSF46785"Winged helix" DNA-binding domaincoord: 11..75
score: 2.43
IPR013087Zinc finger C2H2-type/integrase DNA-binding domainGENE3DG3DSA:3.30.160.60coord: 347..371
score: 9.
IPR015880Zinc finger, C2H2-likeSMARTSM00355c2h2final6coord: 213..235
score: 0.039coord: 349..371
score: 0
IPR016049RNA polymerase Rpc34-likePANTHERPTHR12780RNA POLYMERASE III DNA DIRECTED , 39KD SUBUNIT-RELATEDcoord: 8..198
score: 1.1
NoneNo IPR availablePANTHERPTHR12780:SF1DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC6coord: 8..198
score: 1.1
NoneNo IPR availableunknownSSF57667beta-beta-alpha zinc fingerscoord: 214..235
score: 1.04E-8coord: 344..371
score: 1.0